ID EU734797; SV 1; linear; genomic RNA; STD; VRL; 4550 BP. XX AC EU734797; XX DT 22-JUN-2008 (Rel. 96, Created) DT 10-MAY-2009 (Rel. 100, Last updated, Version 2) XX DE Plum pox virus isolate Ap39 polyprotein gene, partial cds. XX KW . XX OS Plum pox virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4550 RA Ulubas Serce C., Candresse T., Svanella-Dumas L., Krizbai L., Gazel M., RA Caglayan K.; RT "Further characterization of a new recombinant group of Plum pox virus RT isolates, PPV-T, found in orchards in the Ankara province of Turkey"; RL Virus Res. 142(1-2):121-126(2009). XX RN [2] RP 1-4550 RA Ulubas Serce C., Candresse T., Svanella-Dumas L., Krizbai L., Gazel M., RA Caglayan K.; RT ; RL Submitted (21-MAY-2008) to the INSDC. RL Plant Protection Department, Mustafa Kemal University, Faculty of RL Agriculture, Hatay 31034, Turkey XX DR MD5; fbe796c55ab979a557bdfb4cc2d9f53e. XX FH Key Location/Qualifiers FH FT source 1..4550 FT /organism="Plum pox virus" FT /host="apricot" FT /isolate="Ap39" FT /mol_type="genomic RNA" FT /country="Turkey" FT /note="acronym: PPV-T" FT /db_xref="taxon:12211" FT CDS 97..>4550 FT /codon_start=1 FT /product="polyprotein" FT /note="contains P1, HCPro, P3, 6K1, and CI" FT /db_xref="GOA:B3VDF1" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR002540" FT /db_xref="InterPro:IPR011492" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR039560" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/TrEMBL:B3VDF1" FT /protein_id="ACE79182.1" FT /translation="MSTIVFGSFTCHLDAAIHQDNADRLAKAWTRPENRQVSNVHLLCR FT RAAKSLINTYESATASAWKGLEEKLQPMFAKREFSKTVTKRKGLRCFKESSEKFIEKKL FT RKQYQEEHERFQFLNGPDAIVNQISVGKSEASVWVPFPHIIEKPSFATPSMKKKVVFTK FT VRMSEASLQLFMRRVAANAKANGQKVEIIGRKRVVGDYTTKSRLTYFRTHVRHLDGSKP FT RYDLVLDEATKRILQLFANTSGFHHVHKKGEITPGMSGFVVNPMNLSDPMQVYDMDLFI FT VRGKHNSILVDSRCKVSKEQSSEIVHYSDPGKQFWDGFTNSFMQCKLRETDHQCTSDLD FT VKECGYVAALVCQAIIPCGKITCLQCAQKYSYMSQQEIRDRFSTVIEQHEKTVMDNYPQ FT FSHVLAFLKRYRELMRVENQNYEAFKDITHMIGERKEAPFSHLNKINELIIKGGMMSAQ FT DYIEASDHLRELARYQKNRTENIRCGSMNAFRNKISSKAHVNMQLMCDNQLDVNGNFVW FT GQREYHAKRFFRNYFDVIDVSDGYRRHIIRENPRGIRKLAIGNLVMSTNLAALRKQLLG FT ETCTHFEVSKECTSKRGENFVYQCCCVTHEDGTPLESEILSPTKNHLVVGNSGDSKYVD FT LPAAKGSGMYIAKAGYCYINIFLAMLINVNEDEAKSFTKTVRDTLVPKLGTWPSMMDLA FT TACHFLAVLYPETRNAELPRILVDHEAKIFHVVDSFGSLSTGMHVLKANTINQLISFAS FT DTLDSSMKTYLVGGLEVDKCDEFKNVKLLIRSIYKPQVMEQVFKEEPYLLLMSVLSPGV FT LMALFNSGSLEKATQYWITRSHSLAAITSMLSALAAKVSLASTLNAQMSVIDEHAAVLC FT DSVFDGTKPYASYMMAVKTLERMKARTESDHTLNDLGFSVLRQATSHLVEKSYLQELEQ FT AWRDLSWSERFSAILESQRWRKHIPKPFIPKDAADLGGRYDISVRSLLGSQYKRLKDAV FT RRKRDDVVCYTHQSMGKLFCKAIGISTSFLPSTLKIFDMLIIFGLLLSIGATCNSMINE FT HKHLKQVAADREDKKRFKRLQVLYTRLSEKIDCTPTADEFLEYVQGENPDLLKYAEDLI FT GDGQVVVHQSKRDSQANLERVVAFVALVMMLFDSERSDGVYKILNKLKGVMGSIDQTVH FT HQSLDDIEDMLDEKKLTVDFVLQSNEVAPTVPFDSTFEKWWTNQLETGNVIPHYRTEGH FT