ID EU779934; SV 1; linear; genomic RNA; STD; VRL; 6043 BP. XX AC EU779934; XX DT 27-JUN-2008 (Rel. 96, Created) DT 14-NOV-2009 (Rel. 102, Last updated, Version 4) XX DE Sclerotinia sclerotiorum RNA virus L polyprotein gene, complete cds. XX KW . XX OS Sclerotinia sclerotiorum RNA virus L OC Viruses; Riboviria; dsRNA viruses. XX RN [1] RP 1-6043 RX DOI; 10.1128/JVI.01897-08. RX PUBMED; 19073734. RA Liu H., Fu Y., Jiang D., Li G., Xie J., Peng Y., Yi X., Ghabrial S.A.; RT "A novel mycovirus that is related to the human pathogen hepatitis E virus RT and rubi-like viruses"; RL J. Virol. 83(4):1981-1991(2009). XX RN [2] RP 1-6043 RA Liu H., Fu Y., Jiang D., Li G., Xie J., Yi X., Ghabrial S.A.; RT "The L-dsRNA segment in hypovirulent strain Ep-1PN of Sclerotinia RT sclerotiorum represent a novel mycovirus closely related to Hepatitis E RT virus"; RL Unpublished. XX RN [3] RP 1-6043 RA Liu H., Fu Y., Jiang D., Li G., Xie J., Yi X., Ghabrial S.A.; RT ; RL Submitted (30-MAY-2008) to the INSDC. RL Plant Pathology, College of Plant Science and Technology, Huazhong RL Agricultural University, Shizishan No.1, Wuhan, Hubei 430070, P. R. China XX DR MD5; e0f6f681c21148c38174fe777c048f0f. DR EuropePMC; PMC2643757; 19073734. XX FH Key Location/Qualifiers FH FT source 1..6043 FT /organism="Sclerotinia sclerotiorum RNA virus L" FT /host="Sclerotinia sclerotiorum hypovirulent strain Ep-1PN" FT /mol_type="genomic RNA" FT /country="China" FT /isolation_source="sclerotium on diseased eggplant" FT /collection_date="1991" FT /db_xref="taxon:542957" FT CDS 42..5936 FT /codon_start=1 FT /product="polyprotein" FT /note="contains viral methyltransferase, helicase and FT RNA-dependent RNA polymerase (RdRp) domains characteristic FT of the replicases of positive-strand RNA viruses" FT /db_xref="GOA:B3VMV9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B3VMV9" FT /protein_id="ACE88957.1" FT /translation="MIKQKQQPKPDWQTVPPKQRHSPGIKGPQSRTTRPTRSSRSALSA FT PILRLDHQNAHRAPDHPVNVLIGEHLRGEVNDIIVASRSRWTINVAQPHTEAQVAALEA FT SFPEYNFVSSYAHAHHPSTQAARHALELLTWKLVDPAHTTEIGPSYSSLFRRARPAFAH FT YDMPLLTVRDGARRNLAMLSRHKTLDERETRALDALRTGMPSGEFCPLSGEDCSHKSSA FT LVSFFSLHDASPAVLDAMMARKDALVAYVAMHLPVALLATSSFDDVATGAHCRRDDDTG FT HWHMSFPGSGAAGYTHSLASLSAWSAGWKGLNLTCEIVRQFGTIVHMRVVRTFGPSTEN FT TPISIGNLLSSLVVIPPFKSTAHESEAFTTDAGKYGALVDRLVLEDLTDAPVKKALARI FT AALSPAIRVGSRVQSAAWDIPYLKRNPVAVAAVRAALVLSADIEFCENLAANDIAPIRA FT ALVERLAATMPLLPALLPKFLGGAPGNGLVSPSDILSARVRQWFKITPTLTPRMSVPGQ FT LPRVADIEIAAPPSTAPAYGHPETAPPPAHGPDDAPSGKREHATPGDIFFDAFSDPIVD FT PTYQPTDISRGVESDAVATLQSLPAPSAVPVASQPDLSEIFQTEARVLNSLSGTDGATA FT LAKRVLEHPPPGSLPIVLAAIVGPPGSGKTHGLRALVGNLDAVIVPTNQLADSWRAHAP FT DTAVFTVERFLADPPAEPYRRLVVDECFKLAPSHLIRALAHGKTCYIAGDPAQPRYEGS FT LGEPLTLAELPICYLARLTKSRRCPKDVPRFLTSVGEPSFVSISTVDYSFGPVDPDVDP FT