Dbfetch
ID EU881919; SV 1; linear; genomic RNA; STD; VRL; 2235 BP. XX AC EU881919; XX DT 13-AUG-2008 (Rel. 96, Created) DT 13-AUG-2008 (Rel. 96, Last updated, Version 1) XX DE Carrot carlavirus WM-2008 triple gene block protein 1 gene, partial cds; DE and triple gene block protein 2, triple gene block protein 3, coat protein, DE and nucleic acid binding protein genes, complete cds. XX KW . XX OS Carrot carlavirus WM-2008 OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus; OC unclassified Carlavirus. XX RN [1] RP 1-2235 RX DOI; 10.1007/s11262-008-0276-3. RX PUBMED; 18751883. RA Menzel W., Vetten H.-J.; RT "Partial nucleotide sequence of a carlavirus from carrot (Daucus carota RT L.)"; RL Virus Genes 37(3):432-433(2008). XX RN [2] RP 1-2235 RA Menzel W., Vetten H.-J.; RT ; RL Submitted (10-JUL-2008) to the INSDC. RL Institute of Plant Diseases and Plant Protection, Leibniz University of RL Hannover, Herrenhaeuser Strasse 2, Hannover 30419, Germany XX DR MD5; d8097bfd993bbb12355e0680d149f12f. DR EuropePMC; PMC3689765; 23805334. XX FH Key Location/Qualifiers FH FT source 1..2235 FT /organism="Carrot carlavirus WM-2008" FT /host="Daucus carota" FT /mol_type="genomic RNA" FT /country="Germany" FT /db_xref="taxon:552517" FT CDS <1..159 FT /codon_start=1 FT /product="triple gene block protein 1" FT /note="TGB1" FT /db_xref="GOA:B5AZR4" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B5AZR4" FT /protein_id="ACG60021.1" FT /translation="FRGITCEVVTLLTSEETIPEDQRSEFYVALTRHREKLIILCPNAF FT FCASRQL" FT CDS 128..481 FT /codon_start=1 FT /product="triple gene block protein 2" FT /note="TGB2" FT /db_xref="GOA:B5AZR5" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:B5AZR5" FT /protein_id="ACG60022.1" FT /translation="MPFSAPPDNSKAVLAVAVGLSLAVITFALTRNNLPQVGDNIHSLP FT HGGCYSDGTKRISYFAPQEKFPSSNLLKTSNSPVIILSILGLSILIYLSSKFSTKCQIC FT GREGCEGNATGRS" FT CDS 462..668 FT /codon_start=1 FT /product="triple gene block protein 3" FT /note="TGB3" FT /db_xref="GOA:B5AZR6" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:B5AZR6" FT /protein_id="ACG60023.1" FT /translation="MPLGDLKILFLGFFCFISALAILNLLSGSSNNLCVVVITGESIKI FT SGCVFDDNFAEYARTLTIPNHWG" FT CDS 769..1671 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:B5AZR7" FT /db_xref="InterPro:IPR000052" FT /db_xref="InterPro:IPR013569" FT /db_xref="UniProtKB/TrEMBL:B5AZR7" FT /protein_id="ACG60024.1" FT /translation="MGGSSADAVKDQKKIKPEDKEAKEIEDLRVPNSRLTLEVQAEADK FT MKNHKILMERFERLKNAISDNLTNPTLSNYAMPQTQAPKIVDSYKADMTNIFAKPSIEN FT FLSLGWMPESNSMATSEQISKIMAEWEKLGVPKKSLAQATWAYCRYCVGASSSPHMDPN FT AADEQVFGHVTRDAMGAVIKKHVTLRQFNRFFAPIMWNYMITMNLPPSDWQRKNFTEDT FT KFAAFDCFDFVMNPAAHQPLEGLIRKPTKEEVIANQTFKSIALNRRAQNDRFANLGVEI FT TGGKFGCDKKMTFRESSCG" FT CDS 1738..2127 FT /codon_start=1 FT /product="nucleic acid binding protein" FT /note="NABP" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:B5AZR8" FT /protein_id="ACG60025.1" FT /translation="MHKYNLHVLCALNKAEPKLPAQVIEIIWVKSSIHRENYILSSCKP FT KGTGTSKSSVKRRAARFGRCANCGRYSHNGACKWSTSQSNSEFKDFLQIGAINYCNERP FT IRKNSVIEQVITSERLRLLNIKDVE" FT 3'UTR 2128..2235 XX SQ Sequence 2235 BP; 667 A; 385 C; 510 G; 673 T; 0 other; ttcagaggaa taacttgcga ggttgtgacc ctattgacta gtgaagaaac gatcccagaa 60 gatcagcggt cagaatttta cgtggcatta acaagacaca gggagaagct aattattttg 120 tgtccgaatg cctttttctg cgcctccaga caactctaaa gctgtgctcg ccgtagcggt 180 aggtcttagc ttagctgtaa ttacttttgc attgactagg aataatttgc ctcaagtcgg 240 ggataatatt cacagtttgc cccacggtgg ttgctattct gacggtacga aaaggatttc 300 ttatttcgct ccgcaagaga agtttccctc gagtaatttg ctcaaaactt caaatagtcc 360 tgtgataatt ttaagtatat tgggattatc tatccttatt tacttgagtt caaaattcag 420 tactaagtgc cagatttgtg gcagagaagg ttgtgagggg aatgccactg ggcgatctta 480 agatcctctt tcttgggttc ttctgtttta tttctgcatt agctattttg aatttactga 540 gtggtagttc caataacttg tgtgttgtag taataactgg ggagtcaatt aaaatcagtg 600 gttgtgtttt cgacgataat tttgcagaat acgcaagaac tttgacaata cccaaccatt 660 ggggttgatt ggtactctta ggcttaggag taactgtatt gaatattaaa tagaactgat 720 ctgagtgtgt gttttaacta gatttgtgtg ttatttctaa catttgctat gggtgggagt 780 agtgcagatg ctgtgaaaga tcaaaagaag atcaaacccg aggataaaga agctaaggag 840 attgaagatt taagggttcc caatagcagg ttgacccttg aagttcaagc tgaggctgat 900 aaaatgaaaa accacaagat cctcatggaa aggtttgaac gattgaagaa tgctattagc 960 gataatctca ctaacccaac tctttctaat tatgctatgc ctcaaactca agcgccaaag 1020 atagtcgata gttacaaggc ggacatgacg aacatttttg ccaagccatc tatcgaaaat 1080 ttcctgagtt taggatggat gcccgagtct aattcaatgg ccacttctga gcaaatatcg 1140 aaaatcatgg ctgagtggga gaagctcggg gtgcctaaga aaagcttagc ccaagctact 1200 tgggcttatt gtcggtactg tgttggtgct tcaagttctc cacatatgga tcctaacgct 1260 gcagatgagc aggtgtttgg gcacgtcact agggatgcta tgggtgctgt aatcaaaaaa 1320 cacgtgactt tgcggcaatt taatagattc tttgctccaa tcatgtggaa ttatatgatt 1380 actatgaatt tacctccatc agattggcaa cgtaagaatt tcactgaaga tacaaaattt 1440 gccgcttttg actgttttga tttcgttatg aatcctgctg ctcaccaacc tcttgaaggt 1500 ctgataagaa agccaacaaa agaggaggtc atagcgaacc aaacctttaa gagcattgct 1560 ttaaacagaa gggctcaaaa tgatcggttt gctaatctgg gcgtagaaat cactggggga 1620 aagtttggat gcgacaagaa aatgacgttc cgtgagagca gttgcggttg aaaactcaga 1680 tcaacaatat tcttgggcaa ttcagtttat aacttctgaa ttcaaaactg aaaagttatg 1740 cataagtaca atttacatgt gttgtgtgct ttgaataaag ctgagccgaa attaccggct 1800 caggttattg agataatatg ggtgaaatct tccatacata gggagaacta tatactcagt 1860 tcgtgtaaac caaaagggac gggcacttct aaaagcagtg ttaaaaggag ggccgctcga 1920 tttggaaggt gtgctaattg tggtaggtat tcccataatg gggcttgcaa gtggtcaact 1980 agtcagagta atagtgagtt caaagacttt ttgcagattg gggctattaa ttactgtaat 2040 gaacggccaa ttcgcaaaaa ctctgtgatt gaacaagtga ttacttctga aaggttaagg 2100 ctacttaata ttaaagatgt agaataaggc atttcaacgc ctcaaagtgt tcgctgatag 2160 accgtactaa tagtctattc cagaaactca gacttaactt gagtattgct ggtaagtttt 2220 atctattttg cttat 2235 //