ID EU727086; SV 2; linear; genomic DNA; STD; VRL; 2757 BP. XX AC EU727086; XX DT 15-JUN-2008 (Rel. 96, Created) DT 17-AUG-2011 (Rel. 109, Last updated, Version 4) XX DE Croton yellow vein mosaic virus segment DNA-A, complete sequence. XX KW . XX OS Croton yellow vein mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2757 RX DOI; 10.1007/s11262-011-0605-9. RX PUBMED; 21479677. RA Snehi S.K., Khan M.S., Raj S.K., Prasad V.; RT "Complete nucleotide sequence of Croton yellow vein mosaic virus and RT DNA-beta associated with yellow vein mosaic disease of Jatropha RT gossypifolia in India"; RL Virus Genes 43(1):93-101(2011). XX RN [2] RP 1-2757 RA Raj S.K., Snehi S.K., Khan M.S.; RT "Croton yellow vein mosaic virus isolate causing yellow vein net in RT Jatropha gossypifolia L. weed in India"; RL Unpublished. XX RN [3] RP 1-2757 RA Raj S.K., Snehi S.K., Khan M.S.; RT ; RL Submitted (19-MAY-2008) to the INSDC. RL Molecular Virology, National Botanical Research Institute, Lucknow, U.P. RL 226001, India XX RN [4] RC Sequence update by submitter RP 1-2757 RA Raj S.K., Snehi S.K., Khan M.S.; RT ; RL Submitted (03-SEP-2008) to the INSDC. RL Molecular Virology, National Botanical Research Institute, Lucknow, U.P. RL 226001, India XX DR MD5; ce671ef7b34aa9dd2774c7fb11cf1f6e. DR EuropePMC; PMC3163225; 21812981. XX CC On Sep 3, 2008 this sequence version replaced gi:189916578. XX FH Key Location/Qualifiers FH FT source 1..2757 FT /organism="Croton yellow vein mosaic virus" FT /segment="DNA-A" FT /host="Jatropha gossypifolia" FT /lab_host="Nicotiana tabacum cv. White Burley" FT /mol_type="genomic DNA" FT /country="India:Lucknow" FT /collected_by="S. K. Snehi" FT /collection_date="Nov-2007" FT /db_xref="taxon:207697" FT CDS 145..501 FT /codon_start=1 FT /product="AV2" FT /note="pre-coat protein" FT /db_xref="GOA:Q8B8N9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q8B8N9" FT /protein_id="ACE62797.2" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYAPDTLGHDLIRDL FT ISVIRARNYVEASSRYNHFHARFEGTPSSQLRQPICEPCCCPHCPRHQSKGMGEQTYVQ FT EAQDVQDVQKPRCP" FT CDS complement(290..613) FT /codon_start=1 FT /product="AC5" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:B2LSD5" FT /protein_id="ACH72916.1" FT /translation="MGQPNTPSNIRKTNNLTHVTNIILRIKRLHLTWAFTSLRDIWASV FT HPVHPGLPVHRSVRPCLCFGDADNGGSSTVHIWAVEVETTAYLQSGRGNDYICWTLRHN FT FWP" FT CDS 305..1075 FT /codon_start=1 FT /product="AV1" FT /note="coat protein" FT /db_xref="GOA:B2LSD6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B2LSD6" FT /protein_id="ACH72915.1" FT /translation="MSKRPADIIISTPALKVRRRLNFDSPYVNRAAAPIVRVTKAKAWA FT NRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR FT VGKRFCVKSLYFVGKIWMAENIKPKNHTNTVILWIVRDRRPAGTPNDFQQVFNVYDNEP FT STATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH FT TENALLLYMACTHASKPVYATLKVRSYFYDSVTN" FT CDS complement(1078..1482) FT /codon_start=1 FT /product="AC3" FT /note="REn protein" FT /db_xref="GOA:B5LEP9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B5LEP9" FT /protein_id="ACH72917.1" FT /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITQHHNRPFLMKEDI FT ITVQIQFNHNLRKALGIHKCSLSFKVWTTSRDSTGMFLRVFKTQVIRYLDRLGVISINL FT VIKSVDHVLYNVLHHVVYVDQSYSIKFNLY" FT CDS complement(1223..1627) FT /codon_start=1 FT /product="AC2" FT /note="TrAP protein" FT /db_xref="GOA:B5LEQ0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B5LEQ0" FT /protein_id="ACH72918.1" FT /translation="MRPSSPSKAHSTQVPIKVQHKIAKKGIRRRRVDLPCGCSYFISIA FT CHNHGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNTTPQQAIPNEGRHHHRSDTVQSQP FT EESVGDTQVLPELQSLDYVTGFDWDVLTSL" FT CDS complement(1530..2615) FT /codon_start=1 FT /product="AC1" FT /note="replication-associated protein" FT /db_xref="GOA:B3GS45" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B3GS45" FT /protein_id="ACE62795.2" FT /translation="MPRINSFCVNAKNIFLTYPKCPIPKEQMLEILKNISCPSNRLFIR FT VAQEKHQDGSMHIHALIQFKGKSQFRNPRHFDVTHPNNSTQFQPNFQGAKSSSDVKSYI