Dbfetch
ID EU834064; SV 1; linear; genomic DNA; STD; VRL; 1283 BP. XX AC EU834064; XX DT 02-AUG-2008 (Rel. 96, Created) DT 23-MAR-2009 (Rel. 100, Last updated, Version 2) XX DE Tomato yellow leaf curl virus isolate Sh replication-associated protein DE (C1) gene, partial cds; C4 protein (C4) gene, complete cds; and precoat DE protein (V2) and coat protein (V1) genes, partial cds. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-1283 RX DOI; 10.1007/s11262-008-0310-5. RX PUBMED; 19112612. RA Fazeli R., Heydarnejad J., Massumi H., Shaabanian M., Varsani A.; RT "Genetic diversity and distribution of tomato-infecting begomoviruses in RT Iran"; RL Virus Genes 38(2):311-319(2009). XX RN [2] RP 1-1283 RA Heydarnejad J., Fazeli R., Massumi H.; RT ; RL Submitted (17-JUN-2008) to the INSDC. RL Plant Protection Department, Shahid Bahonar University of Kerman, 22 Bahman RL Ave, Kerman, Kerman 7616914111, Iran XX DR MD5; 74313fec823ee39d2962b0e833f86845. XX FH Key Location/Qualifiers FH FT source 1..1283 FT /organism="Tomato yellow leaf curl virus" FT /host="Lycopersicon esculentum" FT /isolate="Sh" FT /mol_type="genomic DNA" FT /country="Iran:Shiraz, Fars" FT /collection_date="2005" FT /db_xref="taxon:10832" FT gene complement(<1..666) FT /gene="C1" FT CDS complement(<1..666) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /note="rep" FT /db_xref="GOA:B5ABL2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B5ABL2" FT /protein_id="ACF04228.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC FT REFHENGEPHLHVLIQFEGKYQCKNQRFFDLSSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWGPVSIVIEGDSR FT " FT gene complement(222..515) FT /gene="C4" FT CDS complement(222..515) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B5ABL3" FT /protein_id="ACF04229.1" FT /translation="MGNHISMCLSNSKASTNVKTNGSSIYPLQTGQHISIRTFRQLRAQ FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAVNPRPSIY" FT gene 980..>1283 FT /gene="V2" FT CDS 980..>1283 FT /codon_start=1 FT /gene="V2" FT /product="precoat protein" FT /db_xref="GOA:B5ABL4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B5ABL4" FT /protein_id="ACF04226.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQ" FT gene 1140..>1283 FT /gene="V1" FT CDS 1140..>1283 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:B5ABL5" FT /db_xref="UniProtKB/TrEMBL:B5ABL5" FT /protein_id="ACF04227.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYR" XX SQ Sequence 1283 BP; 353 A; 260 C; 270 G; 400 T; 0 other; tctgctatca ccttcaatta caatacttac gggtccccat ggccgcgcag cggaagacac 60 gacgttctcg gcgacccatt cttcaagttc atctggaact tgattaaaag aagaagaaag 120 aaatggagaa acataaactt ctagaggagg actaaaaatc ctatctaaat ttgaacttaa 180 attatgaaat tgtaaaatat agtcttttgg ggccttctct ttcaatatat tgagggcctc 240 ggatttactg cctgaattga gtgcttcggc atatgcgtcg ttggcagatt gctgacctcc 300 tctagctgat ctgccatcga tttggaaaac tccaaaatca atgaagtctc cgtctttctc 360 cacgtaggtc ttgacatctg ttgagctctt agctgcctga atgttcggat ggaaatgtgc 420 tgacctgttt ggagaggata aatcgaagaa ccgttggttt ttacattggt acttgccttc 480 gaattggata agcacatgga gatgtggttc cccattctcg tggaattctc tgcaaacttt 540 gatgtatttt ttatttgttg gggtttctag gttttttaat tgggaaagtg cttcttcttt 600 agagagagaa caattaggat aagtcaggaa ataatttttg gcatatattt taaataggcg 660 aggcatggtg aaatgaatcg gtgtctctca aagctctatg gcaatcggtg tatcggtgtc 720 ttatttatac ctagacacca aatggtattt ttgtaatttc gtaaaagtac attacaattc 780 aaaattcaaa atttaaaaat caaatcatta aagcggccat ccgtataata ttaccggatg 840 gccgcgcctt tccttactat gtggtcccca cgagggttct acagacgtca ctgtcaacca 900 atcacattac atcctcaaac gttagataag tgttcatttg tctttatata cttggtcccc 960 aagtattttg tcttgcaata tgtgggaccc acttctaaat gaatttcctg aatctgttca 1020 cggatttcgt tgtatgttag ctattaaata tttgcagtcc gttgaggaaa cttacgagcc 1080 taatacattg ggccacgatt taattaggga tcttatatct gttgtaaggg cccgtgatta 1140 tgtcgaagcg accaggcgat ataatcattt ccacgcccgt ctcgaaggtt cgccgaaggc 1200 tgaacttcga cagcccatac agcagccgtg ctgctgtccc cattgtccaa ggcacaaaca 1260 agcgacgatc atggacgtac agg 1283 //