ID EU717546; SV 1; linear; genomic RNA; STD; VRL; 5779 BP. XX AC EU717546; XX DT 12-JUN-2008 (Rel. 96, Created) DT 25-JUN-2009 (Rel. 101, Last updated, Version 3) XX DE Potato leafroll virus isolate VIRUBRA 1/046, partial sequence. XX KW . XX OS Potato leafroll virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5779 RX DOI; 10.1007/s11262-009-0374-x. RX PUBMED; 19504234. RA Plchova H., Cerovska N., Moravec T., Dedic P.; RT "Short communication: Molecular analysis of Potato leafroll virus isolates RT from the Czech Republic"; RL Virus Genes 39(1):153-155(2009). XX RN [2] RP 1-5779 RA Plchova H., Cerovska N., Moravec T., Dedic P.; RT ; RL Submitted (13-MAY-2008) to the INSDC. RL Virology, Institute of Experimental Botany v.v.i., Czech Academy of RL Sciences, Na Karlovce 1a, Prague 6 160 00, Czech Republic XX DR MD5; 0ceeed838a4677772d612b179136edd8. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF01079; RF_site3. XX FH Key Location/Qualifiers FH FT source 1..5779 FT /organism="Potato leafroll virus" FT /host="potato" FT /isolate="VIRUBRA 1/046" FT /mol_type="genomic RNA" FT /country="Czech Republic" FT /collection_date="2007" FT /db_xref="taxon:12045" FT 5'UTR <1..16 FT CDS 17..760 FT /codon_start=1 FT /product="P0" FT /note="ORF0" FT /db_xref="GOA:Q84835" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:Q84835" FT /protein_id="ACD93701.1" FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLIYGYNH FT EQIYRICRSFLYVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPTI FT VIKLDDPTTAAAYRSELLRVSSSSYIQNAAGLSNGWGHDMEAFVRNAICLLELRERSIP FT QSGLRDLMGNYQHLVRSLLDACKVDHFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA FT LTGFPVYVPSEDYLEGSFLQKELQE" FT CDS 150..2069 FT /codon_start=1 FT /product="P1" FT /note="ORF1; proteinase; polyprotein" FT /db_xref="GOA:B3GQA7" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:B3GQA7" FT /protein_id="ACD93702.1" FT /translation="MNRFTAYAALFFMFSLCSTAKEAGFQHPAFNFRGTSTMSALSGDY FT SAAPTPLYKSWALPSSLNLTTQPLPPLTDRSYYELVQALISKMRLDCQTVGDMTWRHLS FT EMLFASWNSVKEVSLKAASVTLWAIINIWFGLYWTLARLITLFLWTFSIEALCLILLGC FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK FT STRNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE FT STAVKGRVFSDEAVKELEREASEAVKKLARFKSLTGKNWADDYDSDEDYGLEREAATNA FT PAEKTAQTNSAEKTAPSTSAEKTAPTNKPLNGQAAPSAKTNGNSDIPDVATSAPPMDKM FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKTKQNSSPPTSTQSTS FT GAPKREAAPQASGSAGTSRATTTPAPEAKPSGGKNSAKFIPSWRRKQQDSAGQKPDLKP FT NSKA" FT gene 1474..1614 FT /gene="Rap1" FT CDS 1474..1614 FT /codon_start=1 FT /gene="Rap1" FT /product="replication-associated protein 1" FT /db_xref="UniProtKB/TrEMBL:B0FEU0" FT /protein_id="ACD93709.1" FT /translation="MTPMRITVWRERLQQMRPQRKLLKQTQQRRLLHQLQQRKLLQQTS FT L" FT CDS <1487..3337 FT /codon_start=1 FT /product="P2" FT /note="putative RNA polymerase; ORF2; translated by FT ribosomal frameshift" FT /db_xref="GOA:B3GQA9" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:B3GQA9" FT /protein_id="ACD93703.1" FT /translation="GLRSGERGCNKCARRENCSNKLSREDCSINFSRENCSNKQAFKWA FT SGTVRQNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQSLGDRGEDSEQGVSESPAEA FT