ID   EU852927; SV 1; linear; genomic RNA; STD; VRL; 1817 BP.
XX
AC   EU852927;
XX
DT   01-JUL-2009 (Rel. 101, Created)
DT   28-JAN-2011 (Rel. 107, Last updated, Version 2)
XX
DE   Pelargonium line pattern virus isolate ITA4 clone 1 putative movement
DE   protein (p7), putative movement protein (p9), and coat protein (CP) genes,
DE   complete cds.
XX
KW   .
XX
OS   Pelargonium line pattern virus
OC   Viruses; Riboviria; Tombusviridae; Procedovirinae; Pelarspovirus.
XX
RN   [1]
RP   1-1817
RX   DOI; 10.1016/j.virusres.2010.10.022.
RX   PUBMED; 20979982.
RA   Castano A., Ruiz L., Elena S.F., Hernandez C.;
RT   "Population differentiation and selective constraints in Pelargonium line
RT   pattern virus";
RL   Virus Res. 155(1):274-282(2011).
XX
RN   [2]
RP   1-1817
RA   Castano A., Ruiz L., Hernandez C.;
RT   "Sequence variability of distinct isolates of Pelargonium line pattern
RT   virus";
RL   Unpublished.
XX
RN   [3]
RP   1-1817
RA   Castano A., Ruiz L., Hernandez C.;
RT   ;
RL   Submitted (26-JUN-2008) to the INSDC.
RL   Instituto de Biologia Molecular y Celular de Plantas, Ingeniero Fausto Elio
RL   s/n, Valencia, Valencia 46022, Spain
XX
DR   MD5; 2ff1c96e650f6f079ff2a61b7325d762.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1817
FT                   /organism="Pelargonium line pattern virus"
FT                   /host="Pelargonium zonale"
FT                   /lab_host="Chenopodium quinoa"
FT                   /isolate="ITA4"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /clone="1"
FT                   /db_xref="taxon:167019"
FT   gene            208..399
FT                   /gene="p7"
FT   CDS             208..399
FT                   /codon_start=1
FT                   /gene="p7"
FT                   /product="putative movement protein"
FT                   /db_xref="GOA:C6F3N8"
FT                   /db_xref="InterPro:IPR007982"
FT                   /db_xref="UniProtKB/TrEMBL:C6F3N8"
FT                   /protein_id="ACJ38481.1"
FT                   /translation="MDIQSKDSNLSVKEAGKSAKRGSTKNKLDVAHSGVSKGTSRDIVG
FT                   ANFVTVADKVEFVVHLNF"
FT   gene            305..571
FT                   /gene="p9"
FT   CDS             305..571
FT                   /codon_start=1
FT                   /transl_except=(pos:305..307,aa:Met)
FT                   /gene="p9"
FT                   /product="putative movement protein"
FT                   /note="non-canonical start codon"
FT                   /db_xref="GOA:C6F3N3"
FT                   /db_xref="UniProtKB/TrEMBL:C6F3N3"
FT                   /protein_id="ACJ38482.1"
FT                   /translation="MEYPRVHLVTLSVLILSQLLIKWSLWSISISDFLPQPHLLHPNLL
FT                   VCIVLCIFFSSVLSQGQSYSYSYFSTSTSDKFISVAVGNGGQR"
FT   gene            555..1571
FT                   /gene="CP"
FT   CDS             555..1571
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:C6F3P0"
FT                   /db_xref="InterPro:IPR000937"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:C6F3P0"
FT                   /protein_id="ACJ38483.1"
