ID EU849616; SV 1; linear; genomic RNA; STD; VRL; 3883 BP. XX AC EU849616; XX DT 01-JUL-2009 (Rel. 101, Created) DT 15-MAY-2014 (Rel. 120, Last updated, Version 5) XX DE Pelargonium line pattern virus isolate SPA4 from Spain, complete genome. XX KW . XX OS Pelargonium line pattern virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Pelarspovirus. XX RN [1] RP 1-3883 RX DOI; 10.1016/j.virusres.2010.10.022. RX PUBMED; 20979982. RA Castano A., Ruiz L., Elena S.F., Hernandez C.; RT "Population differentiation and selective constraints in Pelargonium line RT pattern virus"; RL Virus Res. 155(1):274-282(2011). XX RN [2] RP 1-3883 RA Castano A., Ruiz L., Hernandez C.; RT ; RL Submitted (24-JUN-2008) to the INSDC. RL Instituto de Biologia Molecular y Celular de plantas, CSIC-UPV, Valencia, RL Spain XX DR MD5; c75951d729a655f5801779796858c244. XX FH Key Location/Qualifiers FH FT source 1..3883 FT /organism="Pelargonium line pattern virus" FT /host="Pelargonium zonale" FT /lab_host="Chenopodium quinoa" FT /isolate="SPA4" FT /mol_type="genomic RNA" FT /country="Spain" FT /db_xref="taxon:167019" FT 5'UTR 1..6 FT gene 7..2304 FT /gene="p87" FT CDS 7..2304 FT /codon_start=1 FT /transl_except=(pos:727..729,aa:OTHER) FT /gene="p87" FT /product="p87" FT /note="RNA-dependent RNA polymerase; p87 is a readthrough FT protein of p27" FT /db_xref="GOA:C6F396" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:C6F396" FT /protein_id="ACJ24784.1" FT /translation="MAHYFGEALQLGLFAAKASCWASKELALLGPNLAWIATRPLRNDA FT NAILERIGVHGLAKIPCNFDSDELTIANDCIVKSDRNLEDESIVVEEIEEGEEKKKSKK FT VTRRRVKTKPTFAAVLAADAKNYYGCLPSATRANELSVMKYLVSKCQEHKLTITQTREV FT SAMAFALTFTPDENDKLIYKYLNSTEVFERRVDYAKARGVDKCWFELLKRPWHARAWRR FT VVGRIFGMPEQQAFEFVKXGCLMDTCGVDTKVYRGEHHWVKEFRGAANPKPRRLYKISG FT VSPEVRWGVHNNSFVNLRRGLMERVFYVERCGKLLPCPSPEAGLFKRLFNKVGRRVIRF FT CGHHSPIPRASYPGMFQGRKRTIYENAVRSLVDRPYNIRDSYLKTFVKFEKLDFSKKPD FT PAPRVIQPRHPRYNVELGRYLKPFEHFCYKALDKLWGGPTVMKGYTVEEMGGIIKDCWL FT QFQKPVAIGFDMSRFDQHVSVDALKFEHSIYKACFSKDGNLATLLGHQISNRGSAYAND FT GYLRYRVEGKRMSGDVNTGLGNCLLACTITKFLMEEIGVRSRLVNNGDDCVLICESGDC FT RAVEDSLTVGWRRFGFTCIAEKPVYELEKIEFCQMSPIQMSDSRVKLVRKPQKSISKDA FT HSTTPLTTIQLAQEWTRAIGEGGLSLTSGIPVVQEFYQCLIRNGKKATKESKKMAFYGD FT YYWKWVNQHNGKYEPVTEEARHSFHLAFGVSPDQQLALEAIYSRKSLLWESSPFTFEVG FT AIEWIFNQKIPI" FT gene 7..729 FT /gene="p27" FT CDS 7..729 FT /codon_start=1 FT /gene="p27" FT /product="p27" FT /note="replicase" FT /db_xref="UniProtKB/TrEMBL:C6F397" FT /protein_id="ACJ24785.1" FT /translation="MAHYFGEALQLGLFAAKASCWASKELALLGPNLAWIATRPLRNDA FT NAILERIGVHGLAKIPCNFDSDELTIANDCIVKSDRNLEDESIVVEEIEEGEEKKKSKK FT VTRRRVKTKPTFAAVLAADAKNYYGCLPSATRANELSVMKYLVSKCQEHKLTITQTREV FT SAMAFALTFTPDENDKLIYKYLNSTEVFERRVDYAKARGVDKCWFELLKRPWHARAWRR FT VVGRIFGMPEQQAFEFVK" FT gene 2274..2465 FT /gene="p7" FT CDS 2274..2465 FT /codon_start=1 FT /gene="p7" FT /product="p7" FT /note="movement protein" FT /db_xref="GOA:C6F399" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:C6F399" FT /protein_id="ACJ24786.1" FT /translation="MDIQSKDTNLSVKEPGKSAKRGSTKNKLDIAHSGVSKGTSRDLVG FT ANFVTVADKVEFVVHLHF" FT gene 2371..2637 FT /gene="p9.7" FT CDS 2371..2637 FT /codon_start=1 FT /transl_except=(pos:2371..2373,aa:Met) FT /gene="p9.7" FT /product="p9.7" FT /note="movement protein; non-canonical start codon" FT /db_xref="GOA:C6F3A0" FT /db_xref="UniProtKB/TrEMBL:C6F3A0" FT /protein_id="ACJ24787.1" FT /translation="MEYPRVHLAILSVLILSQLLIKWNLWSISISSCLPQPHLLHPNLL FT VCIVLCIFFCSVLSQGQSYSYSYFSTSTSDKFISVAVGNGGQG" FT gene 2621..3637 FT /gene="p37" FT CDS 2621..3637 FT /codon_start=1 FT /gene="p37" FT /product="p37" FT /note="coat protein" FT /db_xref="GOA:C6F3A1" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C6F3A1" FT /protein_id="ACJ24788.1" FT /translation="MAAKDNPAVLAAVARREQWAIKLQSKGWGSLSKAQKATARSYGIG FT NPPTVVVPRTTRLVAGNPMNARRARGEPGNAKMGTTITKQEYMGELHSSSKIETYLLDP FT KNVRSFPQLSGLAIGYNKYKITDFKVRYSPKCSDSECGLTIAYSSDSSDPPPKNKFNLF FT SMNNKYETAAHKPLLVTLPVSKETRILRDKCTDDSKLVDSGAVHVLVDGNHEGRLGELF FT FELTIVFSEPTFCNHHSQVIKGLKESEGPEYVKLEPNKETVRLVFQAAGAYLISIVASK FT LEQIGQLGASEGDKLVVESADKSACLCRIEAEQPGSAIVLVYASREAITLRAYINKL" XX SQ Sequence 3883 BP; 1046 A; 900 C; 1055 G; 882 T; 0 other; aacaaaatgg cacactattt tggggaggca ctgcaattgg gtttgttcgc tgctaaggcc 60 agttgctggg ccagcaagga gttggcgctc cttggcccta acctcgcctg gatagcaacc 120 agaccacttc gcaatgatgc taatgccatt ctagagagga ttggcgtcca cgggttggcc 180 aaaatcccgt gcaacttcga ctccgatgag ttgacgatcg caaatgactg cattgtgaag 240 tccgacagga acttggagga tgaatcgatt gtggtggagg agatcgaaga gggggaggag 300 aaaaagaaga gcaagaaggt gacaaggaga agggtgaaga ccaagcctac cttcgcggcc 360 gtcttggcgg ccgatgcgaa gaattattac ggttgcctcc caagtgccac cagggcaaac 420 gagctcagcg tcatgaagta cttagtctcg aagtgtcaag agcataaact aaccataact 480 cagacacgtg aggtaagtgc catggctttt gcgttgacct tcacgccaga tgaaaacgac 540 aaactcatct acaaatacct caattcaacc gaggtgtttg aacgacgagt ggattatgct 600 aaggcgcgag gggttgacaa gtgctggttc gaactgctca agaggccttg gcacgctcga 660 gcatggagga gggtggtagg gcggattttc gggatgcctg agcagcaggc tttcgagttc 720 gtcaaatagg gatgcctcat ggacacttgt ggtgtggaca cgaaagtgta ccgcggggaa 780 caccactggg ttaaggagtt ccgtggggcg gcaaacccca agccgcgtag gttgtataag 840 attagtggcg tatcccctga agttagatgg ggggtgcaca acaatagttt tgtcaacctc 900 agaagagggt taatggaaag ggttttctac gtcgaaagat gcgggaagct cctaccgtgt 960 ccgtctccgg aggcaggttt gttcaaacgg ttgttcaaca aggttggacg gcgggtgatt 1020 aggttttgcg gccatcattc cccgatcccc agggcttcat accctgggat gtttcagggc 1080 aggaagcgca cgatttatga gaacgcagtc cggtcccttg ttgaccgacc atataatatt 1140 agagatagct atttaaagac ttttgttaag tttgaaaagt tagactttag caagaaacct 1200 gatcccgcgc ctagggtcat ccaacccagg catccgaggt acaacgtaga actcggaaga 1260 tatttgaagc cttttgagca cttttgctac aaggcactag acaagttgtg gggagggccc 1320 accgttatga aaggatacac agttgaggaa atgggaggga ttatcaagga ctgttggctt 1380 caattccaga aaccagtggc tattgggttc gacatgagtc gattcgatca