ID   EU852918; SV 1; linear; genomic RNA; STD; VRL; 1817 BP.
XX
AC   EU852918;
XX
DT   01-JUL-2009 (Rel. 101, Created)
DT   28-JAN-2011 (Rel. 107, Last updated, Version 2)
XX
DE   Pelargonium line pattern virus isolate SPA4 clone 2 putative movement
DE   protein (p7), putative movement protein (p9), and coat protein (CP) genes,
DE   complete cds.
XX
KW   .
XX
OS   Pelargonium line pattern virus
OC   Viruses; Riboviria; Tombusviridae; Procedovirinae; Pelarspovirus.
XX
RN   [1]
RP   1-1817
RX   DOI; 10.1016/j.virusres.2010.10.022.
RX   PUBMED; 20979982.
RA   Castano A., Ruiz L., Elena S.F., Hernandez C.;
RT   "Population differentiation and selective constraints in Pelargonium line
RT   pattern virus";
RL   Virus Res. 155(1):274-282(2011).
XX
RN   [2]
RP   1-1817
RA   Castano A., Ruiz L., Hernandez C.;
RT   "Sequence variability of distinct isolates of Pelargonium line pattern
RT   virus";
RL   Unpublished.
XX
RN   [3]
RP   1-1817
RA   Castano A., Ruiz L., Hernandez C.;
RT   ;
RL   Submitted (26-JUN-2008) to the INSDC.
RL   Instituto de Biologia Molecular y Celular de Plantas, Ingeniero Fausto Elio
RL   s/n, Valencia, Valencia 46022, Spain
XX
DR   MD5; 80b4b88acf5c45cf8f7a666a43346f28.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1817
FT                   /organism="Pelargonium line pattern virus"
FT                   /host="Pelargonium zonale"
FT                   /lab_host="Chenopodium quinoa"
FT                   /isolate="SPA4"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /clone="2"
FT                   /db_xref="taxon:167019"
FT   gene            208..399
FT                   /gene="p7"
FT   CDS             208..399
FT                   /codon_start=1
FT                   /gene="p7"
FT                   /product="putative movement protein"
FT                   /db_xref="GOA:C6F399"
FT                   /db_xref="InterPro:IPR007982"
FT                   /db_xref="UniProtKB/TrEMBL:C6F399"
FT                   /protein_id="ACJ38454.1"
FT                   /translation="MDIQSKDTNLSVKEPGKSAKRGSTKNKLDIAHSGVSKGTSRDLVG
FT                   ANFVTVADKVEFVVHLHF"
FT   gene            305..571
FT                   /gene="p9"
FT   CDS             305..571
FT                   /codon_start=1
FT                   /transl_except=(pos:305..307,aa:Met)
FT                   /gene="p9"
FT                   /product="putative movement protein"
FT                   /note="non-canonical start codon"
FT                   /db_xref="GOA:C6F3L2"
FT                   /db_xref="UniProtKB/TrEMBL:C6F3L2"
FT                   /protein_id="ACJ38455.1"
FT                   /translation="MEYPRVHLAILSVLILSQLLIKWNLWSISISSCLPQPHLLHPNLL
FT                   VCIVLCIFFCSVLSQGQSYSYSYFSTSTNDKFISVAVGNGGQG"
FT   gene            555..1571
FT                   /gene="CP"
FT   CDS             555..1571
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:C6F3L3"
FT                   /db_xref="InterPro:IPR000937"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:C6F3L3"
FT                   /protein_id="ACJ38456.1"