QTKEARKAWREDQAKQFTSYFNAIYKWGAQEGGCPPGFRKCGYIPRYYHPRTRGETQWG FT QKLCQVHPELAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK FT TVEAYKNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV FT EDHKLLPVLTQLTFDRLQGMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVS FT GAPSVEELCANHKKYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDAL FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH" FT CDS 3535..5688 FT /codon_start=1 FT /transl_except=(pos:4159..4161,aa:OTHER) FT /product="P5" FT /note="ORF5; readthrough protein; translated by amber stop FT codon suppression" FT /db_xref="GOA:B3GQB0" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B3GQB0" FT /protein_id="ACD93706.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPKXVDSGSEPGPSPQP FT TPTPTPQKHERFIAYVGIPMLTIQARENDDQIILGSLGSQRMKYIEDENQNYTNVSSEY FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWN FT VGEADGVKISKLRNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLV FT GPAIQKTARYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSANRVRRPLREGHTYMAS FT PREPEGKPVGNKPRDETPIQTQERQPDQTPSDDVSDAGSVNSGGSTESLRLEFGVNSDS FT TYDATVDGTDWPRIPPPRHPPEPRVSGNSRTVTDFSPKADLLENWDAEHFDPGYSKEDV FT AAATIIAHGSIQDGRSMLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQPLEKG FT TLKEDATDGVSSIGSGSLTGGTLKRKATIEERLLQTLTTEQRLWYENLKKTNPLAATQW FT MFEYQPPPQVDRNIAKQPFQGRK" FT CDS 3535..4161 FT /codon_start=1 FT /product="P3" FT /note="major capsid protein; ORF3" FT /db_xref="GOA:Q84838" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q84838" FT /protein_id="ACD93704.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK" FT CDS 3560..4030 FT /codon_start=1 FT /product="P4" FT /note="putative movement protein; ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q77E88" FT /protein_id="ACD93705.1" FT /translation="MSMVVYNNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDAEEEA FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS FT QASYFSSSARPLPPPPVPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIKRG" FT CDS 5093..5281 FT /codon_start=1 FT /product="P6" FT /note="ORF6" FT /db_xref="UniProtKB/TrEMBL:B3GQB3" FT /protein_id="ACD93707.1" FT /translation="MLQSMVQTGPEFLHQGTHLNLEFPAIQELLLTFLRKPIYWRIGMP FT NTSTLDIPKKMSLLLLL" FT CDS 5311..5688 FT /codon_start=1 FT /product="P7" FT /note="ORF7" FT /db_xref="GOA:B3GQB4" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B3GQB4" FT /protein_id="ACD93708.1" FT /translation="MLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQPLEKGTL FT KEDATDGVSSIGSGSLTGGTLKRKATIEERLLQTLTTEQRLWYENLKKTNPLAATQWMF FT EYQPPPQVDRNIAKQPFQGRK" FT 3'UTR 5689..>5779 XX SQ Sequence 5779 BP; 1608 A; 1470 C; 1408 G; 1293 T; 0 other; gcaaacgtta tagcatatga ttgtattgac ccagtctgga accttgcttt ttgaccaaag 60 atttaaactc tcaaagtttc tcttcgttgt cattgcaaca ggctttcctc ttctcctgca 120 gcaagcgagc ttaatttacg gctacaatca tgaacagatt taccgcatat gccgctcttt 180 tctttatgtt ctccctttgc tcaactgcaa aagaggcagg atttcaacat ccggccttca 240 acttccgagg cacctccact atgagtgcct tgagtgggga ttactctgcg gcacccaccc 300 cgctatacaa atcgtgggcc ctaccatcgt cattaaactt gacgacccaa ccactgccgc 360 cgcttacaga tcggagctac tacgagttag ttcaagctct tatatccaaa atgcggctgg 420 attgtcaaac ggttggggac