ID EU779803; SV 2; linear; genomic RNA; STD; VRL; 6679 BP. XX AC EU779803; XX DT 31-OCT-2008 (Rel. 97, Created) DT 30-SEP-2011 (Rel. 110, Last updated, Version 2) XX DE Tomato yellow blotch virus strain Minnesota, complete genome. XX KW . XX OS Tomato yellow blotch virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; unclassified Tymoviridae. XX RN [1] RP 1-6679 RA Almeyda-Becerra C.V., Lockhart B.E., Swenson A.S.; RT "Characterization of Tomato yellow blotch virus, a new tymovirus occurring RT in greenhouse-grown tomatoes in Minnesota"; RL Unpublished. XX RN [2] RP 1-6679 RA Almeyda-Becerra C.V., Lockhart B.E., Swenson A.S.; RT ; RL Submitted (30-MAY-2008) to the INSDC. RL Plant Pathology, University of Minnesota, 1991 Upper Buford Circle, St. RL Paul, MN 55108, USA XX RN [3] RC Sequence update by submitter RP 1-6679 RA Almeyda-Becerra C.V., Lockhart B.E., Swenson A.S.; RT ; RL Submitted (29-SEP-2011) to the INSDC. RL Plant Pathology, University of Minnesota, 1991 Upper Buford Circle, St. RL Paul, MN 55108, USA XX DR MD5; 6d973c9c7674283b33915c14f06b79ba. DR RFAM; RF00233; Tymo_tRNA-like. XX CC On Sep 29, 2011 this sequence version replaced gi:209944017. XX FH Key Location/Qualifiers FH FT source 1..6679 FT /organism="Tomato yellow blotch virus" FT /host="Solanum lycopersicum (tomato)" FT /strain="Minnesota" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Jul-2006" FT /db_xref="taxon:544743" FT 5'UTR 1..143 FT CDS 144..2168 FT /codon_start=1 FT /product="movement protein" FT /db_xref="InterPro:IPR004935" FT /db_xref="UniProtKB/TrEMBL:G4RIK7" FT /protein_id="AEP40394.1" FT /translation="MSHVLSSCPRSSQLYIPPRCFHQPHTQLSRRTTSRLSFLLSLSHT FT KGGHTSHSIFRNPSFRTGHRSTPPPHSQNYRNPSSLHPLETPRPCPFNRDVHEALQIPE FT ASGHQPKFLPTSKLPPNSSRHLSVPRDVDSAANHSQLLHARRSHVLPPLPHSGPLHELR FT PAANPLLQPYCPTRIPLHQPFSLSIHLYLSDSRPHTPLHPRISPRRQLRPASRCPLVVK FT DSLHLSSIPLSVRNSPGILGPLPLHSHTAWPPSKTPSSPPCHPLSHLKSSPPSPLSPLE FT STILSTPKSAAGSKRVRQRTRTPNSGVILHDTRLPGTSTGNLPSPTPPRSSYSPLGLQR FT PLYLHSSRPHSPDLRPRRLRQNSIQQARTQMGHPKSLGQPPDFCPPKRSNTTTSRLRVP FT SQSPPTFPPPPPPTLAAIPPLLFPSPIHTHHPSPCPTTSNPFSNTPRQRPILPSVYRGP FT IAFTIPPFHPYNKPFTIPLPCGKQLRRLLNATKRLLPASSKETTPLSSLVPSLFLREGT FT SCFTLPALTSNPPLPIPPLLHSLLSHMLVLRNRLLPGFAPQPALLSFSKSFLTTNQLLP FT LPLPLKALFIITPQLLSLYHHETSPLPPQQLHDNYHNSLHPDQFHLHWTLTSISVSSPT FT PFLPFDLPHPPPPSLSTQPPPTPPFPSPQPTLITPSADA" FT CDS 151..5961 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:G4RIK8" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G4RIK8" FT /protein_id="AEP40395.1" FT /translation="MSYQAALEALNSTSHRDASTNPILNSVVEPLRDSLSSYPYLIPKE FT