Dbfetch

Dbfetch

ID   EU809482; SV 1; linear; genomic RNA; STD; VRL; 1716 BP.
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AC   EU809482;
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DT   30-DEC-2009 (Rel. 103, Created)
DT   03-SEP-2012 (Rel. 114, Last updated, Version 2)
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DE   Sweet potato feathery mottle virus isolate OR1-1 polyprotein gene, partial
DE   cds.
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KW   .
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OS   Sweet potato feathery mottle virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
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RN   [1]
RP   1-1716
RX   DOI; 10.1094/PDIS-93-9-0933.
RX   AGRICOLA; IND44294830.
RA   Rannali M., Czekaj V., Jones R.A.C., Fletcher J.D., Davis R.I., Mu L.,
RA   Valkonen J.P.T.;
RT   "Molecular Characterization of Sweet potato feathery mottle virus (SPFMV)
RT   Isolates from Easter Island, French Polynesia, New Zealand, and Southern
RT   Africa";
RL   Plant Dis. 93(9):933-939(2009).
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RN   [2]
RP   1-1716
RA   Rannali M., Czekaj V., Jones R., Fletcher J., Davis R., Mu L., Valkonen J.;
RT   ;
RL   Submitted (09-JUN-2008) to the INSDC.
RL   Department of Applied Biology, University of Helsinki, PL 27
RL   Latokartanonkaari 7, Helsinki 00014, Finland
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DR   MD5; ee9a4b11f0f557891b89a1d7d048bf7d.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1716
FT                   /organism="Sweet potato feathery mottle virus"
FT                   /host="Ipomoea batatas (sweet potato)"
FT                   /strain="RC"
FT                   /isolate="OR1-1"
FT                   /mol_type="genomic RNA"
FT                   /country="French Polynesia:Moorea"
FT                   /db_xref="taxon:12844"
FT   CDS             <1..1552
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D2CTJ6"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:D2CTJ6"
FT                   /protein_id="ACJ01826.1"
FT                   /translation="LMVVLAVHYTLLKLGIQESEFDECCVFFANGDDLLLAMRPDTAHL
FT                   LDKFSECFSELGLNYDFSSRTRNKEELWFMSHCGVKRDGVFIPKLEPERIVSILEWDRS
FT                   HEPIHRLEAICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARSGKAPYIAETALKA
FT                   LYTGIQPSAFELSTYAKVLNEMYDDSVLQENELEVYHQSNERTEFKDAGADPPAPKPKN
FT                   IPPPPTITEVTDPEDPKQAALKAARAKQPATIPESYGRDTSKEKESIVGASSKGVRDKD
FT                   VNVGTVGTFVVPRVRMNANKKRQPMVNGRAIINFQHLSTYEPEQFEVANTRSTQEQFQA
FT                   WYEGVKGDYGVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDH
FT                   AVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTP
FT                   ARAKEAHLQMKAAALKNAKNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ"
FT   mat_peptide     <1..604
FT                   /product="nuclear inclusion protein b"
FT                   /note="NIb"
FT   mat_peptide     605..1549
FT                   /product="coat protein"
FT                   /note="CP"
FT   3'UTR           1553..1716
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SQ   Sequence 1716 BP; 534 A; 318 C; 416 G; 448 T; 0 other;
     acttatggtt gtgttagcag tacactatac actgctgaaa ctaggtattc aggagagtga        60
     gtttgatgaa tgctgcgtct tcttcgcgaa tggagatgat ctattactgg caatgagacc       120
     agacacagct catttactgg ataagtttag tgagtgcttt tcagagttag gactcaatta       180
     tgatttttca tcgcgaacca gaaataaaga agagctatgg tttatgtcac actgtggagt       240
     gaaacgtgat ggggtattca taccgaagct ggagcctgag agaatcgtct ccattcttga       300
     atgggatcgc tcacacgaac cgattcatcg attggaagca atatgtgctg cgatggtaga       360
     atcatggggt tatgatgaac ttcttcatca tatcagaaaa ttctatgcat gggtattgga       420
     ccaagcccca tacaatgaat tagcacgaag tgggaaggca ccatacatag ctgaaactgc       480
     acttaaagca ctctatactg gcatccaacc tagtgctttt gaattgagta cgtatgcaaa       540
     agtgcttaac gaaatgtatg atgatagtgt acttcaggag aatgagttag aagtatacca       600
     tcaatctaat gaacgtactg aattcaaaga tgcaggagcg gaccctccag cccctaagcc       660
     taagaatatc cctccaccac ccacaataac tgaggttact gatccagaag acccaaagca       720
     ggcagctttg aaagctgcac gagctaagca acccgcaacc attccagaat catatggacg       780
     agacactagc aaagagaagg agtcaatagt gggggcatca tcaaagggtg tgagggataa       840
     agatgtaaac gttggtacag ttggtacgtt tgttgtgcca cgtgttagga tgaatgcaaa       900
     caagaaaagg caaccgatgg taaatggaag ggccattata aatttccaac acttgtcaac       960
     atatgagcca gaacagtttg aggttgcaaa cacccggtcg actcaagaac agtttcaagc      1020
     atggtatgag ggagtgaaag gggactatgg tgttgacgat acaggaatgg ggatcttatt      1080
     gaatggatta atggtttggt gcattgaaaa tggcacatcc ccaaatataa atggtgtgtg      1140
     gacaatgatg gatggtgatg agcaagtgac atatccaatt aaaccattgt tggaccatgc      1200
     agtgcctact tttaggcaga ttatgacgca cttcagtgac gttgctgaag cttacataga      1260
     gatgcgaaac cgtacaaagg cgtacatgcc aaggtatggt ctacaacgta atttgactga      1320
     tatgagtctt gcgcgatatg catttgattt ctacgagctg cattcaacca cccctgcacg      1380
     tgcaaaagaa gcacatttac agatgaaggc agccgcactt aagaatgcga aaaatcggtt      1440
     gtttggtttg gacggaaacg tctccacgca agaagaagat acggagaggc acacgacaac      1500
     tgatgttact agaaatatac ataacctctt aggaatgagg ggtgtgcaat aggacatcct      1560
     ctgcactgta gtttatactt atgttatctt tagtatgcct ttaatttaaa ttcgtgtctt      1620
     tcagtcccga aggagatggt tgagtgcata acatggtgag attatatctc ggttattgca      1680
     tttgagaagt cgcctttcta ttacgtatca taaggg                                1716
//