Dbfetch
ID EU852917; SV 1; linear; genomic RNA; STD; VRL; 1817 BP. XX AC EU852917; XX DT 01-JUL-2009 (Rel. 101, Created) DT 28-JAN-2011 (Rel. 107, Last updated, Version 2) XX DE Pelargonium line pattern virus isolate SPA3 clone 2 putative movement DE protein (p7), putative movement protein (p9), and coat protein (CP) genes, DE complete cds. XX KW . XX OS Pelargonium line pattern virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Pelarspovirus. XX RN [1] RP 1-1817 RX DOI; 10.1016/j.virusres.2010.10.022. RX PUBMED; 20979982. RA Castano A., Ruiz L., Elena S.F., Hernandez C.; RT "Population differentiation and selective constraints in Pelargonium line RT pattern virus"; RL Virus Res. 155(1):274-282(2011). XX RN [2] RP 1-1817 RA Castano A., Ruiz L., Hernandez C.; RT "Sequence variability of distinct isolates of Pelargonium line pattern RT virus"; RL Unpublished. XX RN [3] RP 1-1817 RA Castano A., Ruiz L., Hernandez C.; RT ; RL Submitted (26-JUN-2008) to the INSDC. RL Instituto de Biologia Molecular y Celular de Plantas, Ingeniero Fausto Elio RL s/n, Valencia, Valencia 46022, Spain XX DR MD5; e007745dd7ada9c0629f9afbdf3ccff6. XX FH Key Location/Qualifiers FH FT source 1..1817 FT /organism="Pelargonium line pattern virus" FT /host="Pelargonium zonale" FT /lab_host="Chenopodium quinoa" FT /isolate="SPA3" FT /mol_type="genomic RNA" FT /country="Spain" FT /clone="2" FT /db_xref="taxon:167019" FT gene 208..399 FT /gene="p7" FT CDS 208..399 FT /codon_start=1 FT /gene="p7" FT /product="putative movement protein" FT /db_xref="GOA:C6F3K5" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:C6F3K5" FT /protein_id="ACJ38451.1" FT /translation="MDIQPKDTNLSVKEIGKSAKRGSTKNKLDIAHSGVSKGTSRDLVG FT ANFVTVADKVEFVVHLNF" FT gene 305..571 FT /gene="p9" FT CDS 305..571 FT /codon_start=1 FT /transl_except=(pos:305..307,aa:Met) FT /gene="p9" FT /product="putative movement protein" FT /note="non-canonical start codon" FT /db_xref="GOA:C6F3K6" FT /db_xref="UniProtKB/TrEMBL:C6F3K6" FT /protein_id="ACJ38452.1" FT /translation="MEYPRVHLVILSVLILSQLLIKWNLWSISISSYLPQPHLLHPNLL FT VCVVLCIFFSSVLSQGQSYSYSYFSTSTSDKFISVAVGNGGQG" FT gene 555..1571 FT /gene="CP" FT CDS 555..1571 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:C6F3L0" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C6F3L0" FT /protein_id="ACJ38453.1" FT /translation="MAAKDNPAVLAAVARREQWAIKLQSKGWGSLSKAQKATARSYGIG FT NPPTVVVPRTTRLVAGNPMNARRARGEPGNAKMGTTITKQEYMGELHSSSKIKTYLLDP FT KNVRSFPQLSGLAIGYNKYKITDFKVRYSPKCSDSECGLTIAYSSDSSDPPPKNKFNLF FT SMNHKYETAAHKPLVVTLPVSKETRFLREKCTDDSKLVDSGAVHVMVDGNHEGRLGELF FT FELTIVLSEPTFCNHHSQVIKGLKESEGPEYVKVEPDKETVKLVFQAAGAYLVSIVASK FT LERIGQLGASEGDKLVVDGADKSACLCRIEAEQPGSAVVLVYASREAITLRAHINKL" XX SQ Sequence 1817 BP; 482 A; 446 C; 473 G; 416 T; 0 other; gaaaatggcc ttctacgggg actactattg gaagtgggtg aaccagcata acggcaagta 60 tgaaccggtg actgaggaag ctcggcactc attccacttg gcgtttgggg tcagccctga 120 ccaacagttg gccctagagg ccatatactc tcgcaagtcg ctactttggg agtcctcccc 180 ctttacattt gaagttggcg ctatcgaatg gatattcaac caaaagatac caatctaagt 240 gtaaaggaga tagggaaatc agcaaagcgc ggaagcacaa agaacaagct agatatagct 300 cacagtggag tatccaaggg tacatctcgt gatcttgtcg gtgctaattt tgtcacagtt 360 gctgataaag tggaatttgt ggtccatctc aatttctagt tacttgccac agccacactt 420 gttgcacccg aacctacttg tctgcgtcgt gttgtgcatt ttcttcagtt cagttcttag 480 ccagggacag agttatagtt atagttactt ttcaaccagc actagtgata aattcatctc 540 agtagctgta ggtaatggcg gccaaggata atccggcagt tctcgcagcc gtggcgcggc 600 gggaacaatg ggcaatcaag ctccaatcca agggttgggg ctccctgtcc aaggcccaga 660 aagccactgc acgctcgtac ggaataggga accctccaac agtcgtggtg ccacgcacta 720 cccggctggt ggcagggaac cccatgaacg cgcggcgggc gcggggagag cccggcaatg 780 ccaagatggg caccaccata accaagcaag aatacatggg cgagcttcat tcttcttcaa 840 agattaaaac ttacttgctc gaccccaaga atgtaaggag cttccctcag ttaagcgggc 900 ttgcaatcgg ctataacaag tacaagatca ctgacttcaa ggtgcggtac agtcccaaat 960 gcagcgacag tgagtgtggg ttaaccatag cttactccag cgactcttca gacccacctc 1020 cgaagaacaa attcaacttg tttagcatga accacaagta cgaaacggcc gcgcacaagc 1080 cactcgtagt aacacttccc gtgtctaaag agaccagatt cttgcgggaa aagtgtactg 1140 atgattccaa actcgtagac agtggggcgg tgcacgtaat ggtagacggg aatcacgaag 1200 gtcggcttgg agaacttttc ttcgagttaa ccatcgtgct ttctgaacct accttttgca 1260 atcaccactc ccaagtcatt aaaggactca aggagagtga agggcccgaa tatgtcaaag 1320 ttgagcctga caaggagacc gtgaaacttg ttttccaggc agcgggggcg tacttagttt 1380 ctatagtggc ctccaaacta gagcgaatcg ggcagcttgg tgcttctgaa ggtgacaagc 1440 tggtagtgga tggtgctgat aagagcgcct gcctctgtag aatagaggcg gagcaacctg 1500 gtagtgctgt agtattagtg tatgccagca gggaggccat taccctgcga gctcatatca 1560 acaagctatg aggaaagcca ctgcggtggg gtcagtctcc tggtgcgcca acacccagaa 1620 ggggagacaa cttcagtggt tgataacccg atgcttagta tgagcctaga aaaacctaaa 1680 aacagagtgc tactgctttc agcgtgcgag ctttatttgc tcacttcctc cgtcgataaa 1740 atcccgattt ctcgggtggg cttcggcgga catccttaat gaagaacggg ggggtaaccc 1800 acccccctga tctgccc 1817 //