ID EU862323; SV 1; circular; genomic DNA; STD; VRL; 2752 BP. XX AC EU862323; XX DT 01-APR-2009 (Rel. 100, Created) DT 07-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Tomato leaf curl Patna virus segment DNA-A, complete sequence. XX KW . XX OS Tomato leaf curl Patna virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2752 RX DOI; 10.1094/PDIS-93-5-0545B. RX AGRICOLA; IND44237897. RA Kumari P., Chattopadhyay B., Singh A.K., Chakraborty S.; RT "A New Begomovirus Species Causing Tomato Leaf Curl Disease in Patna, RT India"; RL Plant Dis. 93(5):545-545(2009). XX RN [2] RP 1-2752 RA Kumari P., Chattopadhyay B., Singh A.K., Chakraborty S.; RT "Tomato leaf curl Patna virus, a new species of Begomovirus causing leaf RT curl disease of tomato in India"; RL Unpublished. XX RN [3] RP 1-2752 RA Kumari P., Chattopadhyay B., Singh A.K., Chakraborty S.; RT ; RL Submitted (01-JUL-2008) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; 7e4df52ac500920178387f684833fe26. XX FH Key Location/Qualifiers FH FT source 1..2752 FT /organism="Tomato leaf curl Patna virus" FT /segment="DNA-A" FT /host="tomato" FT /mol_type="genomic DNA" FT /country="India:Patna" FT /collected_by="Punam Kumari" FT /db_xref="taxon:575917" FT gene 133..483 FT /gene="AV2" FT CDS 133..483 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /note="may help in viral movement" FT /db_xref="GOA:C1IW18" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:C1IW18" FT /protein_id="ACL00850.1" FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDL FT ILVIRARDYVEASRRYSHFHSRFQGSSPAELRQPICQPCCCPHCPRHKQKEDMGQSAHV FT QKAQDVQTVQKP" FT gene complement(275..688) FT /gene="AC5" FT CDS complement(275..688) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:C1IW19" FT /protein_id="ACL00853.1" FT /translation="MILGLDVLIHPDLTQNINRLHTKSLTHTVSKPITTSNIRNTYHLA FT CMGYIMSLFIRLDLTRTFAPLGNIRASVQSVHLGLFVHGPIDPCPPFVCDEDSGGNSTA FT DIWAVEVQPATNLGSGSGNDYIGGTLRHNLLHG" FT gene 293..1066 FT /gene="AV1" FT CDS 293..1066 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="required for encapsidation and vector transmission" FT /db_xref="GOA:C1IW20" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C1IW20" FT /protein_id="ACL00851.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYVSRAVAPTVLVTNKRRTW FT VNRPMYKKPKMYRLYRSPDVPKGCEGPCKVQSYEQRHDIAHTGKVICVSDVTRGNGLTH FT RVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTAMDFGQVFNMYDNE FT PSTATVKNDMRDRFQVLRKFTATVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYEN FT HTENALLMYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1063..1467) FT /gene="AC3" FT CDS complement(1063..1467) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="REn" FT /db_xref="GOA:C1IW21" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C1IW21" FT /protein_id="ACL00855.1" FT /translation="MDSRTGELITATQEESGVYIWTVKNPLYFKISQHHERPFLSNNDI FT ITIQVQFNYNLRKALGIHQCFLICRIWTRLRPQTWRFLRVFKYQCMKYLNSLGVISINN FT VIRAMSHVLYNVLEGTIDAELSHIIKFNIY" FT gene complement(1208..1615) FT /gene="AC2" FT CDS complement(1208..1615) FT /codon_start=1 FT /gene="AC2" FT /product="trans-activator protein" FT /note="TrAp; suppressor of PTGS" FT /db_xref="GOA:C1IW22" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C1IW22" FT /protein_id="ACL00854.1" FT /translation="MQNSSPSPSRCTQVPIKVQHRIAKKRPVRRRRIDLPCGCSYYFGL FT DCASHGFTHRGTHHCNSGREWRVYLDGQKSPLFQDIPTPRETISIQQRHNHHTSPVQLQ FT PEESVGDTPVFSNLPNLDSFTSSDLAFLKSI" FT gene complement(1521..2603) FT /gene="AC1" FT CDS complement(1521..2603) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiation protein" FT /note="essential for replication" FT /db_xref="GOA:C1IW23" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C1IW23" FT /protein_id="ACL00852.1" FT /translation="MPRADVFRLNAKNYFLTYPKCSLTKEEALSQLENLQTPVNKKYIR FT VCRELHENGEPHLHVLIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYL FT EKDGDTLDWGEFQIDGRSARGGQQTANDAYATALNASSKSEALRVIKELAPKDYVLQFH FT