Dbfetch
ID EU852915; SV 1; linear; genomic RNA; STD; VRL; 1817 BP. XX AC EU852915; XX DT 01-JUL-2009 (Rel. 101, Created) DT 28-JAN-2011 (Rel. 107, Last updated, Version 2) XX DE Pelargonium line pattern virus isolate SPA1 clone 2 putative movement DE protein (p7), putative movement protein (p9), and coat protein (CP) genes, DE complete cds. XX KW . XX OS Pelargonium line pattern virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Pelarspovirus. XX RN [1] RP 1-1817 RX DOI; 10.1016/j.virusres.2010.10.022. RX PUBMED; 20979982. RA Castano A., Ruiz L., Elena S.F., Hernandez C.; RT "Population differentiation and selective constraints in Pelargonium line RT pattern virus"; RL Virus Res. 155(1):274-282(2011). XX RN [2] RP 1-1817 RA Castano A., Ruiz L., Hernandez C.; RT "Sequence variability of distinct isolates of Pelargonium line pattern RT virus"; RL Unpublished. XX RN [3] RP 1-1817 RA Castano A., Ruiz L., Hernandez C.; RT ; RL Submitted (26-JUN-2008) to the INSDC. RL Instituto de Biologia Molecular y Celular de Plantas, Ingeniero Fausto Elio RL s/n, Valencia, Valencia 46022, Spain XX DR MD5; c57782ac33469b56aab11a44c0f7f6cf. XX FH Key Location/Qualifiers FH FT source 1..1817 FT /organism="Pelargonium line pattern virus" FT /host="Pelargonium zonale" FT /lab_host="Chenopodium quinoa" FT /isolate="SPA1" FT /mol_type="genomic RNA" FT /country="Spain" FT /clone="2" FT /db_xref="taxon:167019" FT gene 208..399 FT /gene="p7" FT CDS 208..399 FT /codon_start=1 FT /gene="p7" FT /product="putative movement protein" FT /db_xref="GOA:C6F3K2" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:C6F3K2" FT /protein_id="ACJ38445.1" FT /translation="MDVQPKDTNLSVKEAGKSAKRGSTKNKLDIAHSGVSKGTSRDLVG FT ANFVTAADKVEFVVHLHF" FT gene 305..571 FT /gene="p9" FT CDS 305..571 FT /codon_start=1 FT /transl_except=(pos:305..307,aa:Met) FT /gene="p9" FT /product="putative movement protein" FT /note="non-canonical start codon" FT /db_xref="GOA:C6F3K3" FT /db_xref="UniProtKB/TrEMBL:C6F3K3" FT /protein_id="ACJ38446.1" FT /translation="MGYPRVHLAILSVLILSQLLIKWNLWYISISNFLPQPHLLHPNLL FT VCIVLCIFFSSVLSQGQSYSYSYISTSTSDKFISVAVGNGGQG" FT gene 555..1571 FT /gene="CP" FT CDS 555..1571 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:C6F3K4" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C6F3K4" FT /protein_id="ACJ38447.1" FT /translation="MAAKDNPAVLAAVARREQWAIKLQSKGWGSLSKAQKATARSYGIG FT NPPTVVVPRTTRLVAGNPMNARRARGEPGNAKMGTTITKQEYMGELHSSSRIETYLLDP FT KNVRSFPQLSGLAVGYNKYKITDFKVRYSPKCSDSECGLTIAYSSDSSDPPPKNKFNLF FT SMNHKYETAAHKPLLVTLPVSKETRFLRDKCTDDSKLVDSGAVHVLVDGNHEGRLGELF FT FELTIVFSEPTFCNHHSQVIKGLKESEGPEYVKLEPDKETVKLVFQAAGAYLISIVASK FT LERIGQLGASEGDKLVVESADKSACLCRIEAEQPGSAVVLVYASREAITLRAYINKL" XX SQ Sequence 1817 BP; 478 A; 446 C; 475 G; 418 T; 0 other; gaaaatggcc ttctacgggg actactattg gaagtgggtc aaccagcata acggcaagta 60 tgaaccggtg accgaggaag ctcgacactc attccacttg gcgtttgggg ttagccctga 120 ccaacagttg gccttagagg ctatatacgc tcacaagtcg ctactttggg agtcctcccc 180 ctttacattt gaagttggcg ctatcgaatg gatgttcaac caaaagatac caatctgagt 240 gtaaaggaag cagggaaatc agcaaagcgc ggaagtacaa agaacaagct agacatagcg 300 cacagtgggg tatccaaggg tacatctcgc gatcttgtcg gtgctaattt tgtcacagct 360 gctgataaag tggaatttgt ggtacatctc catttctaat ttcttaccac agccacactt 420 gttgcaccct aatctgcttg tctgcattgt gttgtgcatc ttcttcagtt cagttcttag 480 ccagggacag agttatagtt atagttacat ttcaactagc accagtgata aattcatctc 540 agtagctgta ggaaatggcg gccaaggata atccggcggt cctcgcagcc gtggcgaggc 600 gggaacaatg ggcaatcaag ctccaatcca agggttgggg ctctctgtca aaggcccaga 660 aagccaccgc tcgctcgtac gggataggga atcctccgac agtcgtggtg cctcgcacta 720 cccggctggt ggctggaaac cccatgaacg cgcggcgggc gcggggagag cctggtaatg 780 ccaaaatggg caccaccata accaagcaag aatacatggg cgagcttcat tcttcttcaa 840 ggattgaaac ttacttgctc gaccccaaga atgtgaggag cttccctcag ttaagcgggc 900 ttgcagtcgg ctacaacaag tacaagatta ctgacttcaa ggtgcggtac agccctaaat 960 gtagcgacag tgagtgtggg ttaaccatag cttactccag cgactcttca gacccaccgc 1020 cgaagaacaa attcaacttg tttagcatga accacaagta cgaaacagcc gcgcacaagc 1080 cactcctagt aacacttccc gtgtccaaag agaccagatt cttgcgggat aagtgtactg 1140 atgattccaa gctcgtagac agtggggcgg tgcatgtcct ggtggacggg aatcacgagg 1200 gcaggctcgg agagcttttc ttcgagttga ccatcgtgtt ttctgaacca accttttgca 1260 atcaccactc ccaagtcatc aagggactca aagagagtga aggacccgaa tatgttaaac 1320 ttgagcctga caaggaaacc gtgaaactgg ttttccaggc agcgggggcg tacttaattt 1380 ctatagtagc ctccaagcta gagcgaatcg ggcagcttgg tgcttctgaa ggtgacaagc 1440 tggtagttga aagtgctgat aagagtgcct gcctctgtag aatagaggcg gagcaacccg 1500 gtagtgctgt agtattagtt tatgccagca gggaggccat taccctgcga gcttacatca 1560 acaagctatg aggaaagcca ctgcggtggg gtcagtctcc tggtgcgcca acacccagaa 1620 ggggagacaa cttcagtggt tgataacccg atgcttagcg taagcctaga aaaacccaaa 1680 aacagagtgt tactgctttc agcgtgcgag ctttatttgc tcacttcctc cgtcgataaa 1740 atcccgattt ttcgggtggg cttcggcgga catccttaat gaagaacggg ggggtaaccc 1800 acccccctga tctgccc 1817 //