ID EU839578; SV 2; circular; genomic DNA; STD; VRL; 2783 BP. XX AC EU839578; XX DT 18-JUN-2009 (Rel. 101, Created) DT 18-JUN-2009 (Rel. 101, Last updated, Version 1) XX DE Ipomoea yellow vein virus isolate ES:MAL:IG5:06, complete genome. XX KW . XX OS Ipomoea yellow vein virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-2783 RX DOI; 10.1099/vir.0.012542-0. RX PUBMED; 19515824. RA Lozano G., Trenado H.P., Valverde R.A., Navas-Castillo J.; RT "Novel begomovirus species of recombinant nature in sweet potato (Ipomoea RT batatas) and Ipomoea indica: taxonomic and phylogenetic implications"; RL J. Gen. Virol. 90(Pt 10):2550-2562(2009). XX RN [2] RP 1-2783 RA Trenado H.P., Lozano G., Navas-Castillo J.; RT ; RL Submitted (20-JUN-2008) to the INSDC. RL Virology, CSIC, Mayora Algarrobo-Costa, Algarrobo-Costa, Malaga 29760, RL Spain XX RN [3] RC Sequence update by submitter RP 1-2783 RA Trenado H.P., Lozano G., Navas-Castillo J.; RT ; RL Submitted (16-JUN-2009) to the INSDC. RL Virology, CSIC, Mayora Algarrobo-Costa, Algarrobo-Costa, Malaga 29760, RL Spain XX DR MD5; ca0463b7f5caa50640148001a9c73841. XX CC On Jun 17, 2009 this sequence version replaced gi:213958842. XX FH Key Location/Qualifiers FH FT source 1..2783 FT /organism="Ipomoea yellow vein virus" FT /host="Ipomoea indica" FT /isolate="ES:MAL:IG5:06" FT /mol_type="genomic DNA" FT /country="Spain" FT /collection_date="Jun-2006" FT /clone="IG5" FT /db_xref="taxon:653358" FT gene 42..440 FT /gene="V2" FT CDS 42..440 FT /codon_start=1 FT /gene="V2" FT /product="MP" FT /db_xref="GOA:C5H6N6" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:C5H6N6" FT /protein_id="ACJ54751.1" FT /translation="MMALLYKDQSGCRAWRPSMAEMWDPLQNPLPDTLYGFRCMLSVKY FT LQGILKKYEPGTLGFELCSELIRIFRVRQYDRANARFAEISSLWGETGKTEAELRDSYR FT ALHWECCPNCCPKLCPDFKKRPDEEKEG" FT gene 265..1029 FT /gene="CP" FT CDS 265..1029 FT /codon_start=1 FT /gene="CP" FT /product="V2" FT /db_xref="GOA:C5H6P9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:C5H6P9" FT /protein_id="ACJ54752.1" FT /translation="MTGRMRVSPRFHPYGGRQVRRRLNFETAIVPYTGNAVPIAARSYV FT PISRSVQMKRRKGDRIPKGCVGPCKVQDYEFKMDVPHSGTFVCVSDFTRGTGLTHRLGK FT RVCIKSMGIDGKVWMDDNVAKRDHTNIITWWLIRDRRPNKDPLTFSQAFTMYDNEPTTA FT KIRMDLRDRMQVLKKFAVTVSGGPYNHKEQALVRKFFKNLYNHVTYNHKEEAKYENHLE FT NALMLYSASSHASNPVYQTLRCRAYFYDSHKN" FT gene complement(1026..1463) FT /gene="C3" FT CDS complement(1026..1463) FT /codon_start=1 FT /gene="C3" FT /product="REn" FT /db_xref="GOA:C5H6Q0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C5H6Q0" FT /protein_id="ACJ54755.1" FT /translation="MDSRTGESLSHAQITRAAEFFNNPMSVGQTAPFHLRLMYVHTNNL FT DSKTIMKVQLQVNHRNRREIGFQKIFLQFRIITTRLIGAIPNWTGISNRLKWRICNSLA FT SLGYFSLINLVYVIRHLPQQCLWVEEVDVIDCKDDIKVLLY" FT gene complement(1177..1626) FT /gene="C2" FT CDS complement(1177..1626) FT /codon_start=1 FT /gene="C2" FT /product="TrAp" FT /db_xref="GOA:C5H6Q1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C5H6Q1" FT /protein_id="ACJ54754.1" FT /translation="MSTVPSGYKRKCPTQEPIHAAAKKRQRKTPEPRTRIVWKGCGCSA FT FITNDCKFQHGFTHRGVTKSCTDYESSRILQQSHVCGSDCTIPSTTDVCPYEQPRLKDD FT HESAASSQPPEQEGNWIPEDLPPIPDHNNASDWCYSQLDWYFQSP" FT gene complement(1535..2629) FT /gene="C1" FT CDS complement(1535..2629) FT /codon_start=1 FT /gene="C1" FT /product="Rep" FT /db_xref="GOA:C5H6Q2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C5H6Q2" FT /protein_id="ACJ54753.1" FT /translation="MAPPKRFRISSKNYFITYPRCSLSKEDCLSQILNIQTPTNKKYIH FT IAKELHEDGEPHLHVLVQFEGKFVCTNSRFFDLVSPTRSNHFHPNIQGAKSSSDVKSYV FT DKDGDTLTWGEFQVDGRSARGGQQTANDAAAEALNAGNKDAALQIIREKLPEKFIFQYH FT NLVSNLDRIFSPPPSVYSSPFSISSFNNVPDIISDWAAENVMDAAARPDRPISIVIEGP FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW FT QSNCKYGKPVQLKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKNWATANAVFCDVDSPF FT WIQEEVSHSGTNTRGGQEAPEENS" FT gene complement(2215..2472) FT /gene="C4" FT CDS complement(2215..2472) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C5H6Q3" FT /protein_id="ACJ54756.1" FT /translation="MGNLTSMCWCSSKVNSSAQIADSSTLYHPQGRITFTPTSRELNPR FT PMSSPTSIRTGIHSHGVNSRSTADLLEEASRLLTTQQQKH" XX SQ Sequence 2783 BP; 726 A; 567 C; 668 G; 822 T; 0 other; accggtgccc gccgcgctcc cttttgtggg tcccacgaat aatgatggca ttgctttata 60 aggaccaatc aggttgccgt gcttggcgcc caagtatggc tgaaatgtgg gatcctcttc 120 agaacccact accagatact ttatacggtt tcaggtgtat gctttccgtt aaatacctac 180 aaggtatttt gaagaaatac gagccaggaa ccctagggtt cgagctctgt tcggagttaa 240 tccgtatatt cagggtcagg cagtatgacc gggcgaatgc gcgtttcgcc gagatttcat 300 ccctatgggg ggagacaggt aagacggagg ctgaacttcg agacagctat cgtgccttac 360 actgggaatg ctgtcccaat tgctgcccga agctatgtcc cgatttcaag aagcgtccag 420 atgaagagaa ggaagggtga tcgcattccg aagggatgcg tgggtccttg taaggtacag 480 gattacgaat tcaagatgga tgtcccacat agtgggacct ttgtttgtgt ttctgatttt 540 actagaggta ctgggcttac ccatcgtttg ggtaagaggg tgtgtattaa gtccatgggt 600 attgatggta aggtttggat ggatgacaac gtcgccaaga gggaccacac caacatcatt 660 acttggtggt tgatccgaga taggaggccc aataaggatc cattgacgtt ttcacaggcg 720 tttacaatgt atgataacga gcccactact gctaagatcc gaatggatct gagagataga 780 atgcaggtgt tgaagaaatt tgctgttact gtttccggtg gtccttataa ccacaaagag 840 caggctttgg ttcggaagtt ttttaagaat ttgtataatc atgttactta taatcataag 900 gaggaggcta agtatgagaa tcatttagag aatgcattaa tgttgtattc tgctagcagt 960 catgctagca atcctgtgta tcagacactg cgttgcaggg cttattttta tgattcgcac 1020 aaaaattaat aaagaagtac ttttatatca tctttgcaat ctattacatc gacttcttct 1080 acccacaagc attgttgtgg taaatgtcta attacataaa ctaaattaat caatgaaaaa 1140 taacctaaac tagctaaact attacaaatt cgccatttaa ggcgattgga aataccagtc 1200 caattgggaa tagcaccaat cagacgcgtt gttatgatcc ggaattggag gaagatcttc 1260 tggaatccaa tttccctcct gttccggtgg ttgacttgaa gctgcacttt catgatcgtc 1320 tttgagtcta ggttgttcgt atggacatac atcagtcgta gatggaatgg tgcagtctga 1380 cccacagaca tgggattgtt gaagaattct gctgctctcg taatctgtgc atgacttagt 1440 gactccccgg tgcgtgaatc catgctggaa cttgcagtcg ttggtgatga aggctgaaca 1500 gccgcagccc ttccacacta tccttgtcct tggctcagga gttttcctct ggcgcttctt 1560 ggccgccgcg tgtattggtt cctgagtggg acacttcctc ttgtatccag aagggactgt 1620 cgacatcaca gaaaactgcg tttgctgttg cccagttctt gagtgctcct tgctctggct 1680 tgtccagcca gagtttaaat gaagagcctt ctcctggatt gcagaggaag atagtgggaa 1740 ttccaccttt aagttgaact ggctttccgt atttacaatt gctttgccag tccttctggg 1800 cccccatgaa ctctttaaag tgctttaggt attgggggtt gacgtcatca atgacgttat 1860 accaagcact gttgctatac acctttggac tcaggtccaa atgcccacac agataattat 1920 gtgggcctaa ggatctagcc caaactgttt tacctattct acttgggcct tctataacta 1980 tacttatggg cctatctggc cgcgcagcgg catccatgac attctcagca gcccaatcac 2040 tgataatgtc aggaacatta ttgaaagaag aaatggaaaa aggtgaagaa taaacagaag 2100 gaggaggaga aaatatccta tctaaattgc taactaaatt atggtattga aatataaatt 2160 tttcagggag tttctccctg attatttgta aagcagcgtc cttatttcct gcatttaatg 2220 cttctgctgc tgcgtcgtta gcagtctgct ggcctcctct agcagatctg ccgtcgacct 2280 ggaattcacc ccatgtgagt gtatccccgt ccttatcgac gtaggacttg acatcggacg 2340 aggatttagc tccctggatg ttggggtgaa agtgattcga ccttgtgggt gatacaaggt 2400 cgaagaatct gctatttgtg cagacgaatt taccttcgaa ctgcaccagc acatggaggt 2460 gaggttcccc atcctcgtga agctctttgg cgatgtgtat gtattttttg ttggttgggg 2520 tttggatatt taggatttgg gagaggcagt cctctttaga taaagaacag cgtggataag 2580 taataaaata attttttgaa gaaatgcgaa aacgtttggg cggagccatt tggtgacact 2640 cagactttca aatgaattgg tgactggtga caatttatac tatgtcacca aatggcattt 2700 tggtaattta gaagatcctt ttaactttaa ttcaaattcc gacaattctg ggaccaccaa 2760 aaggcgggca ccgtattaat att 2783 //