NLNANLDRIFAPPLEVFVSPFLSSSFDQVPEELECWVSENVRDAAARPWRPVSIVIEGE FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPMQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKDLGIKNAEFFTLTEPL FT YSGTHQSPAQNSQEETSSQT" FT gene complement(2144..2452) FT /gene="AC4" FT CDS complement(2144..2452) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="required for viral pathogenicity and symptom FT development" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C1IW24" FT /protein_id="ACL00856.1" FT /translation="MRMGNLIFTCSSSSKGNTSARITDSSTWYPQPGQHISIRTFRELN FT QAQTSSPIWRRTETPSTGESFRSMEDLQEGVNRQPMTLTPQHLTQAVSQRLLESLRN" XX SQ Sequence 2752 BP; 743 A; 552 C; 606 G; 851 T; 0 other; accggatggc cgcgattttt ttaaaagtgg tcccccccac tacctcgtgt cggccaataa 60 aaacgctccc tcagagttaa attagtggtg gtccctctat ttatatcttg gtcaccaagt 120 ttgttttcag aaatgtggga tccacttctc aacgagtttc ctgaaaccgt acatggtttt 180 aggtgtatgt tagcaattaa gtatttgcag ttagtagaaa atacgtattc tccagacaca 240 ttaggttacg atttaattcg tgatttaata ttagttatcc gtgcaagaga ttatgtcgaa 300 gcgtcccgcc gatatagtca tttccactcc cgcttccaag gttcgtcgcc ggctgaactt 360 cgacagccca tatgtcagcc gtgctgttgc ccccactgtc ctcgtcacaa acaaaaggag 420 gacatgggtc aatcggccca tgtacaaaaa gcccaagatg tacagactgt acagaagccc 480 tgatgttccc aaggggtgcg aaggtccgtg taaggtccag tcttatgaac agagacatga 540 tatagcccat acaggcaagg tgatatgtgt ttctgatgtt actcgtggta atgggcttac 600 tcaccgtgtg ggtaagagat tttgtgtgaa gtctatttat gttttgggta agatctggat 660 ggatgagaac atcaagacca agaatcatac gaacactgtt atgttcttcc tggttcgtga 720 tagaaggccc tttggtactg ctatggattt tggacaggtt ttcaacatgt atgacaatga 780 acccagtact gcaactgtca agaatgatat gagagatcga tttcaggtct taaggaaatt 840 tactgcaacg gttacaggtg gtcagtatgc ttccaaggaa caggcattag ttaggaaatt 900 tatgaagatt aataattatg tagtgtataa tcatcaagag gctgccaagt atgaaaatca 960 tactgagaac gctcttctaa tgtatatggc atgtacacat gccagtaatc ctgtgtatgc 1020 aactttgaag atcagaatct atttttatga ttctgttcag aattaataaa tattgaattt 1080 tattatatgg gataattcgg catcaattgt gccttctaat acattgtaca atacatgaga 1140 cattgcccta attacattat taatactaat aactcctaaa ctatttaaat atttcataca 1200 ttgatattta aatactctta agaaacgcca agtctgagga cgtaaacgag tccagattcg 1260 gcaaattaga aaacactggt gtatccccaa cgctttcctc aggttgtagt tgaactggac 1320 ttgtatggtg attatgtcgt tgttggatag aaatggtctc tcgtggtgtt gggatatctt 1380 gaaatagagg ggatttttga ccgtccaaat atacacgcca ctctcttcct gagttgcagt 1440 gatgagttcc cctgtgcgtg aatccatgtg atgcgcagtc aagtccaaaa tagtaagagc 1500 aaccgcaggg aagatctatc ctacgtctgc gaactggtct cttcttggct attctgtgct 1560 ggactttgat gggtacctga gtacaacggc tcggtgaggg tgaagaattc tgcattcttt 1620 atgcccagat cttttagtgc tgaattcttt tcctcatcca agtactcttt atatgatgat 1680 gtcgggcctg gattgcagag gaagatagtg ggaattccac ctttaatttg catgggcttc 1740 ccgtactttg tgttgctttg ccagtccctt tgggccccca tgaactcctt aaagtgcttt 1800 agatagtggg gatcgacgtc atcaatgacg ttgtaccagg catcattact gtacaccttt 1860 ggactcaggt caaggtgacc acataaatag ttatgtggac ccagagacct ggcccacatg 1920 gtcttccctg ttctactctc accctctatg actatactga cgggtctcca aggccgcgca 1980 gcggcatccc ttacattttc tgatacccag cattcaagtt cttctggaac ttgatcgaaa 2040 gaagaagata aaaagggaga aacaaaaacc tctaaaggag gtgcaaaaat cctatctaaa 2100 ttagcattta aattatgaaa ttgtagtaca taatctttgg gtgctaattc cttaatgact 2160 ctaagagcct ctgacttact gcttgcgtta agtgctgtgg cgtaagcgtc attggctgtc 2220 tgttgacccc ctcttgcaga tcttccatcg atctgaaact ctccccagtc gagggtgtct 2280 ccgtccttct ccagatagga cttgacgtct gagcttgatt tagctccctg aatgttcgga 2340 tggaaatgtg ctgacctggt tggggatacc aggtcgaaga atctgttatt cgtgcactgg 2400 tatttccctt cgaactggat gagcacgtga agatgaggtt ccccattctc atgaagttcc 2460 ctgcagactc ttatgtattt tttgtttact ggggtttgta ggttttctaa ttgtgagagg 2520 gcttcttctt tagttagaga gcatttggga taagtgagaa aatagttttt tgcatttaat 2580 ctaaaaacgt ccgcacgtgg cattttggca atcggtgtac aaactaattc tatggcaatc 2640 ggtgtattgg ggtgcaatat atatgtgtac accaaatggc attattgtaa tttgggaaag 2700 aaattcaaaa ttcaaatttc aaaattccca aagcggccat ccgtataata tt 2752 //