atgacatgga ggcatttgtc agaaatgcta tttgcctcct 480 ggaactccgt gaaagaagta tccctcaaag cggcctccgt gaccttatgg gcaattatca 540 acatttggtt cggtctttat tggacgcttg caaggttgat cactttgttc ctctggactt 600 tcagcataga agccttatgc ttaattttgc tcggttgtat aaccagcttg atctacaagg 660 gcgcgctaag tctttcagag cacttaccgg ttttcctgtt tatgtcccct ctgaagatta 720 tttggagggc agctttctcc aaaaggaatt acaagaatga gagggctgtg gaaggataca 780 aagggttttc ggtcccacag aaaccgccaa agtctgccgt aatcgaacta caacatgaaa 840 acggcagcca tctcgggtac gcgaactgca ttcgcttgta cagtggagag aacgccttgg 900 tgacagctga acactgtctg gaaggcgctt tcgcaacgtc gttgaaaact ggaaacagga 960 ttccgatgtc gactttcttt cccattttca aaagtacccg taatgatatc tccatactag 1020 taggtccacc caactgggaa ggtctactat cagtcaaagg agctcatttc attacagctg 1080 acaaaatcgg caaaggtcct gcctctttct acactcttga gaaaggggag tggatgtgcc 1140 atagtgccac catagatgga gcccatcacc agttcgtgtc tgttttatgc aacactggac 1200 ccggatattc cggaacaggg ttttggtctt caaagaatct gcttggtgtg cttaaaggct 1260 tcccactgga agaggagtgt aactacaatg ttatgtctgt tataccctcg atcccaggaa 1320 tcacttcccc aaattatgtg tttgagtcga ccgccgtaaa aggccgcgtc ttctcggatg 1380 aagctgtgaa agagctggag cgggaagcat ccgaagccgt caagaagctt gccagattta 1440 aatcacttac cggcaagaac tgggctgatg attatgactc cgatgaggat tacggtctgg 1500 agagagaggc tgcaacaaat gcgcccgcag agaaaactgc tcaaacaaac tcagcagaga 1560 agactgctcc atcaacttca gcagagaaaa ctgctccaac aaacaagcct ttaaatgggc 1620 aagcggcacc gtccgccaaa acaaacggca actccgacat ccccgacgtc gctacaagcg 1680 caccaccaat ggacaaaatg gtcgaacaga tcatcacagc tatggtgggg agaatcaatc 1740 tctcggagat agaggagaag atagtgagca gggtgtctca gaaagccctg cagaagccca 1800 aacaaaagaa gcgcggaagg cgtggaggga agaccaagca aaacagttca cctcctactt 1860 caacgcaatc tacaagtggg gcgcccaaga gggaggctgc cccccaggct tcaggaagtg 1920 cgggtacatc ccgcgctact accacccccg caccagaggc gaaacccagt gggggcaaaa 1980 actctgccaa gttcatcccg agctggcgga gaaaacagca ggattcggct ggccaaaagc 2040 cggatctgaa gccgaactcc aaagcctgaa tctacaggct gccaggtggc tccaacgcgc 2100 ggagtcggcc actatccctg gcgcagaagc aagaaagcgc gtgattgaga aaacagtgga 2160 ggcatacaaa aattgtgtaa ctaacgcccc actgtgctcc cttaaatcca aactggattg 2220 ggctggcttt caacaagata tccgtgaagc agtccagtcc cttgagctag acgctggtgt 2280 aggcattccc tatatcgcgt atggcctccc cacacaccga ggatgggttg aggaccataa 2340 gcttctccca gtgctcactc agctgacctt tgaccgacta caggggatgt cagaggccag 2400 ctttgaggat atgagcgcag aagagctggt tcaagaaggg ctctgtgatc ctatcagact 2460 atttgtcaaa ggagagcccc acaaacagag caaactcgat gaaggccgct accgcctcat 2520 catgtctgtt tccttggtgg atcaactggt agcccgggtt ctgttccaaa atcagaacaa 2580 aagggaaatt tccctgtgga ggtctgtgcc ttccaaaccc ggttttggcc tttcaactga 2640 cactcaaact gctgaattct tggagtgtct tcaaaaggtg tctggagcgc catctgtgga 2700 agaattgtgt gcaaatcaca agaagtacac gcgcccaacc gactgttccg gtttcgactg 2760 gtcagtcgcg tattggatgc tggaggatga tatggaggtg agaaatcgcc tgacatttaa 2820 taacacccag ctcaccaagc gccttcgggc tgcctggttg aagtgcatag gaaactccgt 2880 cctgtgcctg tccgatggca ctttacttgc ccaaactgtt cccggtgtgc aaaagagcgg 2940 aagttacaac acaagttcct ccaactctag aatccgggtt atggctgcct atcactgtgg 3000 cgccgactgg gcaatggcca tgggggacga tgctctcgaa gcccccaact ccgacctgga 3060 ggagtataaa acactaggtt ttaaagtcga ggtaggtcga gaactcgaat tctgttcaca 