DIPLILSFGIPVSGLGTDPHPHPIHKTIETHLLFTHWRHLARVPSTVMFMKPSKFRKLQ FT AINPNFSQLLNYRLTPADTCRYPETSTQLPTTPSCFMHDALMYYHPSHILDLFMSCDQL FT QTLYCSLIVPPESHFTNLSLFPSIYTYQIHGRTLHYTPESHHAGSYDQPLDALSWLKIH FT SISHPSLSLSVTRLESWGPCHSILIQRGLPPRHPLHHPATLSPTSNLPPPPPSHPSRAP FT SSQLQSLQLAASVFDNELAPQTLVSSFMIPDCLELPQATFLRQPLRDRLIPLSVYNALF FT TYTRAVRTLRTSDPAGFVRTQSNKPEHKWVTPKAWDNLQTFALLNAPIRPQVVYEFLLN FT PLQRFRLHLHQHWRRYLLFSSPLLSTLITLPLVLPLPIPFPIPLVKDLFYHRFIEDQLP FT SPSLPSIHTTNHSPSHFLAENNSAGFSMPPNAFSPPLQKRPPPYPHWFHPSSYGKEPHA FT SHSQPSLQTPPSPFPRFSTLSCPTCWSCATGCFPDSRLNPPCSASQRASLPPTSCSPSP FT SLSKPSSSSPHNSYPFTIMKPLPCPRNNSTTTTTTLSIPTSSTSTGLSPPYPFHPQPPS FT SPSTSLTHLPLLYQLNPPQLPLFHRLSQLLLLLLLTLERPPNPPSSSDHPHPSPPITIS FT PPPPHDTSPPIVVDPSHVSHHPYHHLTSLSIPSILNDPTYETRIRSGFISINNSPYLPI FT SLFAPSSTSDSTSLLFKVPPTLAHLPVYSPPEPSPTPITPTQSTLPTGALTFTPASQPS FT VTPLPSYPDPPPSLSTQPLLTDPTCTGPVTTFELLYPAAYHPDTATFQTRLRCLPPTPL FT PLPQNKCLLTAFSSQTHYSEESIWHTLQTLLPDSLLSNPEISTLGLSTDILTTLCYYYH FT LQAVVLCPNRELRFGITTSSQTITLSYEPGPPRHFSSRPRLLGSAPHSNPDSSPLVRHA FT LRFKHNHTTFPSPLPTPTLLPSLTPKTMKNGFDGVTSKLTQPHPNGPSLRDKLFTLDSL FT IDHSTEKSLPVIHISGFAGCGKTHPIQHLLKTRPFHNFRLSTPTNELRSEWKRDMRPTP FT ENIWRFSTWETSLFKHSEILVIDECYKMPRGYLDLSILADPHLKLVILLGDPLQGEYHS FT NNPHSTNHHLPSEVLRFRSYIDCYCWWTYRLPIKTARLFHIPTFSKQPGIITTSHTHPN FT QSKNLVNSIPTASAMNQMGHHAITISSSQGVTYDEINTILLDRNTNLLSPNNCLVALTR FT SKKGFMFVGNLHLASSDFGTNYMFSQALARRPIDLTSTFPSIFPYLPLLHDPISRRNTR FT LVAGFSPNPTTNNSSLKHGRCTLPPHIPLSHTLDHFIHNPITLGERIDPRLDTDHLPPT FT RLPLHTDLLPTFPSDPTPAAPPKVFATPISNAYHGEYFDSLAAFFLPAHDPSIKEIVLK FT DQTSNQFPFLDREFSLSCQPSSLIAAIHSPAHDSTLLPLSINKRLRFRLSDAPYRITAQ FT DNILGHHLFNSLCRAYRRSPSQTIPFNPYLFAQCISINEYSQLSSKTRATIVANASRSD FT PDWRFTSVRIFAKAQHKVNDGSIFGSWKACQTLALMHDYIILTLGPVKKYQRIFDMKDR FT PPHLYLHCGHTPSQLSAWCNEHFQPTVCTTNDYTAFDQSQHGEAVVLECLKMQRLSIPQ FT NLINLHLHLKTNVHTQFGPLTCMRLTGEPGTYDDNSDYNIAVIYSQYSMQNLPLLVSGD FT DSVIVGTPPTSPNWPAIKDLLHLKFKTEITSYPLFCGYYLSPAGCIRNPLALFAKLMIC FT VDDQSLSEKVLSYLSEFSIGHNIGDQIIQFLPPHLIQYQSACFDFFCRNCTPSQKLLLS FT NDPIPESKLLSLVHKIKWASKAFFSELPQKARDFLVSKSSLPSFPNNPKVSELESELLP FT FSQ" FT CDS 5964..6530 FT /codon_start=1 FT /product="coat protein" FT /note="capsid protein" FT /db_xref="GOA:B6SCF7" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B6SCF7" FT /protein_id="ACI96295.1" FT /translation="MDSSEVVKVKQASIPAPGSILSQPNVEQSPAIVLPFQFEATTFGT FT AETAAQVSLQTADPIAKLTAPYRHAQIVECKAIITPTDLAVSNPLTVNLAWVPANSPAT FT PTQILRIYGGQSFVLGGAISAAKTIEVPLNLDSVNRMLKDSVTYTDTPKLLAYSRAPTN FT PSKIPTASIQISGRIRLSKPMLIAN" FT 3'UTR 6531..6679 XX SQ Sequence 6679 BP; 1529 A; 2709 C; 868 G; 1573 T; 0 other; tagaccctgt ttcagcctct atcttttcct ttcccttgtt tatttctgca ccgaactagg 60 cccttctaaa gcccctagtt