FLEFTRENAAHIANEVMHGSHQDILIRGAVGSGKSTGLPFHLSKKGHVLLIEPTRPLAE FT NVCKQLRGQPFNVNPTLRMRGMSTFGSTPITVMTSGYALHFLANNPTYLDNYKCIIFDE FT CHVHDASAMAFRCLLSEYSYPGKILKVSATPPGHEVDFKTQKEVKVIVEEALSFQQFIS FT NLGTGCNSDILKHGVNVLVYVASYNEVDTLSKLLTDRSFKVSKVDGRTMKVGNVEIPTS FT GTQAKPHFVVATNIIENGVTLDI" XX SQ Sequence 4550 BP; 1430 A; 918 C; 1033 G; 1169 T; 0 other; tctcaagcta tcaaaatttt tcaaatctca cttgaaagat caaaaatcaa caaagaacat 60 tcctcaattt ttctaccaaa tttactgcaa atcaagatgt caaccattgt atttggctca 120 tttacttgcc acctcgatgc agctatccac caggataatg cagacagatt ggcaaaggcc 180 tggacccgtc cagagaaccg ccaagtcagt aacgtgcatc tactgtgccg aagagcggca 240 aaaagtctca taaatacata tgagagtgca acagctagtg cttggaaagg gctagaggag 300 aagttgcaac ctatgtttgc taagcgagag tttagcaaaa cagtcacaaa gagaaaaggg 360 cttcggtgct tcaaagaaag ctctgagaag tttattgaaa agaagctcag gaaacagtat 420 caagaggagc atgagagatt ccaatttctc aacggtccag atgcaatagt caaccaaatc 480 agtgttggca aaagtgaagc ttcagtatgg gtgccattcc ctcatattat tgagaaacct 540 agctttgcaa caccatcaat gaaaaagaag gtagtgttta ccaaggttag gatgtccgag 600 gcatcactac aactttttat gaggagggtt gctgcaaacg ccaaggcaaa tggtcaaaaa 660 gttgagatca tagggcgtaa gcgtgtagtc ggtgactaca caacgaaaag tcgtctgaca 720 tactttcgca cacatgttcg gcacttggat ggttcaaaac cacgctatga ccttgtgttg 780 gacgaggcaa ctaagaggat tctgcaacta tttgcaaaca caagtggttt ccaccatgtc 840 cacaagaaag gggaaataac accaggaatg agcggatttg tggtaaatcc catgaatcta 900 tcggacccaa tgcaagtata tgacatggat ctttttatag ttcgtggaaa acacaactcc 960 attcttgttg actcacggtg taaggtttcc aaagagcaga gcagtgagat agtccactac 1020 tccgacccag gcaaacaatt ttgggatggc ttcaccaatt cattcatgca gtgcaagcta 1080 cgcgaaactg atcatcagtg cacatctgac ctggacgtga aggagtgtgg ttatgttgca 1140 gcacttgtgt gccaagcgat aatcccttgt ggaaaaatca catgtctgca atgtgctcaa 1200 aaatactctt acatgtcaca acaggaaata cgtgatagat tttctacagt gattgagcag 1260 cacgagaaaa cagtgatgga taactatcca caattttcac atgttctcgc ttttctaaag 1320 aggtatcgtg aattgatgcg cgtggaaaat cagaattatg aagctttcaa ggatatcacg 1380 cacatgatag gcgagcgcaa agaagcacct ttttcccatc tcaataaaat caatgaatta 1440 atcattaagg gtggtatgat gagcgcacaa gactacatag aagcctcgga tcatctgcgc 1500 gaactagcgc gatatcaaaa gaatcgcacg gagaatattc gatgtgggtc tatgaatgct 1560 ttcagaaaca agatatcatc gaaagcacat gtcaacatgc aactcatgtg tgacaatcaa 1620 cttgatgtca acggcaactt cgtctggggt cagagggaat accatgcaaa acgattcttc 1680 aggaattact ttgacgtgat tgatgttagc gatggctaca gacgtcacat cattcgcgag 1740 aaccctagag gcattcgcaa attggccatt ggcaatcttg tcatgtcaac aaatcttgct 1800 gcactgcgca agcaattact tggagagacg tgcacccact ttgaagtctc gaaagagtgt 1860 acgagcaagc gaggggaaaa ttttgtgtat caatgctgct gcgttactca tgaagacgga 1920 acaccattag aatcagagat acttagtcca acgaagaacc acttagttgt tggcaactca 1980 ggtgattcaa agtacgtgga tttacctgcc gcgaaaggaa gtgggatgta catagcaaag 2040 gctggttact gttacattaa catttttctt gctatgttga tcaatgtgaa tgaagatgag 2100 gcaaagagtt tcacaaaaac agtgcgtgat actcttgtgc ccaaacttgg