RQTLHITAHQRNTNVHPGTVTIDQVQGLEAENVVIHCFPDDAPMWLRPGRRVVGLTRHS FT RRLTVLAHACKVTYFPTAYDSASTASPARENHPAAFTTHPTPVKPEPTQTGEAYDANDA FT AACQLTSQHANSTAEPDPFSARAFDIDLLSAEPDVLFPVYPSAPPSLSDTDWSKYSDKG FT APVLPTGHDNPLFPSPRLLPRDWTEDTDTRPIAEIHDLDAVTDEELNAMYPADPTQAQA FT VRDAIRYRQVREAHNPALFLSAFEDAHRPPRPTVEDVNEVDDAEEPPVAGLIAHIVTRV FT TGGLSSRFGIPPTVPQRAPSRADRLPTASASPAPLALVTDALTELQPPGELDYATIANL FT TAIELPALDPRVNLAAHLPRDTKPCPPRTQLPMCGVQWDSSDQKSALFAIADRYTRPPL FT ARNSKPTADAAALAHSFFTAFIDPAKTPAPIDITGAIGTWLRKRTPAQLTAIDAADPLG FT STARSWRAQFFLKAQAKAKFGSYGRETIECGQGILATSKGLNAQICPIVCATMEVLQGC FT LYDEVLIDCGYNGAIIDGHVARHILGHPTTETDLTQQDSTHDETCRLLIDEVLRRLNIP FT LDLISEYLESRSHRSVTGLSYKVSFDVYERMFSGEPMTLLGNCIMNMALVAHRFALPPR FT SASVWKGDDGLLRGMHFPRPSAASLLARIGARVKVDHQPVPEFTSRVHLSSGRSLPDPA FT KVLAKFTLRRFDAHNVLEYHAAHVDQHFDPSPLEAAELACAMAARRQISLSSALTIVRT FT CHALNDLRYFISLVKLDTTDPLAACLALGPGATTSSGFQVHPDSVIIADSRDQDCAVVA FT LATAARVTYRTALRALRRHQSRQHAVMTHLTRTRGRFPKAFITGNIAIAAACTDLGVFF FT ATDPTTAASRLTAVLSFDGHCVAVQTNRRNATMTTLYPDLTDAPVAGTDWHAMDNPLPT FT WIRLTMLALEIVIRLLLLVVQFTHVTTALMLTSLTAGIGGPFAGLVVGLTSLVPEILSN FT IAARLVAPVPPRPCSRFRQWPSWHASARVRHHLTRLIALTFASQLWMFLAIVYLENTSG FT PRFDRNDDRPDRGVAWTPADSPTLMANVLPCCRTTDETRCFRTARRRYAMTDHPDKNPG FT VTFTQYGYSQDFFDRLLADPHARRRFCMEYR" XX SQ Sequence 6043 BP; 1143 A; 2294 C; 1337 G; 1269 T; 0 other; cgaacatcac cttatccaga tctcacttct ggatcactac catgattaag caaaagcaac 60 aaccgaagcc cgactggcaa acagtcccac caaaacaacg ccacagcccc ggcattaagg 120 ggccccaatc acgaactacg cgtcccacgc gttcctctcg cagcgccctg tctgccccga 180 tcctccgcct ggatcaccag aatgcacacc gtgcccccga ccaccccgtc aatgtcttaa 240 ttggcgagca cctccgtggg gaggtcaatg acatcatcgt agcctctcgc tcacgatgga 300 ccatcaacgt cgcccaacct cacactgagg cccaggtcgc cgcccttgag gcatcattcc 360 cggagtacaa cttcgtgtcc tcctacgcgc acgcccacca cccgagcact caggctgcgc 420 gccacgcatt ggagttgctc acttggaaac ttgttgaccc ggcccacaca actgagatcg 480 gccccagcta ctcgtccctt ttccgtcgcg cccgccctgc cttcgcccac tatgacatgc 540 ctctcctcac cgtccgcgac ggtgcccgtc gcaacctcgc catgctctcc cgtcacaaga 600 ccttggacga gcgtgagacc cgtgcccttg acgctttacg cactggtatg ccgtctggtg 660 agttttgccc gttgtctggt gaggactgta gccacaagtc ttccgctctc gtctctttct 720 tctctctgca tgacgcttcc cctgccgtcc ttgacgcaat gatggcccgc aaagacgccc 780 tggtcgctta cgttgccatg catctccctg tcgccctgct tgccaccagc tcttttgacg 840 acgtcgccac cggtgcccac tgccgccgcg acgatgacac aggtcactgg cacatgtcct 900 tccccggttc tggtgctgct ggttacaccc attccctcgc ttctttgtct gcctggtcgg 960 ctggctggaa aggtttaaac ctcacttgtg aaatcgtccg ccaatttggc accatcgtcc 1020 acatgcgtgt tgttcgcacc ttcggcccat ccactgagaa cacgcccatc tccattggca 1080 acctcctcag ctcactcgtc gtcatccccc ccttcaagtc cactgcacac gagtctgagg 1140 ctttcaccac cgacgcaggc aaatacggtg cactcgtcga ccgactcgtc cttgaggatc 1200 tgactgacgc tcccgtcaag aaagctctgg cccgcatcgc tgcgttgtcg cccgccatcc 1260 gcgtcggctc ccgtgttcag tccgccgcgt gggacatccc ttacttgaaa