cccttttcct agccaccctc taaggccctt cttcaagccc 120 cttagagctt atctcaaaac cagatgagcc atgtcttatc aagctgccct cgaagctctc 180 aactctacat cccaccgaga tgcttccacc aaccccatac tcaactcagt cgtcgaacca 240 cttcgcgact ctctttcctc ctatccctat ctcataccaa aggaggacat acctctcatt 300 ctatctttcg gaatcccagt ttcaggactg ggcaccgatc cacaccccca ccccattcac 360 aaaactatcg aaacccatct tctcttcacc cattggagac acctcgcccg tgtcccttca 420 accgtgatgt tcatgaagcc ctccaaattc cggaagcttc aggccatcaa cccaaatttc 480 tcccaacttc taaactaccg cctaactcca gccgacacct gtcggtaccc agagacgtcg 540 actcagctgc caaccactcc cagctgcttc atgcacgacg ctctcatgta ctaccacccc 600 tcccacattc tggacctctt catgagttgc gaccagctgc aaaccctcta ctgcagcctt 660 attgtcccac cagaatccca cttcaccaac ctttctctct ttccatccat ctatacctat 720 cagattcacg gccgcacact ccattacacc cccgaatctc accacgcagg cagctacgac 780 cagcctctag atgccctctc gtggttaaag attcactcca tctctcatcc atccctctct 840 ctgtccgtaa ctcgcctgga atcttggggc ccttgccact ccattctcat acagcgtggc 900 ctccctccaa gacaccctct tcaccaccct gccaccctct ctcccacctc aaatcttccc 960 ccccctcccc cctctcaccc ctcgagagca ccatcctctc aactccaaag tctgcagctg 1020 gcagcaagcg tgttcgacaa cgaactcgca ccccaaactc tggtgtcatc cttcatgata 1080 cccgattgcc tggaacttcc acaggcaacc ttccttcgcc aacccctccg agatcgtctt 1140 attcccctct cggtctacaa cgccctcttt acttacactc gagccgtccg cactctccgg 1200 acctccgacc ccgccggctt cgtcagaact caatccaaca agcccgaaca caaatgggtc 1260 accccaaaag cctgggacaa cctccagact tttgccctcc taaacgctcc aatacgacca 1320 caagtcgtct acgagttcct tctcaatccc ctccaacgtt tccgcctcca cctccaccaa 1380 cactggcggc gatacctcct cttctcttcc cctctcctat ccacactcat cacccttccc 1440 cttgtcctac cacttccaat cccttttcca atacccctcg tcaaagacct attttaccat 1500 cggtttatcg aggaccaatt gccttcacca tccctccctt ccatccatac aacaaaccat 1560 tcaccatccc acttccttgc ggaaaacaac tccgccggct tctcaatgcc accaaacgcc 1620 ttctccccgc ctcttcaaaa gagaccaccc ccctatcctc attggttcca tccctcttct 1680 tacgggaagg aacctcatgc ttcacactcc cagccctcac ttcaaacccc cccctcccca 1740 ttcccccgct tctccactct ctcctgtccc acatgctggt cctgcgcaac cggctgcttc 1800 ccggattcgc gcctcaaccc gccttgctca gcttctcaaa gagcttcctt accaccaacc 1860 agctgctccc cctccccctc cctctcaaag ccctcttcat catcacccca caactcctat 1920 ccctttacca tcatgaaacc tctcccttgc ccccgcaaca actccacgac aactaccaca 1980 actctctcca tcccgaccag ttccacctcc actggactct cacctccata tccgtttcat 2040 ccccaacccc cttcctcccc ttcgacctcc ctcacccacc tcccccttct ctatcaactc 2100 aacccccccc aactccccct tttccatcgc ctcagccaac tcttattact ccttctgctg 2160 acgcttgaac gccctccaaa ccccccatct tcctctgacc accctcaccc ttcccctccc 2220 atcaccattt cccctccccc tccacatgac acttcaccac ccatcgttgt ggaccccagt 2280 catgtctccc