ID EU717545; SV 1; linear; genomic RNA; STD; VRL; 5801 BP. XX AC EU717545; XX DT 12-JUN-2008 (Rel. 96, Created) DT 25-JUN-2009 (Rel. 101, Last updated, Version 3) XX DE Potato leafroll virus isolate VIRUBRA 1/045, partial sequence. XX KW . XX OS Potato leafroll virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5801 RX DOI; 10.1007/s11262-009-0374-x. RX PUBMED; 19504234. RA Plchova H., Cerovska N., Moravec T., Dedic P.; RT "Short communication: Molecular analysis of Potato leafroll virus isolates RT from the Czech Republic"; RL Virus Genes 39(1):153-155(2009). XX RN [2] RP 1-5801 RA Plchova H., Cerovska N., Moravec T., Dedic P.; RT ; RL Submitted (13-MAY-2008) to the INSDC. RL Virology, Institute of Experimental Botany v.v.i., Czech Academy of RL Sciences, Na Karlovce 1a, Prague 6 160 00, Czech Republic XX DR MD5; 024a5418af36d5073156ae57166721e8. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF01079; RF_site3. XX FH Key Location/Qualifiers FH FT source 1..5801 FT /organism="Potato leafroll virus" FT /host="potato" FT /isolate="VIRUBRA 1/045" FT /mol_type="genomic RNA" FT /country="Czech Republic" FT /collection_date="2007" FT /db_xref="taxon:12045" FT 5'UTR <1..32 FT CDS 33..776 FT /codon_start=1 FT /product="P0" FT /note="ORF0" FT /db_xref="GOA:Q5URV4" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:Q5URV4" FT /protein_id="ACD93692.1" FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLLYGYNH FT EQIYRICRSFLYVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPSI FT IVELDNPTTAAAYRSELLRISSSSYVKNSVGFSNGWGHDMEAFVRNAICLLELRERSIP FT QSGLRNLMGNYQHLVRSLLDACTVDYFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA FT LTGFPVYVPSEDYLEGSFLQKELQE" FT CDS 166..2085 FT /codon_start=1 FT /product="P1" FT /note="ORF1; proteinase; polyprotein" FT /db_xref="GOA:B3GQ98" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:B3GQ98" FT /protein_id="ACD93693.1" FT /translation="MNRFTAFAALFFMFSLCSTAKEAGFQHPAFNFRGTSIMSVSSGDY FT SAAPIPQYKSWALPSLSNSTTPPPPLLTDRSYYELVQALMSKIRLDFQMVGDMTWRHLS FT EMLFASWNSVREVSLRAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK FT STRNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE FT STAVKGRVFSDEAVKELEREASEAVKKLARFKSLTGKNWADDYDSDEDYGLEREAATNA FT PAEKTAQTNSAEKTAPSTSAEKTAPTNKPLNGQAAPSAKTNGNSDIPDAATSAPPMDKM FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKTKQNSSPPTSTQSTS FT GAPKKEAAPQASGSAGTSRATTTPAPEAKPSGGKNSAKFIPSWRRKQQDSAGQKPDLKL FT NSKA" FT gene 1490..1630 FT /gene="Rap1" FT CDS 1490..1630 FT /codon_start=1 FT /gene="Rap1" FT /product="replication-associated protein 1" FT /db_xref="UniProtKB/TrEMBL:B0FEU0" FT /protein_id="ACD93700.1" FT /translation="MTPMRITVWRERLQQMRPQRKLLKQTQQRRLLHQLQQRKLLQQTS FT L" FT CDS <1503..3353 FT /codon_start=1 FT /product="P2" FT /note="putative RNA polymerase; ORF2; translated by FT ribosomal frameshift" FT /db_xref="GOA:B3GQA0" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:B3GQA0" FT /protein_id="ACD93694.1" FT /translation="GLRSGERGCNKCARRENCSNKLSREDCSINFSRENCSNKQAFKWA FT SGTVRQNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQSLGDRGEDSEQGVSESPAEA FT QTKEARKAWREDQAKQFTSYFNAIYKWGAQEGGCPPGFRKCGHIPRYYHPRTRGETQWG FT QKLCQVHPELAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK FT TVEAYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV FT EDHKLLPVLTQLTFDRLQGMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVS FT GAPSVEELCANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDAL FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH" FT CDS 3551..5704 FT /codon_start=1 FT /transl_except=(pos:4175..4177,aa:OTHER) FT /product="P5" FT /note="ORF5; readthrough protein; translated by amber stop FT codon suppression" FT /db_xref="GOA:B3GQA1" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B3GQA1" FT /protein_id="ACD93697.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPKXVDSGSEPGPSPQP FT TPTPTPQKHERFIAYVGIPMLTIQARENDDQIILGSLGNQRMKYIEDENQNYTNISSEY FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWN FT VGEADGVKISKLRNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLV FT GPAIQKTAKYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSANRVRRPPREGHTYMAS FT PREPEGKPVGNKPRDETPIQTQERQPDQTPSDDVSDAGSVNSGGSTESLRLEFGVNSDS FT TNDATVDGTHWPRIPPPRHPPEPRVSGNSRTVTDFSPKADLLENWDAEHFDPGYSKEDV FT AAATIIAHGSIQDGRSMLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQPLEGG FT TLKKDATDGVSSIGSGSLTGGTLKRKATIEERLLQTLTTEQRLWYENLKKTNPLAATQW FT LFEYQPPPQVDRNIAEKPFQGRK" FT CDS 3551..4177 FT /codon_start=1 FT /product="P3" FT /note="major capsid protein; ORF3" FT /db_xref="GOA:Q84838" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q84838" FT /protein_id="ACD93695.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK" FT CDS 3576..4046 FT /codon_start=1 FT /product="P4" FT /note="putative movement protein; ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B3GQA3" FT /protein_id="ACD93696.1" FT /translation="MSMVVYNNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDAEEEA FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS FT QASYFSSSARPLPPPPAPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIKRG" FT CDS 5109..5297 FT /codon_start=1 FT /product="P6" FT /note="ORF6" FT /db_xref="UniProtKB/TrEMBL:B3GQA4" FT /protein_id="ACD93698.1" FT /translation="MLQSMVHTGPEFLHQGTHLNLEFPAIQELLLTFLRKPIYWRIGMP FT NTSTLVIPKKMSLLLLL" FT CDS 5327..5704 FT /codon_start=1 FT /product="P7" FT /note="ORF7" FT /db_xref="GOA:B3GQA5" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B3GQA5" FT /protein_id="ACD93699.1" FT /translation="MLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQPLEGGTL FT KKDATDGVSSIGSGSLTGGTLKRKATIEERLLQTLTTEQRLWYENLKKTNPLAATQWLF FT EYQPPPQVDRNIAEKPFQGRK" FT 3'UTR 5705..