FT                   /translation="MAAKDNPAVIAAVARREQWAIKLQSKGWGSLSKAQKATARSYGIG
FT                   NPPTVVVPRTTRLVAGNPTNARRARGEPGNAKMGTTITKQEYMGELHSSSKIETYLLDP
FT                   KNVRSFPQLSGLAIGYNKYKITDFKVRYSPKCSDSECGLTIAYSSDSSDLPPKNKFNLF
FT                   SMNHKYETAAHKPLLVTLPVSKETRFLRDKCTDDSKLVDSGAVHVLVDGKHEGRIGELF
FT                   FELTIVFSEPTFCNHHSQVIKGLKESEGPEYVKVEPDKESVKLVFQAAGAYLISIVASK
FT                   LERIGQLGASEGDKLVVESTDKSACLCRIEAEQPGSAVVLVYASREAITLRAYINKL"
XX
SQ   Sequence 1817 BP; 485 A; 436 C; 466 G; 430 T; 0 other;
     gaaaatggcc ttctacgggg actattattg gaagggggtc aatcagcata acggcaagta        60
     tgaaccggtg accgaggaag ctaggcactc attccacttg gcgtttgggg ttagccctga       120
     ccaacagttg gctctggaag ctatatactc tcgcaagtcg ctactttggg agtcctcccc       180
     ctttacattt gaagttggcg ctatcgaatg gatattcagt caaaagattc caatctgagt       240
     gtaaaggaag cagggaaatc agcaaagcgc ggaagtacaa agaacaagct agacgtggct       300
     cacagtggag tatccaaggg tacatctcgt gacattgtcg gtgctaattt tgtcacagtt       360
     gctgataaag tggagtttgt ggtccatctc aatttctgat ttcctaccac agccacactt       420
     attgcaccct aatctacttg tctgcattgt gttgtgcatt ttctttagtt cagttcttag       480
     ccagggacag agttatagtt atagttactt ttcaactagc accagtgata aattcatctc       540
     agtagctgta ggaaatggcg gccaaagata atccagcagt catcgcagcc gtggctaggc       600
     gggagcagtg ggcaatcaag cttcaatcca agggttgggg ctccttgtct aaagcccaga       660
     aagccaccgc acgctcgtac gggataggaa accctccaac agtcgtggtg cctcgcacta       720
     cccggctggt ggctgggaat cccacgaacg cacggcgggc gcgaggagag cctggcaatg       780
     ccaaaatggg caccaccata accaagcagg aatacatggg cgagcttcat tcttcttcaa       840
     agattgaaac ttacttgctc gaccccaaga atgtaaggag ctttcctcag ttaagcgggc       900
     ttgctatcgg ctataacaag tacaagatca ctgacttcaa ggtgcggtac agtcccaaat       960
     gcagcgacag tgagtgtggg ttgaccatcg cttactccag cgactcttct gatctaccgc      1020
     cgaagaacaa attcaacttg tttagcatga accacaagta tgaaacagcc gcgcacaagc      1080
     cactcctagt aacacttccc gtgtctaaag agaccagatt cttgcgggat aagtgtactg      1140
     atgactccaa actcgtagac agtggagcgg tgcatgtcct ggtggacggg aaacacgaag      1200
     gcaggatcgg agaacttttc ttcgagttaa ccatcgtgtt ttctgaacct accttctgca      1260
     atcaccactc ccaagtcatc aaagggctca aggagagtga aggacccgag tacgtcaagg      1320
     ttgagcctga caaggaaagc gtgaaacttg ttttccaggc agcgggggca tacttaattt      1380
     ctatagtggc ctccaaacta gagcgaatcg ggcagctggg tgcttctgaa ggcgacaagc      1440
     tggtagttga aagtactgat aagagtgcct gcctctgtag aatagaggca gagcaaccag      1500
     gtagcgctgt ggtattagtt tatgccagca gggaggccat taccctgcga gcttacatca      1560
     acaagctatg aggacagcca ctgcggtggg gtcagtctcc tggtgcgcca acacccagaa      1620
     ggggagacaa cttcagtggt tctcaacccg atgcttaatg taagtttaag aaaatccaaa      1680
     aacagagtgt tactgctttc agtgtgcgag ctttatttgc tcacttcctc cgtcgataaa      1740
     atcccgaatt ttcgggtggg cttcggcgga catccttaat gaagaacggg ggggtaaccc      1800
     acccccctga tctgccc                                                     1817
//