accatcctta ccaccatcta acctccctga gcataccctc tatcctcaac 2340 gatcccacct acgaaaccag aattcgctct ggcttcattt ccattaacaa ctcaccatac 2400 ctccccatca gtttgtttgc accctcgtca acctctgact ccacttccct tctgttcaaa 2460 gtacctccaa ccctcgccca cctccccgtg tactctcctc cagaaccctc accaacccca 2520 atcaccccaa ctcaatccac cctccccact ggagccctca ccttcactcc cgcctctcaa 2580 ccctctgtca ctcccctccc atcctacccc gatcccccac cctctctttc cactcaaccc 2640 ctcctcacag accccacatg cactggtcct gtcaccacct tcgaacttct ttatccagct 2700 gcatatcacc ccgacaccgc aaccttccaa actcgccttc gttgcctccc tccaactcca 2760 ctccccctcc ctcaaaacaa atgcctcctc accgccttca gctctcagac ccactattct 2820 gaagagtcca tttggcacac cctccaaacc ctactacccg actcccttct ctccaacccc 2880 gaaatctcca ctctcggact ttccactgac atcctcacca ccctctgcta ctactatcac 2940 ctccaagccg tcgttctctg cccaaacaga gaacttcgtt ttggaatcac cacctcctca 3000 cagactatca ccctatccta cgagcctggt cctcctcgcc acttctcctc taggccccga 3060 ctcctaggct ccgcccccca ttccaatccc gactcctctc ctcttgtacg tcacgcactc 3120 cgtttcaaac acaaccacac taccttccct tcacctctgc ccacacccac acttcttccc 3180 tccctcacgc caaaaaccat gaaaaacggg ttcgatggcg tcacctccaa actcacccaa 3240 cctcacccaa acggaccctc cctcagagac aaacttttca ccctggactc actcatagac 3300 cattccactg agaagtctct gcctgtcatc cacatctccg ggtttgctgg ctgcggcaaa 3360 acccacccaa tccaacacct actcaaaact cgcccctttc ataatttccg tctgagcaca 3420 ccaaccaacg aacttcgctc ggaatggaaa cgagacatgc gccccactcc tgagaacatc 3480 tggcgcttct ccacctggga aacctccctc ttcaaacatt ccgaaatcct tgtgatcgat 3540 gaatgttata agatgccacg aggctacctg gatttgtcca ttctagccga cccccatctc 3600 aagctcgtca tcttattggg cgatcctctc cagggcgaat accactccaa caacccccac 3660 agtaccaacc accaccttcc ttccgaagtc ctgcgcttcc gcagctatat cgactgttat 3720 tgctggtgga cctacagact tcccatcaaa acagcccgcc tcttccacat ccccacattc 3780 agcaaacaac ctggcatcat caccacctcc cacacccacc ctaaccaatc caaaaatctc 3840 gtcaactcca tccctactgc ttctgccatg aaccaaatgg gtcatcatgc catcaccatc 3900 agcagcagtc aaggcgtcac ctatgacgag attaacacaa tcctcctcga ccgcaacacc 3960 aaccttcttt cacccaacaa ttgtctcgtc gccctcaccc ggtccaagaa aggcttcatg 4020 tttgttggca acctgcatct cgcctccagc gacttcggta ccaactacat gttctcccaa 4080 gccctcgccc gacgacccat tgacctcacg tctaccttcc catccatctt cccttacctt 4140 ccccttctcc acgaccccat ctcccgtcgc aacacccgcc ttgttgctgg tttctcaccc 4200 aaccccacca ccaacaatag cagcctcaaa catggtcgct gcaccctccc accccatatt 4260 cctctgtccc atactctcga tcacttcatc cacaatccca tcacactcgg cgagcggatc 4320 gaccctcggc tagacaccga ccaccttccc ccaaccagat tacccctaca caccgacctt 4380 cttcccacct ttcccagcga ccccacccct gcggccccac ccaaagtttt cgccactccc 4440 atctccaatg cttatcatgg cgaatacttt gattctctcg ccgctttctt