aacatggcca 2160 tcaatgatgg atttggctac agcatgccat tttcttgcag ttctctaccc agaaactcga 2220 aatgctgaac taccacggat acttgttgat cacgaggcaa agatattcca cgtggttgat 2280 tcatttgggt cattatcaac tggtatgcat gtccttaagg caaacacaat caatcaactt 2340 atcagcttcg ctagtgatac attggattca agcatgaaga catatctagt tgggggtctc 2400 gaggttgata agtgtgacga attcaagaat gtcaagctct taattagaag catctataaa 2460 ccacaagtga tggagcaagt gttcaaggag gaaccatatt tattgctcat gagtgtttta 2520 tcacctggcg tcttgatggc attattcaat agtggttcgc tggaaaaagc tacgcaatat 2580 tggataacac gctctcatag tttggcagca atcacatcaa tgctttcggc acttgcagcc 2640 aaagtttcac ttgcaagcac attgaatgca caaatgagtg ttattgacga acatgcagca 2700 gttctgtgtg acagtgtctt tgatggaacc aagccatatg catcctacat gatggcagtg 2760 aagactttag aaagaatgaa ggcacgaact gaatctgatc acaccctgaa tgatttaggg 2820 ttttcagtac tcagacaggc aacatcacac ctggttgaaa aaagttatct ccaggaattg 2880 gagcaggctt ggagagactt aagttggtcg gaaaggttct ctgcaatctt ggaatcgcag 2940 cggtggcgaa aacatatacc aaagcctttc atcccgaaag acgcagcaga tttaggaggc 3000 aggtacgaca tctccgttcg gtcattactt ggcagtcaat acaaacgcct gaaagacgcg 3060 gttcggcgga aaagagacga cgtcgtttgt tacacacacc agtcgatggg gaagctattc 3120 tgcaaagcta tcggaatttc cacaagtttt cttccaagca ctctgaagat atttgacatg 3180 ctcatcatat ttggtctcct gctttcaata ggagccacat gtaattcaat gattaatgag 3240 cacaaacatt taaagcaagt tgctgctgat cgtgaagaca agaaaagatt caagagattg 3300 caggttttgt acacgagact atcagaaaag attgattgca caccaacagc ggatgaattt 3360 cttgaatatg tgcaaggtga aaaccctgat ctattgaaat atgcagagga cttgattgga 3420 gatgggcaag ttgttgtgca tcaaagtaaa agagattcac aagctaatct ggaacgagtc 3480 gtagcatttg tagcccttgt tatgatgctt tttgattcgg aacggagtga tggtgtttac 3540 aaaatcctca ataagcttaa gggcgtcatg ggaagtatcg atcagactgt tcaccatcaa 3600 agtttggacg acattgaaga catgttggac gaaaagaaat tgacagtcga ttttgtcttg 3660 caaagtaatg aagttgcacc aactgtccca tttgactcaa cttttgagaa atggtggact 3720 aatcagcttg aaacaggaaa tgtgatccca cactacagaa ctgaaggaca ctttctagaa 3780 tttacacgag agaatgcagc gcacattgca aatgaagtca tgcatggttc acatcaagac 3840 atcctaatcc gcggagcagt tggctcaggt aagtcaactg ggttgccatt tcatctaagc 3900 aaaaagggtc atgttctgct aattgaaccc actcgaccgt tagctgaaaa tgtgtgcaag 3960 caactacgag ggcaaccatt caatgttaac cccacattac gtatgcgcgg aatgagcacc 4020 tttgggtcaa ctccaattac tgtgatgacg agtggctacg cactgcactt cttggcgaat 4080 aatccaactt atttggataa ctacaagtgc attatcttcg acgagtgtca cgtacacgac 4140 gcatcagcaa tggcatttag atgtcttctc tcggagtatt cgtacccagg gaagatactg 4200 aaagtctcag caacacctcc tggacatgaa gttgatttca agacacaaaa ggaagtgaag 4260 gtcatcgttg aggaagcatt gtcattccag caattcattt ccaatcttgg cactggatgc 4320 aatagtgata tcctgaagca tggcgttaac gtgttggtct atgtggcaag ttacaatgag 4380 gtggacacac taagcaaact gcttacggat agaagcttta aggtttcgaa agttgatggg 4440 cggactatga aagtcggcaa tgtcgagatt ccaacgagtg gcactcaagc caagccacat 4500 ttcgtagtcg caacaaacat tatcgagaat ggagtcacac ttgatattga 4550 //