ID EU867823; SV 1; circular; genomic DNA; STD; VRL; 1898 BP. XX AC EU867823; XX DT 18-FEB-2009 (Rel. 99, Created) DT 10-APR-2009 (Rel. 100, Last updated, Version 3) XX DE Sea Turtle Tornovirus 1 pop-variant STTV1-GA1, complete genome. XX KW . XX OS Sea turtle tornovirus 1 OC Viruses; unclassified viruses; unclassified DNA viruses; OC unclassified ssDNA viruses. XX RN [1] RP 1-1898 RX DOI; 10.1128/JVI.01946-08. RX PUBMED; 19116258. RA Ng T.F., Manire C., Borrowman K., Langer T., Ehrhart L., Breitbart M.; RT "Discovery of a novel single-stranded DNA virus from a sea turtle RT fibropapilloma by using viral metagenomics"; RL J. Virol. 83(6):2500-2509(2009). XX RN [2] RP 1-1898 RA Ng T.F.F., Manire C., Borrowman K., Langer T., Ehrhart L., Breitbart M.; RT ; RL Submitted (02-JUL-2008) to the INSDC. RL College of Marine Science, University of South Florida, 140 7th Ave South, RL Saint Petersburg, FL 33701, USA XX DR MD5; b3a7ed53ddbd9ab6b850e1fc214a34c8. XX FH Key Location/Qualifiers FH FT source 1..1898 FT /organism="Sea turtle tornovirus 1" FT /host="Chelonia mydas (green turtle)" FT /mol_type="genomic DNA" FT /country="USA:Florida" FT /collection_date="Sep-2007" FT /pop_variant="STTV1-GA1" FT /db_xref="taxon:575913" FT regulatory 1..6 FT /regulatory_class="TATA_box" FT CDS 172..858 FT /codon_start=1 FT /product="unknown" FT /note="ORF2; has low amino acid similarity to VP2 of FT Chicken anemia virus" FT /db_xref="UniProtKB/TrEMBL:C0J6N1" FT /protein_id="ACJ54473.1" FT /translation="MAQNAGEDNPDTTNPGEGTSQSFGGGNHSGATNYLDLIKLQGEYS FT FYKRHYNRALAIWKRECRESHDRICTCKDWRYHFSRAAERPGIEALQHSSQQSSRDLYS FT DPGADFYQQVQSLPQRYKPERTLQNLEREYTRVLARYKKLRKKQRQEKARARVQFTQKP FT GKRPKIKKEKRWPIDDDSTEGDTTGEEDTDGTDGDITGDDDTGGPTGDGGSFLDPSSVR FT AASRFL" FT CDS 182..703 FT /codon_start=1 FT /product="unknown" FT /note="ORF3" FT /db_xref="GOA:C0J6N2" FT /db_xref="UniProtKB/TrEMBL:C0J6N2" FT /protein_id="ACJ54474.1" FT /translation="MLEKIILTLLILVRELLRALAGGIILVLLIIWILSSYKANIAFTR FT DTITVHLPSGRESAEKAMTESVPAKTGATTSPEQLKDLALKLCSIHLSNPPAISTVTPE FT RTSTNKYKVYLSATSQKGPSKTLSVSTRGSWHVTRSSGRSSAKRRLEPEFNSPRSLERD FT LRSKKKKDGL" FT CDS 693..1625 FT /codon_start=1 FT /product="unknown" FT /note="ORF1; contains arginine-rich region" FT /db_xref="UniProtKB/TrEMBL:C0J6N3" FT /protein_id="ACJ54472.1" FT /translation="MAYRRRFYRRRHHWRRRYRWHRRRYHWRRRYRRPYRRRRLLPRSF FT VSQSRISVPVRYRPPSNIFILKGRGFRSWTSNKVTFNENSAYLDVDWMNIQLLSFFDLN FT GLNERGNIEWSHPYINQNLLQTNFNVGKHIKTKCYMWPKPQFKRLTATTSTDPTLYTNE FT NAMGTVSLATHQSSAWPTAKFISAMQMVTLGGSIQLTGRHNKLHQHTFTVPTDHDAQTG FT WIPVQNLLTTNANFGTLHGAGFRVDAWSQTTQAPSQYGWTAHSMVQPQSGLNPAGAGWG FT GFFFKTVWAFGLINPTQWSQNKSYMHSAK" FT misc_feature 1525..1832 FT /note="hypervariable region; HVR" FT regulatory 1596..1601 