ID EU734832; SV 1; circular; genomic DNA; STD; VRL; 2771 BP. XX AC EU734832; XX DT 23-JUN-2008 (Rel. 96, Created) DT 09-NOV-2010 (Rel. 106, Last updated, Version 3) XX DE TYLCAxV-Sic2-[IT:Sic2/5:04], complete genome. XX KW . XX OS TYLCAxV-Sic2-[IT:Sic2/5:04] OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2771 RX DOI; 10.1016/j.virusres.2009.03.001. RX PUBMED; 19463717. RA Davino S., Napoli C., Dellacroce C., Miozzi L., Noris E., Davino M., RA Accotto G.P.; RT "Two new natural begomovirus recombinants associated with the tomato yellow RT leaf curl disease co-exist with parental viruses in tomato epidemics in RT Italy"; RL Virus Res. 143(1):15-23(2009). XX RN [2] RP 1-2771 RA Davino S., Dellacroce C., Miozzi L., Napoli C., Accotto G.P.; RT ; RL Submitted (20-MAY-2008) to the INSDC. RL Istituto di Virologia Vegetale, Consiglio Nazionale delle Ricerche, Strada RL delle Cacce 73, Torino 10135, Italy XX DR MD5; 762bc8ccea4f952da8fa00ce17d68575. DR EuropePMC; PMC2965765; 21060815. DR EuropePMC; PMC6362282; 30718735. XX FH Key Location/Qualifiers FH FT source 1..2771 FT /organism="TYLCAxV-Sic2-[IT:Sic2/5:04]" FT /host="Solanum lycopersicum" FT /isolate="IT:R-2-5" FT /mol_type="genomic DNA" FT /country="Italy:Sicily, Ragusa" FT /collection_date="2004" FT /db_xref="taxon:604277" FT gene 148..495 FT /gene="V2" FT CDS 148..495 FT /codon_start=1 FT /gene="V2" FT /product="precoat protein" FT /db_xref="GOA:B3VDH7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B3VDH7" FT /protein_id="ACE82194.1" FT /translation="MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDL FT ISVIRARDYAEANRRYTNFNARLEGSSKTELRQPVYQPCCCPHCPRHQASIMDLQAHVS FT KAADVQNVQKP" FT gene 308..1081 FT /gene="V1" FT CDS 308..1081 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:B3VDH8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:B3VDH8" FT /protein_id="ACE82195.1" FT /translation="MPKRTGDILISTPVSKVRRRLNFDSPYTSRAAAPTVQGIKRRSWT FT YRPMYRKPRMYRMYRSPDVPPGCEGLCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHR FT VGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDNE FT PSTATVKNDLRDRYQVMRKFHATVVGGPSGMKEQCLLKRFFKINTHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSISN" FT gene complement(1078..1482) FT /gene="C3" FT CDS complement(1078..1482) FT /codon_start=1 FT /gene="C3" FT /product="REn protein" FT /note="replication enhancer protein" FT /db_xref="GOA:B3VDH9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B3VDH9" FT /protein_id="ACE82196.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQNGRFLRVFRYEVLKYLDSLGVISINN FT VIRAVDHVLYDVLENTINVTEAHDIKYKCY" FT gene complement(1223..1630) FT /gene="C2" FT CDS complement(1223..1630) FT /codon_start=1 FT /gene="C2" FT /product="TrAP protein" FT /note="transcriptional activator protein" FT /db_xref="GOA:B3VDI0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B3VDI0" FT /protein_id="ACE82197.1" FT /translation="MQHSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPAAISNEPRHHFHSDKIQPQ FT HQEGIGDSQMFSQLPNLDDITASEWSFLKSI" FT gene complement(1539..2612) FT /gene="C1" FT CDS complement(1539..2612) FT /codon_start=1 FT /gene="C1" FT /product="Rep protein" FT /note="replication-associated protein" FT /db_xref="GOA:B3VDI1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B3VDI1" FT /protein_id="ACE82198.1" FT /translation="MPRLFKIYAKNYFLTYPNCYLSKEEALSQLKNLETPTNKKYIKVC FT REFHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGEFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYNNDVWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA FT SINQGPTQDSQEETNKA" FT gene complement(2168..2461) FT /gene="C4" FT CDS complement(2168..2461) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B3VDI2" FT /protein_id="ACE82199.1" FT /translation="MGNHISMCLSNSKANTNVKTNGSSTWYPQTGQHISIRTFRQLRAQ FT QMSRPTWRKTENSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAVNPRPSIY" XX SQ Sequence 2771 BP; 761 A; 532 C; 594 G; 884 T; 0 other; taatattacc ggatggccgc gctccccgat aaagaagtgg gtcctacgca gtaatttctg 60 tcgaccaatg aaattccagc ctcaaagctt aaataattgt ttagctttct tataaacttg 120 ctcactaagt tttaaaaata ccacaaaatg tgggatccat tattaaatga atttcctgat 180 tctgtccatg gtctccgatg catgctcgca attaaatatt tgcagctagt tgaagaaacc 240 tacgaaccta atacccttgg tcacgaccta attagggatc tcatctccgt cattcgtgct 300 cgtgactatg ccgaagcgaa ccggcgatat actaatttca acgcccgtct cgaaggttcg 360 tcgaagactg aacttcgaca gcccgtatac cagccgtgct gctgccccca ctgtccaagg 420 catcaagcgt cgatcatgga cttacaggcc catgtatcga aagccgcgga tgtacagaat 480 gtacagaagc cctgatgtac ctccgggttg tgaaggtctc tgtaaagttc agtcctatga 540 gcagcgtgat gacgtcaagc ataccggtgt tgtgcgttgt gttagtgatg ttactagggg 600 ttctggtatt actcatagag ttggtaaacg tttttgtatt aagtcaattt atattttagg 660 gaagatttgg atggatgaaa atataaaaaa acaaaatcat actaaccagg ttatgttttt 720 ccttgttcga gaccgaaggc cttatggaac tagtcctatg gattttggtc aagtttttaa 780 catgtttgat aatgaaccca gtactgctac ggtgaagaac gacttaaggg ataggtatca 840 agtaatgagg aagtttcatg ctacggttgt tggaggtccg tcagggatga aggagcagtg 900 tttgctgaag agatttttta aaattaatac ccatgtagtt tataatcatc aagagcaggc 960 gaagtatgag aatcatactg agaatgcctt gttattgtat atggcttgta ctcatgcttc 1020 taacccagtg tacgctacat tgaaaatacg tatttatttc tatgattcaa tatcaaatta 1080 ataacattta tattttatat catgagcttc tgttacattt attgtgtttt caagtacatc 1140 atacaataca tgatcaactg ctctgattac attgttaatg gaaattacac caagactatc 1200 taaatactta agaacttcat atctaaatac tcttaagaaa cgaccattct gaggctgtaa 1260 tgtcgtccaa attcggaagt tgagaaaaca tttgtgaatc cccaatacct tcctgatgtt 1320 gtggttgaat cttatctgaa tggaaatgat gtcgtggttc attagaaatg gccgctggct 1380 gtgttctgtt atcttgaaat agaggggatt gtttatctcc cagataaaaa cgccattctc 1440 tgcctgagga gcagtgatga gttcccctgt gcgtgaatcc atgattgttg cagttgaggt 1500 ggaggtagta tgagcagcca cagtctaggt ctacacgctt acgccttatt ggtttcttct 1560 tggctatctt gtgttggacc ttgattgata cttgcgaaca gtggctcgta gagggtgacg 1620 aatgttgcat tcttgagagc ccaatttttc aaggatatgt ttttttcttc atctagatat 1680 tccctatatg aggaggtagg tcctggattg cagaggaaga tagtgggaat tcccccttta 1740 atttgaatgg gcttcccgta ctttgtgttg ctttgccagt ccctctgggc ccccatgaat 1800 tccttgaagt gctttaaata atgcgggtct acgtcatcaa tgacgttgta ccacacatcg 1860 ttattgtaca cctttgggct taggtctaga tgtccacata aataattatg tggacccaga 1920 gacctggccc acattgtctt gcccgttctg ctatcaccct caatgacaat acttatgggt 1980 ctccatggcc gcgcagcgga agatacgacg ttctcggcga cccactcttc aagttcatct 2040 ggaacttgat taaaagaaga agaaagaaat ggagaaacat aaacttctaa aggaggacta 2100 aaaatcctat ctaaatttga acttaaatta tgaaattgta aaatatagtc ctttggggcc 2160 ttctctttta atatattgag ggcctcggat ttactgcctg aattgagtgc ttcggcatat 2220 gcgtcgttgg cagattgctg acctcctcta gctgatctgc catcgatttg gaaaactcca 2280 aaatcaatga attctccgtc tttctccacg taggtcttga catctgttga gctcttagct 2340 gcctgaatgt tcggatggaa atgtgctgac ctgtttgggg ataccaggtc gaagaaccgt 2400 tggtttttac attggtattt gccttcgaat tggataagca catggagatg tggttcccca 2460 ttctcgtgga attctctgca aactttgatg tattttttat ttgttggggt ttctaggttt 2520 tttaattggg aaagtgcttc ctctttagag agataacaat tgggatatgt caggaaataa 2580 tttttggcat atattttaaa taaacgaggc atgttgaaat gaatcggtgt ccctcaaagc 2640 tctatggcaa tcggtgtatt ggtgtcttac ttatacctgg acacctaatg gctatatggt 2700 aatttaataa atgtttattg caattcaaaa ttcaaacttc aaaaatcaaa tcattaaagc 2760 ggccatccgt a 2771 //