cgcaaccccg 1320 tcgccgtcgc cgctgtccgc gcagcacttg tattgagtgc tgacatcgaa ttttgcgaaa 1380 acctcgccgc caacgacatc gccccaatcc gcgccgccct cgtcgaacgt ctcgccgcca 1440 ccatgcctct cctgcccgct cttctgccta agttcctcgg cggcgcccct ggcaacggtc 1500 tggtctcccc ctctgacatc ctctcagcac gcgtacgaca atggttcaag atcacgccaa 1560 cgttgacacc acgaatgagt gtgcccggcc agttaccacg cgtcgccgac atcgagatcg 1620 ctgctccacc atccaccgcc cctgcttacg gccatcctga gaccgccccc ccgccggcac 1680 acggcccaga tgacgcccct tctggaaagc gcgagcacgc tacgcccggt gacatcttct 1740 tcgacgcttt ctctgacccc atcgtcgacc cgacatatca accgacagac atctctcgcg 1800 gcgttgaaag cgacgctgtt gccaccctcc aatccttgcc cgccccctct gctgtccctg 1860 tggcttcaca acccgacctt tccgagatct tccagaccga agcccgcgtt ctaaatagtc 1920 tctctggcac cgatggcgcg acagcccttg ccaagcgtgt tcttgaacac ccgcccccag 1980 gatctctacc tatcgtgctg gctgctatcg ttggcccccc cggctcaggc aaaactcatg 2040 gcctccgcgc actcgtcggc aatctcgacg ccgtgattgt cccaaccaat cagctcgccg 2100 actcttggcg cgcgcatgct cccgacaccg ccgtcttcac cgtcgaacgc ttcctcgctg 2160 acccccccgc agaaccgtac cgccgcctgg ttgttgacga atgctttaag ttggctccgt 2220 ctcatctcat ccgtgcgctt gcccatggga agacatgtta catcgctggt gacccggccc 2280 aaccgcgcta cgaaggaagc cttggagaac ccttgaccct cgccgaactc ccaatctgct 2340 accttgcccg cctcacgaaa tctcgacgtt gtcccaaaga tgtccctcgc ttcctgacct 2400 ctgttggcga accttccttt gtctcgatct ccactgtcga ttactctttt ggccctgttg 2460 acccagacgt cgacccacgc cagacactgc acatcaccgc ccaccagcgc aacaccaacg 2520 tgcaccctgg cactgtcacc atcgaccagg ttcaaggttt ggaggctgag aacgtcgtca 2580 tccattgttt ccccgatgac gcgcccatgt ggctccgccc tggtcgtcgt gtcgttggtc 2640 tcactcgtca ctctcgccgg ctcaccgtcc ttgctcacgc ttgtaaagtc acctacttcc 2700 ccactgcgta cgactccgcg tcaaccgcca gccctgcccg tgaaaatcac ccggctgctt 2760 tcaccacaca cccgaccccc gtcaaacccg agcctaccca aactggggag gcctatgacg 2820 ccaacgacgc cgccgcatgc caactcacat cacagcacgc caactcgacc gccgaacccg 2880 accccttctc tgcacgcgcc tttgacattg atctactgag tgccgaaccc gatgtcctct 2940 tccccgtcta cccatccgcc ccccccagcc tttccgacac cgactggtcc aagtacagcg 3000 acaaaggtgc cccagtctta cccaccggcc atgataaccc cttgttcccg tcaccacgac 3060 tcctgcctcg cgattggact gaagacactg acacccgccc catcgctgag atccacgacc 3120 ttgatgctgt cactgacgaa gaactcaacg ccatgtaccc cgctgaccct acccaggcac 3180 aagctgtccg cgacgcgatc cgctaccgtc aagtgcgtga ggctcacaac cctgctctat 3240 ttctttctgc gttcgaagac gctcaccgac cgcctcgtcc gaccgttgaa gacgttaatg 3300 aagtcgatga cgccgaggag ccccctgtcg ccggactcat agctcacatc gtcacgcgcg 3360 tcacgggtgg tctgtcctca cgcttcggca ttccgcctac cgttccccaa cgagcacctt 3420 ctagagctga ccgtctgccc actgcctctg cctcccccgc cccccttgca cttgtcactg 3480 atgctctcac cgagctacaa ccacccggag aactggatta cgccactatc gccaatctga 3540 ccgccattga gctccccgcc ctggacccac gcgtgaactt ggccgcccac cttccccgtg 3600 acaccaaacc ctgccccccc cgcacgcagt taccaatgtg cggtgtccaa tgggattcct 3660 cggaccagaa atcagcactt