ccttccagcc 4500 catgatccat ccatcaagga aatcgtgctc aaggatcaaa cctcaaatca attcccattc 4560 cttgaccgcg aattctccct ttcttgccag ccctcctccc tcattgctgc cattcactcc 4620 cccgcccatg attctaccct ccttccactc tcaatcaata aacggctcag atttcggctc 4680 tctgacgccc cttatcgcat cacggctcag gacaacatac taggccatca cctcttcaat 4740 tccctgtgcc gagcctaccg ccgttctcct tcccaaacaa tcccttttaa cccatacctc 4800 tttgctcagt gcatcagcat caatgaatac tctcagcttt catccaaaac tcgggccacc 4860 attgttgcta atgcttctag atccgacccg gactggcgtt tcacctcagt tcggatcttt 4920 gccaaagccc aacataaagt caatgacggg tcaatttttg gatcctggaa agcatgccaa 4980 actctcgccc tgatgcacga ttacatcatc ctcaccctcg gtcctgtcaa aaaataccaa 5040 aggatctttg acatgaagga ccgaccccca cacctctact tgcactgcgg ccacaccccc 5100 tcccaactct cagcctggtg caatgaacac tttcaaccca ccgtctgcac caccaatgac 5160 tacactgcat tcgaccaatc ccaacatggc gaagcagttg tcctggaatg ccttaaaatg 5220 cagcggctct ccatacccca aaacctcatc aacctccacc tgcatctcaa aaccaacgtg 5280 cacacccagt tcggccccct aacttgcatg agactgacag gagaacccgg cacctatgat 5340 gacaactctg attacaacat tgctgtcatc tactcccagt actccatgca aaaccttccc 5400 cttcttgtct ccggtgatga ctccgtcatt gtcggcactc cacccacctc accaaattgg 5460 cccgccatca aagatctcct acacctcaaa ttcaaaaccg agatcacctc ataccccctg 5520 ttttgtggct actacctctc cccagctggt tgcatacgca atccacttgc cctgttcgcc 5580 aaactaatga tctgcgttga tgaccaatca ttatcggaga aagttctctc atacctgtct 5640 gaattctcca tcggccacaa catcggcgac caaatcatcc agttccttcc accccacctc 5700 attcaatacc aatccgcctg cttcgacttt ttctgccgca actgcacacc ctcccaaaaa 5760 cttctcctgt caaacgaccc catcccagaa tccaagcttc tctctttagt ccacaaaatc 5820 aaatgggcat ctaaagcttt cttttccgaa cttccacaaa aagcccgtga tttcctggtc 5880 agcaaatctt ctctcccttc cttcccaaac aatcccaaag tttctgaact agagtctgaa 5940 ttgcttcctt tctctcaata gaaatggact cttccgaagt tgtcaaagtc aagcaagcct 6000 ccatacctgc cccaggctcc atcctctccc agcccaacgt agaacaatcc ccggccatcg 6060 tcctcccctt ccagtttgaa gccaccacct ttggcaccgc agaaacagcc gctcaggtat 6120 ccctccaaac tgccgacccc attgccaaat tgacagcccc ttaccgacat gctcaaatcg 6180 tcgagtgcaa ggctattatc actccgaccg atcttgccgt gtccaatccc ctcactgtca 6240 atctagcttg ggttcctgcc aactcccccg ccactccaac tcaaatcctc cgcatttatg 6300 gcggtcaatc cttcgtccta ggcggtgcca tctctgccgc caaaaccatc gaagtccctc 6360 tcaacctcga ctccgtcaac cgcatgttga aagacagcgt gacctacacc gacactccca 6420 aactcctcgc ttactcccga gcacctacca acccttccaa aattccaacc gccagtattc 6480 agatcagcgg tcgcattcgg ctctccaagc caatgcttat agccaactaa actcacagac 6540 cccacatgca ctgaagggcg gttaccatgt tccggaatga ctcacgaaag tcacgtaatt 6600 gaggacagtt cctctccctc tagcacacag aggtcaaact gggtgcaact cccccccctt 6660 ccctgggtaa gggaaacca 6679 //