ID EU839577; SV 2; circular; genomic DNA; STD; VRL; 2783 BP. XX AC EU839577; XX DT 18-JUN-2009 (Rel. 101, Created) DT 18-JUN-2009 (Rel. 101, Last updated, Version 1) XX DE Ipomoea yellow vein virus isolate ES:MAL:IG3:06, complete genome. XX KW . XX OS Ipomoea yellow vein virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-2783 RX DOI; 10.1099/vir.0.012542-0. RX PUBMED; 19515824. RA Lozano G., Trenado H.P., Valverde R.A., Navas-Castillo J.; RT "Novel begomovirus species of recombinant nature in sweet potato (Ipomoea RT batatas) and Ipomoea indica: taxonomic and phylogenetic implications"; RL J. Gen. Virol. 90(Pt 10):2550-2562(2009). XX RN [2] RP 1-2783 RA Trenado H.P., Lozano G., Navas-Castillo J.; RT ; RL Submitted (20-JUN-2008) to the INSDC. RL Virology, CSIC, Mayora Algarrobo-Costa, Algarrobo-Costa, Malaga 29760, RL Spain XX RN [3] RC Sequence update by submitter RP 1-2783 RA Trenado H.P., Lozano G., Navas-Castillo J.; RT ; RL Submitted (16-JUN-2009) to the INSDC. RL Virology, CSIC, Mayora Algarrobo-Costa, Algarrobo-Costa, Malaga 29760, RL Spain XX DR MD5; 2d4b7e4bea6fc3351ad6d2f8792cb30a. XX CC On Jun 17, 2009 this sequence version replaced gi:213958835. XX FH Key Location/Qualifiers FH FT source 1..2783 FT /organism="Ipomoea yellow vein virus" FT /host="Ipomoea indica" FT /isolate="ES:MAL:IG3:06" FT /mol_type="genomic DNA" FT /country="Spain" FT /collection_date="Jun-2006" FT /clone="IG3" FT /db_xref="taxon:653358" FT gene 42..440 FT /gene="V2" FT CDS 42..440 FT /codon_start=1 FT /gene="V2" FT /product="MP" FT /db_xref="GOA:C5H6P2" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:C5H6P2" FT /protein_id="ACJ54745.1" FT /translation="MMALLYKDQSGCRAWRPSMAEMWDPLQNPLPDTLYGFRCMLSVKY FT LQGILKKYEPGTLGFELCSELIRIFRVRQYDRANARFAEISSLWGETGKTEAELRDSYR FT ALHWECCPNCCPKLCPGFKRRPDEEKEG" FT gene 265..1029 FT /gene="CP" FT CDS 265..1029 FT /codon_start=1 FT /gene="CP" FT /product="V1" FT /db_xref="GOA:C5H6P3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C5H6P3" FT /protein_id="ACJ54746.1" FT /translation="MTGRMRVSPRFHPYGGRQVRRRLNFETAIVPYTGNAVPIAARSYV FT PVSRGVRMKRRRGDRIPKGCVGPCKIQDYEFKMDVPHTGTFVCVSDFIRGTGLTHRLGK FT RVCIKSMSIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLNFGQIFTMYDNEPTTA FT KIRMDLRDRMQVLKKFSVTVSGGPYSHKEQALIRKFFKCLYNHVTYNHKEEAKYENQLE FT NALMLYSASSHASNPVYQTLRCRAYFYDSHTN" FT gene complement(1026..1463) FT /gene="C3" FT CDS complement(1026..1463) FT /codon_start=1 FT /gene="C3" FT /product="REn" FT /db_xref="GOA:C5H6P4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C5H6P4" FT /protein_id="ACJ54749.1" FT /translation="MDSRTGESLSHAQITRAAEFFNNPMSVGQTAPFHLRLMYVHTNNL FT DSKTIMKVQLQVNHRNRREIGFQKIFLQFRIITTRLIGAIPNWTGISNRLKWRICNSLA FT SLGYFSLFNLVYVIRHLPQQCLWVEEVDVIDCKDDIKVLLY" FT gene complement(1177..1626) FT /gene="C2" FT CDS complement(1177..1626) FT /codon_start=1 FT /gene="C2" FT /product="TrAp" FT /db_xref="UniProtKB/TrEMBL:C5H6P5" FT /protein_id="ACJ54748.1" FT /translation="MSTAPSGYKRKCPAQEPIHAEAKKRQRKTPEPRTRIVWKGCGCSA FT FITNACKFQHGFTHRGVTKSCTDYESSRILQQPHVCGSDCTIPSTTDVCPYEQPRLKDD FT HESAASSQPPEQEGNWIPEDLPPIPDHNNASDWCYSQLDWYFQSP" FT gene complement(1535..2629) FT /gene="C1" FT CDS complement(1535..2629) FT /codon_start=1 FT /gene="C1" FT /product="Rep" FT /db_xref="GOA:C5H6P6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C5H6P6" FT /protein_id="ACJ54747.1" FT /translation="MAPPTRFRISSKNYFITYPRCSLSKEDCLSQLLNIQTPTNKKYIH FT IAKELHEDGEPHLHVLVQFEGKFVCTNSRFFDLVSPTRSNHFHPNIQGAKSSSDVKSYV FT DKDGDTLTWGEFQIDGRSARGGQQTANDAAAEALNAGSKEAALQIIREKLPEKFIFQYH FT NLVSNLDRIFSPPPSVYSSPFSISSFNNVPDIISDWAAENVMDAAARPDRPISIVIEGP FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQEALKNWAVKNAVFCNVDSPF FT WIQEEVSRSGTNTRGGQEETEENS" FT gene complement(2215..2472) FT /gene="C4" FT CDS complement(2215..2472) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C5H6P7" FT /protein_id="ACJ54750.1" FT /translation="MGNLTSMCWCSSKVNSSAQIADSSTLYHPQGRITFTPTSRELNPR FT PMSSPTLIRTGIPSHGVNSRSTADLLEEVSRLLTTQQQKH" XX SQ Sequence 2783 BP; 728 A; 582 C; 662 G; 811 T; 0 other; accggtgccc gccgcgcccc cttttgtggg tcccacgagt aatgatggca ttgctttata 60 aggaccaatc aggttgccgt gcttggcgcc caagtatggc tgaaatgtgg gatcctcttc 120 agaacccact accagatact ttatacggtt tcaggtgtat gctttccgtt aaatacctac 180 aaggtatttt gaagaaatac gagccaggaa ccctagggtt cgagctctgt tcggagttaa 240 tccgtatatt cagggtcagg cagtatgacc gggcgaatgc gcgtttcgcc gagatttcat 300 ccctatgggg ggagacaggt aagacggagg ctgaacttcg agacagctat cgtgccttac 360 actgggaatg ctgtcccaat tgctgcccga agctatgtcc cggtttcaag aggcgtccgg 420 atgaagagaa ggaggggtga ccgcatccct aagggatgtg ttggtccctg taagatccag 480 gactatgagt tcaagatgga cgttccccac acgggaacgt ttgtctgtgt ctcggatttt 540 ataaggggta ctgggcttac ccatcgcctg ggtaagcgtg tttgtattaa gtccatgagt 600 atagatggga aggtatggat ggatgacaat gtggccaaga gagatcacac caatatcatc 660 acgtattggt tgattcgtga tagaaggccc aataaggatc cgctgaactt tggccagatc 720 ttcactatgt acgacaacga gcccactact gctaagatcc gaatggatct gagggataga 780 atgcaagtct tgaagaagtt ctctgttaca gtttcaggcg gtccatacag ccacaaggaa 840 caggcattaa ttaggaagtt ttttaagtgt ttgtataatc atgttactta taaccataag 900 gaagaagcta agtatgagaa tcagttagag aatgctttga tgttgtattc tgctagcagt 960 catgctagca atcctgtgta tcagacactg cgttgcaggg cttattttta tgattctcac 1020 acaaattaat aaagaagtac ttttatatca tctttgcaat ctattacatc tacttcttct 1080 acccacaagc attgttgtgg taaatgtcta attacataga ctaaattaaa caatgaaaaa 1140 taacctaaac tagctaaact attacaaatt cgccatttaa ggcgattgga aataccagtc 1200 caattgggaa tagcaccaat cagacgcgtt gttatgatcc ggaattggag gaagatcttc 1260 tggaatccaa tttccctcct gttccggtgg ttgacttgaa gctgcacttt catgatcgtc 1320 tttgagtcta ggttgttcgt atggacatac atcagtcgta gatggaatgg tgcagtctga 1380 cccacagaca tggggttgtt gaagaattct gctgctctcg taatctgtgc atgacttagt 1440 gactccccgg tgcgtgaatc catgctggaa cttgcaggcg ttggtgatga aggctgaaca 1500 accgcagccc ttccacacta tccttgtcct tggctcagga gttttcctct gtctcttctt 1560 ggcctccgcg tgtattggtt cctgagcggg acacttcctc ttgtatccag aaggggctgt 1620 cgacattaca gaaaactgcg ttttttacag cccagttctt gagtgcttct tgctctggct 1680 tgtccagcca gagtttaaat gaagaccctt ctcctggatt gcagaggaag atagtgggaa 1740 ttccaccttt aatttgaact ggctttccgt atttacaatt gctttgccag tccttctggg 1800 cccccatgaa ctctttaaag tgctttaggt attgggggtt gacgtcatca atgacgttat 1860 accaagcact gttgctatac acctttggac tcaggtccaa atgcccacac agataattat 1920 gtgggcctaa ggatctagcc caaactgttt tacctattct acttgggcct tctataacta 1980 tacttatggg cctatctggc cgcgcagcgg catccatgac attctcagca gcccaatcac 2040 tgataatgtc aggaacatta ttgaaagaag aaatggaaaa aggtgaagaa taaacagaag 2100 gaggaggaga aaatatccta tctaaattgc taactaaatt atgatattga aatataaatt 2160 tttcagggag tttctccctg ataatttgta aagcagcctc cttacttcct gcatttaatg 2220 cttctgctgc tgcgtcgtta gcagtctgct gacctcctct agcagatctg ccgtcgatct 2280 ggaattcacc ccatgtgagg gtatccccgt ccttatcaac gtaggacttg acatcggacg 2340 aggatttagc tccctggatg ttggggtgaa agtgattcga ccttgtgggt gatacaaggt 2400 cgaagaatct gctatttgtg cagacgaatt taccttcgaa ctgcaccagc acatggaggt 2460 gaggttcccc atcctcgtgc agttctttgg cgatgtgtat gtattttttg ttggttgggg 2520 tttggatatt taggagttgg gagaggcagt cctctttaga taaagaacag cgtggataag 2580 tgataaaata attttttgaa gaaatgcgaa aacgtgtggg cggagccatt tggtgacact 2640 cagactttca aatgaattgg tgactggtga caatttatac tatgtcacca aatggcattt 2700 tggtaattta gaagatcctt ttaactttaa ttcaaattcc gacaattctg ggaccaccaa 2760 aaggcgggca ccgtattaat att 2783 //