FT EKDGDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSTDAALAIIREKLPKDFIFQYH FT NLKCNLDRIFTPPMEVYVSPFSSSSLDQVPEELEEWAAENVVSAAARPIRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPRVYSNDVWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEDKNEALKNWALKNATFITLEGPL FT YSGSNQSAAQDSQEGDQASTS" FT CDS complement(2201..2458) FT /codon_start=1 FT /product="AC4" FT /note="interacts with Rep" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B2ZRU8" FT /protein_id="ACE62796.1" FT /translation="MGLCISTPSSNSKVNPSSETPDISMSLTLITPPNSNQTSRELSPV FT PMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMQQQRP" XX SQ Sequence 2757 BP; 762 A; 557 C; 625 G; 813 T; 0 other; accggatggc cgcgaaaaaa aaaagtgggc cccatggcgc actaactgac aaatacatct 60 ccaccaatga aaagagctcc tcagagctta attgttttgt ggtcccctat ttaaacttcg 120 ccaccaagta gtgcattgcg cactatgtgg gatccattag taaatgagtt tcccgaaacc 180 gttcacgggt ttaggtgtat gttagcagtt aaatatctgc agctagtaga gaagacgtat 240 gccccagaca cattggggca cgatttaatt agggatttaa tttcagtaat tagggccaga 300 aattatgtcg aagcgtccag cagatataat catttccacg cccgctttga aggtacgccg 360 tcgtctcaac ttcgacagcc catatgtgaa ccgtgctgct gcccccattg tccgcgtcac 420 caaagcaaag gcatgggcga acagacctat gtacaggaag cccaggatgt acaggatgta 480 cagaagccca gatgtcccta agggatgtga aggcccatgt aaggtgcagt cttttgatgc 540 gaagaatgat attggtcaca tgggtaaggt tatttgtctt tctgatgtta ctaggggtat 600 tgggctgacc catcgagtag ggaaacgttt ctgtgtgaag tcattgtatt ttgttggcaa 660 aatatggatg gccgagaaca tcaagcccaa gaatcatacg aatactgtta tcctttggat 720 tgttagagat aggcgtcctg caggtacccc aaatgatttc cagcaagtgt tcaatgttta 780 tgataatgag ccctctacgg ctactgtgaa gaacgaccag cgtgatcgtt ttcaggtgtt 840 gaggaggttt caagcaacag tcacaggtgg tcaatatgct gctaaggaac aagctataat 900 taggaaattc tatcgtgtta acaattatgt ggtgtataat caccaggaag ctgggaagta 960 tgaaaatcac actgagaatg ctttgttgtt gtatatggca tgtactcatg cctctaagcc 1020 tgtgtatgct actttgaaag ttaggagtta cttctacgat tctgtaacaa attaacatta 1080 ataaagattg aattttattg aatatgattg gtctacatat acaacgtgat gtagtacatt 1140 atacaataca tgatctacag acttaattac aagattaata gaaattacac ctaatctatc 1200 taaatatcta ataacttgag tcttaaagac tcgtaagaac atcccagtcg aatcccgtga 1260 cgtagtccag actttgaagc tcagggagca cttgtgtatc cccaacgctt tcctcaggtt 1320 gtgattgaac tgtatctgaa cggtgatgat gtcttccttc attaggaatg gcctgttgtg 1380 gtgttgtgtt atcttgaaat acaggggatt ttgaatctcc cagataaaca cgccattctc 1440 tgcttgagct gcagtgatga gttcccctgt gcgtgaatcc atggttgtgg caggctatgg 1500 atatgaagta tgaacaccca cacggtagat caactcgtcg acgcctgatc cccttcttgg 1560 ctatcttgtg ctgcactttg attggaacct gagtagagtg ggccttcgag ggtgatgaag 1620 gtcgcattct ttaaagccca gttctttaat gcttcgttct tatcttcgtc taaatactct 1680 ttatagctcg aatttggccc aggattgcac aagaagattg tcggaatgcc ccctttaatt 1740 tgaacgggct ttccatactt tgtgttactt tgccagtctc tctgggcccc cataaattcc 1800 ttgaagtgct tgagataatg cggatccaca tcatcaatga cgttatacca tacgtcatta 1860 ctatagactc ttggactgag atccaagtga ccgcataaat aattatgtgg tccaagtgat 1920 ctggcccaca tcgtcttccc agttctactg tcaccctcga tcactatact tatgggcctt 1980 ataggccgcg cagcggcact gacgacgttc tcggcagccc actcctcaag ttcttctgga 2040 acttgatcca aagaagaaga agaaaaagga gaaacataaa cctccattgg aggtgtaaaa 2100 atcctatcta aattacattt taaattatga tattgaaaaa taaaatcttt agggagtttt 2160 tccctaatta ttgctaaagc tgcgtcagtt gaacctgcat ttaaggcctc tgctgctgca 2220 tcattagctg tctgttgacc tcctcgagca gatcttccat cgatctgaaa ctgaccccag 2280 tcgatgtaat caccgtcctt ctcgatgtag gacttgacat cggaactgga cttagctccc 2340 tggaagtttg gttggaattg ggtggagtta ttagggtgag tgacatcgaa atgtctgggg 2400 tttctgaact gggatttacc tttgaattgg atgagggcgt ggatatgcat agacccatct 2460 tggtgtttct cttgggctac tctgataaat aatctattag acggacagga aatgttttta 2520 aggatttcga gcatttgctc tttgggtatt gggcatttgg gataagtaag gaagatattt 2580 ttggcattaa cacaaaaaga gttaatacga ggcatattga attggggaca ctcaaaactc 2640 tgaggaatgg gggactcggg ggactcattt atatggtgtc cctaaatggc atttctgtaa 2700 tttggtaaag taattcaaaa ttctcacgct ccaaaaagcg gccatccgta taatatt 2757 //