FT /regulatory_class="polyA_signal_sequence" FT repeat_region 1691..1802 FT /rpt_type=DIRECT FT repeat_region 1691..1703 FT /rpt_type=DIRECT FT repeat_region 1704..1714 FT /rpt_type=DIRECT FT repeat_region 1715..1727 FT /rpt_type=DIRECT FT repeat_region 1742..1754 FT /rpt_type=DIRECT FT repeat_region 1755..1765 FT /rpt_type=DIRECT FT repeat_region 1766..1778 FT /rpt_type=DIRECT FT repeat_region 1790..1802 FT /rpt_type=DIRECT XX SQ Sequence 1898 BP; 539 A; 523 C; 460 G; 376 T; 0 other; tataaatgct gctgctcttc cggacggcgg ttcctctctg ccgcgcgagg gaacagctct 60 gagcttttaa gcgagtgtgc tgcgagctgg gcgggtgcgc cgagcgctac acggagtatt 120 gccgaggctc aaggggcctt tcgggcaagc gaagccgagt aagaagggct tatggcacag 180 aatgctggag aagataatcc tgacactact aatcctggtg agggaacttc tcagagcttt 240 ggcgggggga atcattctgg tgctactaat tatctggatc ttatcaagct acaaggcgaa 300 tatagctttt acaagagaca ctataaccgt gcacttgcca tctggaagag agagtgcaga 360 gaaagccatg acagaatctg tacctgcaaa gactggcgct accacttctc ccgagcagct 420 gaaagacctg gcattgaagc tctgcagcat tcatctcagc aatcctcccg cgatctctac 480 agtgaccccg gagcggactt ctaccaacaa gtacaaagtc tacctcagcg ctacaagcca 540 gaaaggaccc tccaaaacct tgagcgtgag tacacgcggg tcctggcacg ttacaagaag 600 ctcaggaaga agcagcgcca agagaaggct agagcccgag ttcaattcac ccagaagcct 660 ggaaagagac ctaagatcaa aaaagaaaaa agatggccta tagacgacga ttctacagaa 720 ggagacacca ctggagaaga agatacagat ggcacagacg gcgatatcac tggagacgac 780 gatacaggag gccctacagg agacggaggc tccttcctag atccttcgtc agtcagagcc 840 gcatctcggt tcctgtgagg tacaggcccc ccagcaatat tttcatactc aaaggcagag 900 gcttccgcag ctggacaagc aacaaagtga ccttcaacga gaattctgca tacctggacg 960 tggactggat gaatatccaa ctcctgtcat tctttgacct caacggcctc aatgaacgtg 1020 gtaacattga atggagccac ccctacataa accagaacct cctgcagaca aacttcaatg 1080 tgggtaagca cataaagact aagtgctata tgtggcctaa gccacagttc aagagactga 1140 ccgcgacaac ctcgactgac cccactctct ataccaacga aaatgccatg gggactgtta 1200 gcctagccac ccatcagagc tcagcttggc ccacagctaa attcatctca gcaatgcaga 1260 tggtgacact aggggggtcc atacagctta ccgggagaca caacaagctc caccaacata 1320 cctttactgt cccaactgac cacgatgcac agaccggctg gatacctgtc caaaacctcc 1380 tcaccaccaa tgccaacttc gggaccctcc atggagcagg attcagagtt gacgcttggt 1440 cacagacaac gcaagcacct tcccaatacg gctggactgc ccacagcatg gtacaacccc 1500 aaagcggctt gaaccccgcc ggagcagggt gggggggctt cttctttaaa actgtatggg 1560 cctttggcct cattaaccct acccaatggt cccaaaataa aagttacatg catagtgcta 1620 aatgaaaact attgtgtatt gtcttcttcg ggggggcccg cggagtaaaa aaggatcggg 1680 cccatagtag ccatcagaga atccactata cgagccatca gagaatctac acacatagta 1740 tccatcagag aatctactat acgagccatc agagaatcca ctatacgagc catcagagaa 1800 tctaagggga ggagttgcgg tttccgcttg tcacatccgc tcctctctga ctggcctgac 1860 gcgcttcctc aggacatccc gggcgtgcct actgcccc 1898 //