ID   EU796089; SV 1; linear; genomic RNA; STD; VRL; 2203 BP.
XX
AC   EU796089;
XX
DT   16-JUL-2008 (Rel. 96, Created)
DT   30-JUL-2009 (Rel. 101, Last updated, Version 2)
XX
DE   Raspberry bushy dwarf virus isolate CmRR-1 segment RNA2, complete sequence.
XX
KW   .
XX
OS   Raspberry bushy dwarf virus
OC   Viruses; Riboviria; Idaeovirus.
XX
RN   [1]
RP   1-2203
RX   DOI; 10.1007/s10658-008-9362-6.
RX   AGRICOLA; IND44160414.
RA   Mavric Plesko I., Virscek Marn M., Sirca S., Urek G.;
RT   "Biological, serological and molecular characterisation of Raspberry bushy
RT   dwarf virus from grapevine and its detection in the nematode Longidorus
RT   juvenilis";
RL   Eur. J. Plant Pathol. 123(3):261-268(2009).
XX
RN   [2]
RP   1-2203
RA   Mavric Plesko I., Virscek Marn M., Sirca S., Urek G.;
RT   ;
RL   Submitted (06-JUN-2008) to the INSDC.
RL   Plant Pathology, Agricultural Institute of Slovenia, Hacquetova 17,
RL   Ljubljana SI-1000, Slovenia
XX
DR   MD5; e347636bc78f4070b25a043e810276d4.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2203
FT                   /organism="Raspberry bushy dwarf virus"
FT                   /segment="RNA2"
FT                   /host="red raspberry"
FT                   /isolate="CmRR-1"
FT                   /mol_type="genomic RNA"
FT                   /country="Slovenia"
FT                   /db_xref="taxon:12451"
FT   CDS             107..1183
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="UniProtKB/TrEMBL:B5A2K2"
FT                   /protein_id="ACF33429.1"
FT                   /translation="MFSRSSSTRSSLVGSRSGSIFGGGSVKKSSTVRGFSAGLERSRGL
FT                   PSASAGENQISLPGLRIPVKTSSQPGNYYLKERGIDLPIVQQQKFLAADGKEMGECYLL
FT                   DTSRTDLLDAAKAALNESNLLEFNKFKEFKKYKGKNNEFPLVEASVFDKLIRKDDSPIH
FT                   LNRLLIAVVPAVGKGTPGTARIKIRDARLDDGYGELFSSENRVDSGYIYCINVGYSVPK
FT                   SEIDYKINIDFAGVPIKDGKSPIWVKAAFSLAGGAPVFFDGTMSLGAEILPDSHKELLG
FT                   TSALLLNEANSNRKSFSGDDGELRRDYPYKRFEEISPLDSISQVDTASQDSVNEVNTEN
FT                   VQNGTGEVYLAPPSHSVY"
FT   CDS             1301..2125
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:B5A2K5"
FT                   /db_xref="InterPro:IPR009516"
FT                   /db_xref="UniProtKB/TrEMBL:B5A2K5"
FT                   /protein_id="ACF33430.1"
FT                   /translation="MSKKAVPPIVKAQYELYNRKLNRAIKVSGNQKKLDASFVRFSESS
FT                   NPETGKPHADMSMSAKVKRVNTWLKNFDREYWDNQFASKPVPRPAKQVLKGSSSKSQQR
FT                   DEGEVVFTRKDSQKSVRTVSYWVCTPEKSMKPLKYKEDENVVEVTFNDLTAQKAGDKLV
FT                   SILLEINVVGGAVDDKGRVAVLEKDAAVTVDYLLGSPYEAINLVSSLNKINFRSMTDVV
FT                   DSIPSLLNERKVCVFQNDDSSSFYIRKWANFLQEVSAVLPVGTGKSSTIVLT"
XX
SQ   Sequence 2203 BP; 590 A; 432 C; 530 G; 651 T; 0 other;
     ctggacatct cgagtttgct ctttggtggt cattgagtgt cgaatttagt gtctgattct        60
     cttttctcta ttaaaagtaa aatatatcct tggtgactgt gtcatcatgt ttagcagaag       120