tttgccatcg ccgatcggta cacacggccc cccctcgcac 3720 gtaattcgaa accgacagct gacgccgctg cacttgctca ctctttcttc actgctttca 3780 ttgaccctgc caagaccccc gcccccatcg acatcaccgg agctattggc acctggcttc 3840 gcaagcgcac ccccgctcag ttgacggcca ttgacgcggc tgaccccctc ggctccaccg 3900 cacgctcctg gcgcgctcag ttctttctca aggcccaggc gaaagcgaag ttcggcagct 3960 acggacgcga aaccatcgaa tgtggtcaag ggattctcgc cacgtcgaaa ggcctcaatg 4020 cgcaaatttg tcccatcgtc tgtgccacta tggaagtatt gcaaggatgt ctctatgatg 4080 aggtcttgat cgactgcggg tacaatggtg caatcatcga cggccacgtc gcacgacaca 4140 tcctcgggca ccccacgact gaaacggact taacgcaaca ggacagcacc cacgatgaaa 4200 cttgccgcct tctgattgat gaggttctcc gccggctcaa catacctctt gacctcatca 4260 gcgaatactt agaatcccgc tcgcaccgct ccgtcactgg cctgtcgtac aaggtctcat 4320 ttgacgtcta tgaacgcatg ttttccggag aaccaatgac tctcctaggc aactgcatca 4380 tgaacatggc cttggtcgct catcgttttg ctctcccccc ccggtcagct tccgtctgga 4440 aaggtgatga cggtctcctg cgtggcatgc acttccctcg acccagcgcc gccagcctac 4500 tcgcgcgcat tggagcacgt gtcaaagtcg accatcagcc cgtcccagag ttcacctccc 4560 gtgtccacct ctcttctggc cgttcgcttc ccgaccccgc caaggtgctt gccaaattca 4620 cactccgccg cttcgacgcg cacaacgttc tcgagtacca cgcagctcac gtcgaccagc 4680 acttcgaccc gtcacccctt gaggctgctg aactcgcctg cgctatggca gcacgtcgcc 4740 aaatttccct ctcgagcgca ttgacgattg tccgcacgtg tcacgccctc aatgacctgc 4800 gttacttcat cagtctcgtg aaactcgaca ccacggaccc cctcgccgcc tgccttgccc 4860 ttgggcccgg ggccaccaca tcctctggct tccaagttca ccctgactct gtgattatcg 4920 ctgattcccg cgaccaggac tgcgccgtag tcgcccttgc caccgctgcc cgcgtgactt 4980 accggactgc actccgcgct ctccgccgcc atcaatcccg acagcacgcc gtgatgacac 5040 acctcacgcg cacgcgtggc cgtttcccga aggccttcat caccgggaac attgccatcg 5100 ccgcagcatg cactgacctt ggagttttct ttgcaactga ccctacgacc gcggcatccc 5160 gtctcaccgc tgtgctctct tttgacggac actgtgttgc tgttcaaacc aaccgcagga 5220 acgctaccat gacgaccctc tacccagatc tgactgacgc cccggtcgct ggtactgact 5280 ggcacgcgat ggacaacccg ctacccacct ggatccgcct gaccatgctc gccctcgaaa 5340 tcgtgatacg actactgtta ctcgtggtcc agttcacaca tgtcaccact gcgctaatgc 5400 tcaccagtct gaccgccggg attggaggac cgtttgccgg tctcgtcgtc ggacttacca 5460 gcttggtccc cgagatactc agcaacatag cggcccgcct cgtcgccccg gtcccaccgc 5520 gcccatgcag ccgctttcgt caatggccat cctggcacgc ttccgcccga gtacgacacc 5580 acctcacccg cctcatcgca ctgacattcg ccagccaatt atggatgttt ctcgcaatag 5640 tgtaccttga gaacacatcc ggtccacgct ttgacaggaa cgatgaccga cccgatcggg 5700 gcgtcgcctg gacccccgcc gacagtccga ccctcatggc caacgtgctc ccctgttgcc 5760 gcacgactga tgaaacgcgc tgctttcgta ctgcccgccg tcgctatgcc atgaccgacc 5820 accccgacaa gaacccgggc gtcacattta cacaatacgg ttatagtcaa gacttctttg 5880 accgcctctt ggctgaccct cacgcccgac gacgcttttg catggagtat cgttaacact 5940 cccctctctc cacacacaca tgtagacggt tggtactact caaagcccaa cacagtttta 6000 cagcagaatc cactgcaccc tatgttatgt tcacaaccta ggg 6043 //