Dbfetch
ID EU852918; SV 1; linear; genomic RNA; STD; VRL; 1817 BP. XX AC EU852918; XX DT 01-JUL-2009 (Rel. 101, Created) DT 28-JAN-2011 (Rel. 107, Last updated, Version 2) XX DE Pelargonium line pattern virus isolate SPA4 clone 2 putative movement DE protein (p7), putative movement protein (p9), and coat protein (CP) genes, DE complete cds. XX KW . XX OS Pelargonium line pattern virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Pelarspovirus. XX RN [1] RP 1-1817 RX DOI; 10.1016/j.virusres.2010.10.022. RX PUBMED; 20979982. RA Castano A., Ruiz L., Elena S.F., Hernandez C.; RT "Population differentiation and selective constraints in Pelargonium line RT pattern virus"; RL Virus Res. 155(1):274-282(2011). XX RN [2] RP 1-1817 RA Castano A., Ruiz L., Hernandez C.; RT "Sequence variability of distinct isolates of Pelargonium line pattern RT virus"; RL Unpublished. XX RN [3] RP 1-1817 RA Castano A., Ruiz L., Hernandez C.; RT ; RL Submitted (26-JUN-2008) to the INSDC. RL Instituto de Biologia Molecular y Celular de Plantas, Ingeniero Fausto Elio RL s/n, Valencia, Valencia 46022, Spain XX DR MD5; 80b4b88acf5c45cf8f7a666a43346f28. XX FH Key Location/Qualifiers FH FT source 1..1817 FT /organism="Pelargonium line pattern virus" FT /host="Pelargonium zonale" FT /lab_host="Chenopodium quinoa" FT /isolate="SPA4" FT /mol_type="genomic RNA" FT /country="Spain" FT /clone="2" FT /db_xref="taxon:167019" FT gene 208..399 FT /gene="p7" FT CDS 208..399 FT /codon_start=1 FT /gene="p7" FT /product="putative movement protein" FT /db_xref="GOA:C6F399" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:C6F399" FT /protein_id="ACJ38454.1" FT /translation="MDIQSKDTNLSVKEPGKSAKRGSTKNKLDIAHSGVSKGTSRDLVG FT ANFVTVADKVEFVVHLHF" FT gene 305..571 FT /gene="p9" FT CDS 305..571 FT /codon_start=1 FT /transl_except=(pos:305..307,aa:Met) FT /gene="p9" FT /product="putative movement protein" FT /note="non-canonical start codon" FT /db_xref="GOA:C6F3L2" FT /db_xref="UniProtKB/TrEMBL:C6F3L2" FT /protein_id="ACJ38455.1" FT /translation="MEYPRVHLAILSVLILSQLLIKWNLWSISISSCLPQPHLLHPNLL FT VCIVLCIFFCSVLSQGQSYSYSYFSTSTNDKFISVAVGNGGQG" FT gene 555..1571 FT /gene="CP" FT CDS 555..1571 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:C6F3L3" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C6F3L3" FT /protein_id="ACJ38456.1" FT /translation="MAAKDNPAVLAAVARREQWAIKLQSKGWGSLSKAQKATARSYGIG FT NPPTVVVPRTTRLVAGNPMNARRARGEPGNAKMGTTITKQEYMGELHSSSKIETYLLDP FT KNVRSFPQLSGLAIGYNKYKITDFKVRYSPKCSDSECGLTIAYSGDSSDPPPKNKFNLF FT SMNNKYETAAHKPLLVTLPVSKETRILRDKCTDDSKLVDSGAVHVLVDGNHEGRLGELF FT FELTIVFSEPTFCNHHSQVIKGLKESEGPEYVKLEPNKETVKLVFQAAGAYLISIVASK FT LERIGQLGASEGDKLVVESADKSACLCRIEAEQPGSAIVLVYASREAITLRAYINKL" XX SQ Sequence 1817 BP; 484 A; 451 C; 467 G; 415 T; 0 other; gaaaatggcc ttctacgggg actactattg gaagtgggtc aaccagcata acggcaagta 60 tgaaccggtg actgaggaag ctcggcactc attccacttg gcgtttgggg ttagccctga 120 ccaacagttg gccttggagg ctatatactc tcgcaagtcg ctactttggg agtcctcccc 180 ctttacattt gaagttggcg ctatcgaatg gatattcaat caaaagatac caatctaagt 240 gtaaaggagc cggggaaatc agcaaagcgc ggaagcacaa agaacaagct agacatagcg 300 cacagtggag tatccaaggg tacatctcgc gatcttgtcg gtgctaattt tgtcacagtt 360 gctgataaag tggaatttgt ggtccatctc catttctagt tgcttaccac agccacattt 420 gttgcacccc aacctacttg tctgcattgt gttgtgcatc ttcttttgtt cagttcttag 480 ccagggacag agttatagtt atagttactt ttctaccagc accaatgata aattcatctc 540 agtagctgta ggaaatggcg gccaaggata atccggcagt cctcgcagcc gtggcgaggc 600 gggaacaatg ggcaatcaag cttcaatcca agggttgggg ctccctgtct aaggcccaga 660 aagccactgc acgctcgtac ggaataggga accccccgac agtcgtggtg ccacgcacca 720 cccggctggt ggctgggaac cccatgaacg cgcggcgggc gcggggagag cctggcaatg 780 ccaaaatggg caccaccata accaagcagg aatacatggg cgagcttcat tcttcatcaa 840 agattgaaac atacttgctc gaccccaaaa atgtgaggag cttccctcag ttaagcgggc 900 ttgcaatcgg ctacaacaag tacaagatta ctgacttcaa ggtgcggtac agtcccaaat 960 gtagcgacag tgagtgtggg ttaaccatag cttactccgg cgactcttca gacccaccgc 1020 cgaagaacaa attcaacttg tttagcatga acaacaagta cgaaacagcc gcgcacaagc 1080 cactcctagt aacacttccc gtgtctaaag agaccagaat cttgcgggat aagtgtactg 1140 atgattccaa actcgtagac agtggggcgg tgcatgtcct ggtagacggg aatcacgaag 1200 gcaggctcgg agaacttttc ttcgagttaa ccattgtgtt ctctgaacca accttttgca 1260 atcaccactc ccaagtcatc aaaggactca aagagagtga aggacccgaa tatgtcaaac 1320 tcgagcctaa caaggagacc gtaaaactgg ttttccaggc agcgggggcg tacttaatct 1380 ctatagtggc ctccaaacta gagcgaatcg ggcagcttgg tgcttctgaa ggtgacaagc 1440 tggtagttga gagtgctgat aagagtgcct gcctctgtag aatagaggcg gagcaacccg 1500 gtagtgctat agtattagtt tatgccagca gggaggctat taccctgcga gcttacatca 1560 acaagctatg aggaaagcca ctgcggtggg gtcagtctcc tggtgcgcca acacccagaa 1620 ggggagacaa cttcagtggt tgacaacccg acgcttagtg taagccttga agaatccaaa 1680 aacagagtgc tactgctttc agtgtgcgag ctttatttgc tcacttcctc cgtcgataaa 1740 atcccgattt ttccggtggg cttcggcgga catccttgat gaagaacggg ggggtaaccc 1800 acccccctga tctgccc 1817 //