3120 catcttcaga aatccgaccc tcgccgttcc ggtcaacacc aacaaaatgc tttacaagtt 3180 gatccatggt tataatccgg aatgtggcaa tccagaagtg attcaaaact atctggctgc 3240 agtattctct gtgctgcagg aactccgaca cgatcgtgag ctcgttgcca agctccacca 3300 gtggttggtt ccgagtgcca ccacaaaaga acactgaagg agctcactaa aactagccaa 3360 gcatacgcga gttgcaagca ttggaagttc aagcctcgtt acatcaaccg gacaaaatag 3420 attataaatt cttagcggga tttgctttag gattctcatc cgcaatccca ttttcagtag 3480 ccggtttata tttagtttac ctaaagattt cctcccacgt gcgatcaatt gttaatgagt 3540 acggtcgtgg ttaaaggaaa tgtcaatggt ggtgtacaac aaccaagaag gcgaagaagg 3600 caatcccttc gcaggcgcgc taacagagtt cagccagtgg ttatggtcac ggcccctggg 3660 caacccaggc gccgaagacg cagaagagga ggcaatcgcc gctcaagaag aactggagtt 3720 ccccgaggac gaggctcaag cgagacattc gtgtttacaa aggacaacct catgggcaac 3780 tcccaaggaa gtttcacctt cgggccgagt ctatcagact gtccggcatt caaggatgga 3840 atactcaagg cctaccatga gtataagatc acaagcatct tacttcagtt cgtcagcgag 3900 gcctcttcca cctcctccgg ttccatcgct tatgagttgg acccccattg caaagtatca 3960 tccctccagt cctacgtcaa caagttccaa attacgaagg gcggcgccaa aacttatcaa 4020 gcgcggatga taaacggggt agaatggcac gattcttctg aggatcagtg ccggatactg 4080 tggaagggaa atggaaaatc ttcagatacc gcaggatcct tcagagtcac catcagggtg 4140 gctttgcaaa accccaaata ggtagactcc ggatcagagc ctggtccaag cccacaacca 4200 acacccactc caactcccca gaagcacgag cgatttattg cttacgttgg catacctatg 4260 ctaaccattc aggccaggga gaacgacgac caaatcatat tgggttcctt agggagccaa 4320 aggatgaaat atatagaaga cgagaaccag aactatacaa atgttagttc tgagtattac 4380 tctcaatcga gcatgcaagc cgtccctatg tattacttca atgtcccgaa agggcaatgg 4440 tcagtcgaca tcagctgcga agggtatcaa cccactagca gcacctcgga tccaaaccgg 4500 ggtaggagtg acgggatgat cgcgtattca aacgcggatt ccgattattg gaatgttggt 4560 gaagcggatg gtgtaaaaat ttcgaagcta cgcaacgata acacctaccg ccaaggtcac 4620 ccagaacttg aaattaactc gtgtcatttt cgcgagggcc aactccttga acgggacgct 4680 acaattagct tccacgttga agcgcctact gatgggcgat tctttctcgt tggtcccgct 4740 atccagaaaa ccgcaaggta taactatact atctcatacg gtgactggac ggaccgagac 4800 atggaactgg ggctgatcac tgtggtgctt gatgaacatt tagaaggcac tggttcggct 4860 aacagagtgc ggcggcccct acgggagggc cacacctata tggcctcgcc gcgcgaaccg 4920 gaaggaaaac cggttggaaa taaaccaagg gacgaaaccc cgatacaaac gcaggaaaga 4980 caacctgatc aaactccgtc tgacgacgta tccgatgctg gttcggtaaa cagcggcggc 5040 tcaactgagt cgctgcgatt ggagttcggg gtaaactcag atagtaccta cgatgctaca 5100 gtcgatggta cagactggcc cagaattcct ccaccaaggc acccacctga acctagagtt 5160 tccggcaatt caagaactgt tactgacttt tctccgaaag ccgatctatt ggagaattgg 5220 gatgccgaac acttcgaccc tggatattcc aaagaagatg tcgctgctgc tactattata 5280 gcgcacggca gtattcaaga tgggcgaagt atgttggaga agagagagga aaatgtcaag 5340 aacaaaacct cctcctggaa gcccccgtta cctaaagcgg tgagcccagc catagccaaa 5400 ttgcgctcga ttcgcaaatc ccaacccctc gagaaaggga cccttaagga agacgccact 5460 gatggtgtct catctattgg cagtggttct ctaacaggtg gcacgcttaa gaggaaggca 5520 actattgaag agcgtttact gcagacctta acaactgaac aaaggctgtg gtacgagaat 5580 ttgaagaaaa ctaaccctct agctgctacc caatggatgt ttgaatatca gccacctccc 5640 caagtagata gaaacatagc taaacagcca ttccaaggga ggaaatgagt cgactcacga 5700 cttaaaactg agtgtccgcc ggacattaag cggaacgaaa gccgaaaggt gattaggctc 5760 tcaacgcctg ctagagacc 5779 //