acatgtttct 1440 gtggatgccc tgaagtttga gcacagcatt tacaaggcct gcttctcgaa agatggaaat 1500 ctggcaactt tgcttggtca ccagatatct aatagaggct cagcctatgc caatgatggc 1560 tacttgagat acagagtgga agggaaaagg atgagcgggg acgtgaacac aggactgggc 1620 aattgcttgt tggcgtgcac catcaccaaa tttttgatgg aagaaattgg cgtgaggtct 1680 agactggtaa acaacgggga cgactgcgtg cttatatgtg agtctggaga ttgccgcgct 1740 gtcgaggata gcttgacagt ggggtggcga cgatttggct tcacctgcat tgcggaaaaa 1800 cccgtctacg agctggaaaa gatcgagttt tgtcaaatga gccctataca gatgagtgat 1860 tctcgcgtca aactagtgag gaaaccccag aaaagcatat ccaaagatgc acattccacc 1920 accccactca ccaccataca gctagctcaa gaatggaccc gcgccattgg agaaggcggg 1980 ttatctctga ccagcggcat cccagtagtc caggaattct accaatgcct catccgtaac 2040 ggaaagaaag cgaccaagga atcaaagaaa atggccttct acggggacta ctattggaag 2100 tgggtcaacc agcataacgg caagtatgaa ccggtgactg aggaagctcg gcactcattc 2160 cacttggcgt ttggggttag ccctgaccaa cagttggcct tggaggctat atactctcgc 2220 aagtcgctac tttgggagtc ctcccccttt acatttgaag ttggcgctat cgaatggata 2280 ttcaatcaaa agataccaat ctaagtgtaa aggagccagg gaaatcagca aagcgcggaa 2340 gcacaaagaa caagctagac atagcgcaca gtggagtatc caagggtaca tctcgcgatc 2400 ttgtcggtgc taattttgtc acagttgctg ataaagtgga atttgtggtc catctccatt 2460 tctagttgct taccacagcc acatttgttg caccccaacc tacttgtctg cattgtgttg 2520 tgcatcttct tttgttcagt tcttagccag ggacagagtt atagttatag ttacttttct 2580 accagcacca gtgataaatt catctcagta gctgtaggaa atggcggcca aggataatcc 2640 ggcagtcctc gcagccgtgg cgaggcggga acaatgggca atcaagcttc aatccaaggg 2700 ttggggctcc ctgtctaagg cccagaaagc cactgcacgc tcgtacggaa tagggaatcc 2760 cccgacagtc gtggtgccac gcaccacccg gctggtggct gggaacccca tgaacgcgcg 2820 gcgggcgcgg ggagagcctg gcaatgccaa aatgggcacc accataacca agcaggaata 2880 catgggcgag cttcattctt cttcaaagat tgaaacatac ttgctcgacc ccaaaaatgt 2940 gaggagcttc cctcagttaa gcgggcttgc aatcggctac aacaagtaca agattactga 3000 cttcaaggtg cggtacagtc ccaaatgtag cgacagtgag tgtgggttaa ccatagctta 3060 ctccagcgac tcttcagacc caccgccgaa gaacaaattc aacttgttta gcatgaacaa 3120 caagtacgaa acagccgcgc acaagccact cctagtaaca cttcccgtgt ctaaagagac 3180 cagaatcttg cgggataagt gtactgatga ttccaaactc gtagacagtg gggcggtgca 3240 tgtcctggta gacgggaatc acgaaggcag gctcggagaa cttttcttcg agttaaccat 3300 tgtgttctct gaaccaacct tttgcaatca ccactcccaa gtcatcaaag gactcaaaga 3360 gagtgaagga cccgaatatg tcaaactcga gcctaacaag gagaccgtga gactggtttt 3420 ccaggcagcg ggggcgtact taatctctat agtggcctcc aaactagagc aaatcgggca 3480 gcttggtgct tctgaaggtg acaagctggt agttgagagt gctgataaga gtgcctgcct 3540 ctgtagaata gaggcggagc aacccggtag tgctatagta ttagtttatg ccagcaggga 3600 ggctattacc ctgcgagctt acatcaacaa gctatgagga aagccactgc ggtggggtca 3660 gtctcctggt gcgccaacac ccagaagggg agacaacttc agtggttgat aacccgacgc 3720 ttagtgtaag ccttgaaaaa tccaaaaaca gagtgctact gctttcagtg tgcgagcttt 3780 atttgctcac ttcctccgtc gataaaatcc cgatttttcg ggtgggcttc ggcggacatc 3840 cttgatgaag aacggggggg taacccaccc ccctgatctg ccc 3883 //