ID   EU835197; SV 1; linear; genomic RNA; STD; VRL; 912 BP.
XX
AC   EU835197;
XX
DT   21-JUL-2008 (Rel. 96, Created)
DT   01-APR-2009 (Rel. 100, Last updated, Version 2)
XX
DE   Shallot virus X isolate NZ coat protein (CP) gene, complete cds; and
DE   putative nucleic acid binding protein (NABP) gene, partial cds.
XX
KW   .
XX
OS   Shallot virus X
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Allexivirus.
XX
RN   [1]
RP   1-912
RX   DOI; 10.1111/j.1365-3059.2009.02031.x.
RX   AGRICOLA; IND44175971.
RA   Perez-Egusquiza Z., Ward L.I., Clover G.R.G., Fletcher J.D.,
RA   Van der Vlugt R.A.A.;
RT   "First report of Shallot virus X in shallot in New Zealand";
RL   Plant Pathol. 58(2):407-407(2009).
XX
RN   [2]
RP   1-912
RA   Perez-Egusquiza Z.C., Ward L.I., Clover G.R.G.;
RT   ;
RL   Submitted (18-JUN-2008) to the INSDC.
RL   Ministry of Agriculture and Forestry, Plant Health and Environment
RL   Laboratory, 231 Morrin Road, St. Johns, Auckland 1140, New Zealand
XX
DR   MD5; b0759a79e8e3e5ed8090bf9d6d869e95.
DR   EuropePMC; PMC3550721; 23637504.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..912
FT                   /organism="Shallot virus X"
FT                   /host="shallot"
FT                   /isolate="NZ"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand"
FT                   /collection_date="Dec-2007"
FT                   /db_xref="taxon:31770"
FT   gene            49..837
FT                   /gene="CP"
FT   CDS             49..837
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="25 kDa"
FT                   /db_xref="GOA:B5ABX4"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:B5ABX4"
FT                   /protein_id="ACF37244.1"
FT                   /translation="MNEDDLNRSNASGDLNSVNNQRIPAGPPGVNQPLPNVTAGGQNQF
FT                   RPSGGLGNQGSRPTESGNQDELLPTEAEIEAITSDVESNSVAPKATIREILDALQAKRQ
FT                   NATPKDLFSLAWACYHNGSSRFVNLNTDAPCGITHAELKDLVEGFCTLRQFCSYYAKSC
FT                   YVSGKQQKKPPANWSRKGYPEEAKFAGFDFFNAVLSESSPAPPGGMRFKPTQAEILGHS
FT                   MNAKMSIVESRQSSHMVSTRADLLGRQQINEQPKPPMITF"
FT   gene            837..>912
FT                   /gene="NABP"
FT   CDS             837..>912
FT                   /codon_start=1
FT                   /gene="NABP"
FT                   /product="putative nucleic acid binding protein"
FT                   /note="15 kDa"
FT                   /db_xref="UniProtKB/TrEMBL:B5ABX5"
FT                   /protein_id="ACF37245.1"
FT                   /translation="MHPHDFNLLCCLHLTKPSLPNDLKT"
XX
SQ   Sequence 912 BP; 262 A; 261 C; 198 G; 191 T; 0 other;
     atttaggggt gaaggtctgt gttaagttgt cgggtagttc gaaatacaat gaacgaagac        60
     gatttgaatc gttcgaatgc atcaggagac ctcaatagcg tcaacaatca acgaataccg       120
     gcgggaccac ctggcgtcaa ccagcctctc ccgaacgtga cagctggcgg tcaaaatcaa       180
     ttcagaccct cgggaggact tggcaaccaa ggctcacgcc caaccgaatc gggtaatcag       240
     gacgaactct tgcccactga agctgagatc gaagccatca ccagcgacgt tgagtccaat       300
     tccgtagcac ccaaggccac aattcgcgag atcttggacg ccttacaagc taagaggcaa       360
     aacgccaccc cgaaagatct attctcatta gcctgggctt gctaccacaa cggatcatca       420
     aggtttgtga acttgaacac tgacgcacct tgtggaataa cgcacgcgga gcttaaagac       480
     cttgtggaag gcttctgcac gctcaggcag ttctgcagct actacgccaa atcatgctat       540
     gtttcaggaa aacaacagaa gaaacctcct gctaactggt ctcgaaaagg atatcctgaa       600
     gaagccaagt ttgctggctt tgatttcttc aatgcagtgc taagcgagtc ttccccagct       660
     ccaccgggcg gaatgcggtt caaacccacg caagccgaaa ttctcggcca ctcaatgaat       720
     gccaaaatgt ccatagtcga gtcccgccaa tcatcgcaca tggtctcaac cagagccgac       780
     ctactaggcc gccaacagat taacgaacaa cccaagccgc caatgataac tttctgatgc       840
     atccccacga tttcaatctt ctttgctgcc tacatttaac aaaaccctcc ttgcccaacg       900
     acctcaaaac tc                                                           912
//