     ttcctctact cgcagctccc ttgtggggag caggagtggc tccatttttg gagggggatc       180
     tgttaagaag tctagtactg tgagggggtt ctctgccggt cttgaaagat cgcgaggatt       240
     accttccgcc agcgctggtg aaaaccagat ctcgttgccg gggcttagga tcccagttaa       300
     gacttcttca caaccgggaa attactacct taaggagaga ggtattgatt tgccaattgt       360
     gcaacagcag aagtttctgg ccgctgacgg caaagaaatg ggggagtgtt accttttgga       420
     cacttcccga actgatctgt tggacgctgc taaagcagcg ttaaacgagt ctaatcttct       480
     tgagttcaac aaatttaagg aatttaagaa gtataaggga aagaataatg aattcccttt       540
     ggttgaagca tcggtttttg acaaactgat caggaaggac gattctccca tacaccttaa       600
     caggctttta atagctgttg tgcctgccgt aggaaaagga acaccaggaa ccgcacgaat       660
     taaaattcgt gacgcgcgcc tggatgatgg ttatggtgag ctttttagtt ctgaaaatcg       720
     tgtggactct ggctacattt attgtataaa tgtaggctat tctgttccta agtccgaaat       780
     cgattacaaa atcaatattg attttgccgg ggtacccatc aaagatggta agtccccgat       840
     ttgggtcaaa gctgccttct ctttagctgg tggcgcccct gtgttctttg atggaacaat       900
     gagcttgggt gctgagattt tgcccgactc tcacaaagag ttgttgggca cctctgcttt       960
     gttgttgaat gaggcgaatt ccaataggaa gtcgttctct ggtgatgacg gagagcttag      1020
     aagggattat ccttataagc gttttgagga gatttcacct ttggattcta taagtcaggt      1080
     cgatacggcc agtcaagact ccgttaatga ggtgaacacc gaaaatgttc aaaacggtac      1140
     tggtgaggtg tatttggcac ctccttcaca ttccgtttat taataactta gttgttaatg      1200
     cattgaatgc atatgacaca tagtgtcagt tttgtggtta aaatttttct aaccgcatta      1260
     tatttcattg ttgaattaat actaagtatt taagttttca atgtcgaaga aagctgttcc      1320
     accaatcgtt aaggctcaat acgagcttta taatcgtaag ttgaacagag ctatcaaggt      1380
     ttccggcaat cagaagaagc tagatgcttc ttttgtcagg ttcagtgaga gctctaaccc      1440
     agaaactggg aaacctcacg cggacatgtc tatgtctgct aaggttaagc gcgttaatac      1500
     gtggcttaaa aattttgatc gcgaatattg ggataaccaa ttcgcatcaa aacccgttcc      1560
     tagacctgca aaacaggtct tgaagggttc atcctccaaa tctcaacaac gagatgaagg      1620
     agaggtggtc tttacccgaa aagactccca gaaatccgtt aggactgtgt cctattgggt      1680
     ttgtactcct gagaagtcaa tgaaacctct caaatataag gaggacgaaa acgtcgttga      1740
     agttaccttc aatgacctca cagctcaaaa ggctggtgac aaattggttt ccatcctgtt      1800
     ggaaatcaat gtggtgggcg gtgccgtcga cgacaagggt cgagtggctg tcctggaaaa      1860
     ggatgctgcc gtgacggttg attaccttct cggaagcccg tatgaagcca taaatcttgt      1920
     ttcgagttta aacaagataa attttagatc catgacggat gtggtagact ccataccatc      1980
     gctcttaaat gagcgtaagg tgtgtgtctt ccagaatgac gatagttcgt cgttttacat      2040
     tcggaaatgg gccaacttcc ttcaggaagt ttcggcagtt ttaccggtag gaaccggtaa      2100
     atcttccaca atagttctga cttagttcgg actatttgcc tgctagtggg catatctcac      2160
     aatttgtgag ataaacggca tagccgttgt ttgctgagca aac                        2203
//