ID   EU852924; SV 1; linear; genomic RNA; STD; VRL; 1816 BP.
XX
AC   EU852924;
XX
DT   01-JUL-2009 (Rel. 101, Created)
DT   28-JAN-2011 (Rel. 107, Last updated, Version 2)
XX
DE   Pelargonium line pattern virus isolate USA1 clone 2 putative movement
DE   protein (p7), putative movement protein (p9), and coat protein (CP) genes,
DE   complete cds.
XX
KW   .
XX
OS   Pelargonium line pattern virus
OC   Viruses; Riboviria; Tombusviridae; Procedovirinae; Pelarspovirus.
XX
RN   [1]
RP   1-1816
RX   DOI; 10.1016/j.virusres.2010.10.022.
RX   PUBMED; 20979982.
RA   Castano A., Ruiz L., Elena S.F., Hernandez C.;
RT   "Population differentiation and selective constraints in Pelargonium line
RT   pattern virus";
RL   Virus Res. 155(1):274-282(2011).
XX
RN   [2]
RP   1-1816
RA   Castano A., Ruiz L., Hernandez C.;
RT   "Sequence variability of distinct isolates of Pelargonium line pattern
RT   virus";
RL   Unpublished.
XX
RN   [3]
RP   1-1816
RA   Castano A., Ruiz L., Hernandez C.;
RT   ;
RL   Submitted (26-JUN-2008) to the INSDC.
RL   Instituto de Biologia Molecular y Celular de Plantas, Ingeniero Fausto Elio
RL   s/n, Valencia, Valencia 46022, Spain
XX
DR   MD5; c1807d30b1ddb75b05fcf41a24cbd26a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1816
FT                   /organism="Pelargonium line pattern virus"
FT                   /host="Pelargonium peltatum"
FT                   /lab_host="Chenopodium quinoa"
FT                   /isolate="USA1"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /clone="2"
FT                   /db_xref="taxon:167019"
FT   gene            208..399
FT                   /gene="p7"
FT   CDS             208..399
FT                   /codon_start=1
FT                   /gene="p7"
FT                   /product="putative movement protein"
FT                   /db_xref="GOA:C6F3M9"
FT                   /db_xref="InterPro:IPR007982"
FT                   /db_xref="UniProtKB/TrEMBL:C6F3M9"
FT                   /protein_id="ACJ38472.1"
FT                   /translation="MDIQPKVTNLSVKEAGKSAKRGSTKNKLDVAHSGVSKGTSRDLVG
FT                   ANFVTVADKVEFVVHLNF"
FT   gene            305..571
FT                   /gene="p9"
FT   CDS             305..571
FT                   /codon_start=1
FT                   /transl_except=(pos:305..307,aa:Met)
FT                   /gene="p9"
FT                   /product="putative movement protein"
FT                   /note="non-canonical start codon"
FT                   /db_xref="GOA:C6F3N0"
FT                   /db_xref="UniProtKB/TrEMBL:C6F3N0"
FT                   /protein_id="ACJ38473.1"
FT                   /translation="MECPRAHLAILSVLILSQLLIKWSLWSISISDFLPQPHLLHPNLL
FT                   VCIVLCIFFSSVLSQGQSYSYSYISTSTSDKFISVAVGNGGQG"
FT   gene            555..1571
FT                   /gene="CP"
FT   CDS             555..1571
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:C6F3N1"
FT                   /db_xref="InterPro:IPR000937"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:C6F3N1"
FT                   /protein_id="ACJ38474.1"