FT                   /translation="MAAKDNPAVLAAVARREQWAIKLQSKGWGSLSKAQKATARSYGIG
FT                   NPPTVVVPRTTRLVAGNPMNARRARGEPGNAKMGTTITKQEYMGELHSSSKIETYLLDP
FT                   KNVRSFPQLSGLAIGYNKYKITDFKVRYSPKCSDSECGLTIAYSGDSSDPPPKNKFNLF
FT                   SMNNKYETAAHKPLLVTLPVSKETRILRDKCTDDSKLVDSGAVHVLVDGNHEGRLGELF
FT                   FELTIVFSEPTFCNHHSQVIKGLKESEGPEYVKLEPNKETVKLVFQAAGAYLISIVASK
FT                   LERIGQLGASEGDKLVVESADKSACLCRIEAEQPGSAIVLVYASREAITLRAYINKL"
XX
SQ   Sequence 1817 BP; 484 A; 451 C; 467 G; 415 T; 0 other;
     gaaaatggcc ttctacgggg actactattg gaagtgggtc aaccagcata acggcaagta        60
     tgaaccggtg actgaggaag ctcggcactc attccacttg gcgtttgggg ttagccctga       120
     ccaacagttg gccttggagg ctatatactc tcgcaagtcg ctactttggg agtcctcccc       180
     ctttacattt gaagttggcg ctatcgaatg gatattcaat caaaagatac caatctaagt       240
     gtaaaggagc cggggaaatc agcaaagcgc ggaagcacaa agaacaagct agacatagcg       300
     cacagtggag tatccaaggg tacatctcgc gatcttgtcg gtgctaattt tgtcacagtt       360
     gctgataaag tggaatttgt ggtccatctc catttctagt tgcttaccac agccacattt       420
     gttgcacccc aacctacttg tctgcattgt gttgtgcatc ttcttttgtt cagttcttag       480
     ccagggacag agttatagtt atagttactt ttctaccagc accaatgata aattcatctc       540
     agtagctgta ggaaatggcg gccaaggata atccggcagt cctcgcagcc gtggcgaggc       600
     gggaacaatg ggcaatcaag cttcaatcca agggttgggg ctccctgtct aaggcccaga       660
     aagccactgc acgctcgtac ggaataggga accccccgac agtcgtggtg ccacgcacca       720
     cccggctggt ggctgggaac cccatgaacg cgcggcgggc gcggggagag cctggcaatg       780
     ccaaaatggg caccaccata accaagcagg aatacatggg cgagcttcat tcttcatcaa       840
     agattgaaac atacttgctc gaccccaaaa atgtgaggag cttccctcag ttaagcgggc       900
     ttgcaatcgg ctacaacaag tacaagatta ctgacttcaa ggtgcggtac agtcccaaat       960
     gtagcgacag tgagtgtggg ttaaccatag cttactccgg cgactcttca gacccaccgc      1020
     cgaagaacaa attcaacttg tttagcatga acaacaagta cgaaacagcc gcgcacaagc      1080
     cactcctagt aacacttccc gtgtctaaag agaccagaat cttgcgggat aagtgtactg      1140
     atgattccaa actcgtagac agtggggcgg tgcatgtcct ggtagacggg aatcacgaag      1200
     gcaggctcgg agaacttttc ttcgagttaa ccattgtgtt ctctgaacca accttttgca      1260
     atcaccactc ccaagtcatc aaaggactca aagagagtga aggacccgaa tatgtcaaac      1320
     tcgagcctaa caaggagacc gtaaaactgg ttttccaggc agcgggggcg tacttaatct      1380
     ctatagtggc ctccaaacta gagcgaatcg ggcagcttgg tgcttctgaa ggtgacaagc      1440
     tggtagttga gagtgctgat aagagtgcct gcctctgtag aatagaggcg gagcaacccg      1500
     gtagtgctat agtattagtt tatgccagca gggaggctat taccctgcga gcttacatca      1560
     acaagctatg aggaaagcca ctgcggtggg gtcagtctcc tggtgcgcca acacccagaa      1620
     ggggagacaa cttcagtggt tgacaacccg acgcttagtg taagccttga agaatccaaa      1680
     aacagagtgc tactgctttc agtgtgcgag ctttatttgc tcacttcctc cgtcgataaa      1740
     atcccgattt ttccggtggg cttcggcgga catccttgat gaagaacggg ggggtaaccc      1800
     acccccctga tctgccc                                                     1817
//