FT                   /translation="MAAKDNPAVIAAVARREQWAIKLQSKGWGSLSKAQKATARSYGIG
FT                   NLPTAVVPRTTRLVAGNPTNARRARGEPGNAKMGTTITKQEYMGELRSSSKIETYLLDP
FT                   KNVRSFPQLSGLAIGYNKYKITDFKVRYSPKCSDSGCGLTIAYSSDSSDPPPKNKFNLF
FT                   SMNHKYETAAHKPLLVTLPVSKETRFLRDKCSDDSKLVDSGAVHVLVDGNHEGRLGELF
FT                   FELTIVFSEPTFCNHHSQVIKGIKESEGPEYVKVEPDKETVKLVFQAAGAYLISIVASK
FT                   LERIGQLGASEGDKLVVESADKSACLCRMEAEQPGSAIVLVYASREAITLRAYINKL"
XX
SQ   Sequence 1816 BP; 477 A; 448 C; 474 G; 417 T; 0 other;
     gaaaatggcc ttctacgggg actactattg gaagtgggtt aaccagcaca gcggcaagta        60
     tgagccggtg accgaggcag ctcggcactc attccacttg gcgtttggag tcagccctga       120
     ccaacagttg gccctagagg ccatatactc tcgcaagtcg ctactttggg aggcctcccc       180
     ctttacattt gaagttggcg ctatcgaatg gatattcaac caaaagttac caatctgagt       240
     gtaaaggaag cagggaaatc agcaaagcgt ggaagtacga agaacaagct cgacgtagct       300
     catagtggag tgtccaaggg cacatctcgc gatcttgtcg gtgctaattt tgtcacagtt       360
     gctgataaag tggagtttgt ggtccatctc aatttctgat ttcttaccac agccacattt       420
     gttgcacccc aatttacttg tctgcatcgt gttgtgcatc ttcttcagtt cagttcttag       480
     ccagggacag agttatagtt atagttatat ttcaaccagc actagtgata aattcatctc       540
     agtagctgta ggaaatggcg gccaaggata atccggcagt catcgcagcc gtggcaagac       600
     gggagcagtg ggcaatcaag ctccaatcca aaggttgggg ctctttgtcc aaagcccaga       660
     aagccacggc acgctcgtac gggataggga accttccaac tgccgtagtg ccccgcacaa       720
     ctcggctggt ggctgggaac cccaccaatg cacggcgtgc gcggggagag cctggcaatg       780
     ccaaaatggg caccaccata accaagcagg aatacatggg cgagctacgt tcttcttcga       840
     agattgaaac ctatctgctc gaccccaaga atgtgaggag cttccctcag ttaagcgggc       900
     ttgcaatcgg ctataacaag tacaagatca ctgacttcaa ggtgcggtac agtcccaaat       960
     gtagcgacag tgggtgtggg ttgaccatag cttactccag cgactcatct gatccaccgc      1020
     cgaagaacaa attcaacttg tttagcatga accacaagta tgaaacggcc gcgcacaagc      1080
     cactcctagt aacacttccc gtgtctaaag agaccagatt cttgcgggac aagtgttctg      1140
     atgattccaa gcttgtggac agtggagcgg tgcatgtcct ggtggacggg aatcacgaag      1200
     gcaggctcgg cgaacttttc ttcgagttaa ccatcgtgtt ttccgaacct accttctgca      1260
     atcaccactc ccaagtcatc aaaggaatca aggagagtga agggcccgaa tacgtcaaag      1320
     ttgagcctga taaggagacc gtaaaacttg ttttccaggc agcgggggca tacttaattt      1380
     ctatagtggc ctccaaacta gagcgaatcg ggcagcttgg agcttctgaa ggtgacaagc      1440
     tggtagttga gagtgctgat aagagtgcct gcctctgtag aatggaggca gagcaaccag      1500
     gtagtgctat agtattagtt tatgccagca gggaggccat taccctgcga gcttacatca      1560
     acaagctatg aggaaagcca ctgcggtggg gtcagtctcc tggtgcgcca acacccagaa      1620
     ggggagacaa cttcagtggt tcaaaacccg acgcttagtg taagtctaga aaaaccaaaa      1680
     acagagtgct actgctttca gtgtgcgagc tttatttgct cacttcctcc gtcgataaaa      1740
     tcccgagttt tcgggtgggc tccggcggac atccttaatg aagaacgggg gggtaaccca      1800
     cccccctgat ctgccc                                                      1816
//