>5801 XX SQ Sequence 5801 BP; 1609 A; 1470 C; 1407 G; 1315 T; 0 other; aaactttaca ctcattgcga acgttatagc atatgattgt attgactcag tctggaacct 60 tgcttttcga ccaaagattt aaactttcaa agtttctttt tgttgtcatt gcaacaggtt 120 ttcctcttct cctgcaacaa gcgagcttac tttacggtta caatcatgaa cagatttacc 180 gcatttgccg ctcttttctt tatgttctcc ctttgctcaa ctgcaaaaga ggcaggattt 240 caacatccgg ccttcaactt ccgaggcacc tccattatga gtgtctcgag tggggattac 300 tctgcggcac ccatcccgca atacaaatcg tgggcccttc catcattgtc gaactcgaca 360 accccaccac cgccgctgct tacagatcgg agctactacg aattagttca agctcttatg 420 tcaaaaattc ggttggattt tcaaatggtt ggggacatga catggaggca tttgtcagaa 480 atgctatttg cctcctggaa ctccgtgaga gaagtatccc tcagagcggc ctccgtaacc 540 ttatgggcaa ttatcagcat ttggttcggt ctctattgga cgcttgcacg gttgattact 600 ttgttcctct ggactttcag catagaagcc ttatgcttaa ttttgctcgg ttgtataacc 660 agcttgattt acaagggcgc gctaagtctt tcagagcact taccggtttt cctgtttatg 720 tcccctctga agattatttg gagggcagct ttctccaaaa ggaattacaa gaatgagagg 780 gctgtggaag gatacaaagg gttttcggtc ccacagaaac cgccaaagtc tgccgtaatt 840 gaactacaac atgaaaacgg cagccatctc gggtacgcga actgcattcg cttgtacagt 900 ggagagaacg ccttggtgac agctgaacac tgtctagagg gcgctttcgc aacgtcgttg 960 aaaactggaa acaggattcc gatgtcgact ttctttccca ttttcaaaag tacccgtaat 1020 gatatctcca tactagtagg tccacccaac tgggaaggtc tactctcagt caaaggagct 1080 catttcatta cagctgacaa aatcggcaaa ggtcctgcct ctttctacac tcttgagaaa 1140 ggggagtgga tgtgccatag tgccaccata gatggagccc atcaccagtt cgtgtctgtt 1200 ttatgcaaca ctggacccgg atattccgga acagggtttt ggtcttcaaa gaatctgctt 1260 ggtgtgctta aaggcttccc actggaagag gagtgtaact acaatgttat gtctgttata 1320 ccctcgatcc caggaatcac ttccccaaat tatgtgtttg agtcgaccgc cgtaaaaggc 1380 cgcgtcttct cggatgaagc tgtgaaagag ctagagcggg aagcatccga agccgtcaag 1440 aagcttgcca gatttaaatc acttaccggc aagaactggg ctgatgatta tgactccgat 1500 gaggattacg gtctggagag agaggctgca acaaatgcgc ccgcagagaa aactgctcaa 1560 acaaactcag cagagaagac tgctccatca acttcagcag agaaaactgc tccaacaaac 1620 aagcctttaa atgggcaagc ggcaccgtcc gccaaaacaa acggcaactc cgacatcccc 1680 gacgccgcta caagcgcacc accaatggac aaaatggtcg aacagatcat cacagctatg 1740 gtggggagaa tcaatctctc ggagatagag gagaagatag tgagcagggt gtctcagaaa 1800 gccctgcaga agcccaaaca aaagaagcgc ggaaggcgtg gagggaagac caagcaaaac 1860 agttcacctc ctacttcaac gcaatctaca agtggggcgc ccaagaagga ggctgccccc 1920 caggcttcag gaagtgcggg cacatcccgc gctactacca cccccgcacc agaggcgaaa 1980 cccagtgggg gcaaaaactc tgccaagttc atcccgagct ggcggagaaa acagcaggat 2040 tcggctggcc aaaagccgga tctgaagctg aactccaaag cctgaatcta caggctgcca 2100 ggtggctcca acgcgcggag tcggccacta tccctggcgc agaagcaaga aagcgcgtga 2160 ttgagaaaac agtggaggca tacagaaatt gtgtaactaa cgccccactg tgctccctta 2220 aatccaaact ggattgggct ggctttcaac aagatatccg tgaagcagtc caatcccttg 2280 agctagacgc tggtgtaggc attccctata tcgcgtatgg cctccccacg caccgaggat 2340 gggttgagga ccataagctt ctcccagtgc ttactcagct gacctttgac cgactacagg 2400 ggatgtcaga ggccagcttt gaggatatga gcgcagaaga gctggttcaa gaagggctct 2460 gtgatcctat cagactattt gtcaaaggag agccccacaa acagagcaaa ctcgatgaag 2520 gccgctaccg cctcatcatg tctgtttccc tggtggatca actggtagcc cgggttctgt 2580 tccaaaatca gaacaaaagg gaaatttccc tgtggaggtc tgtgccttcc aaacccggtt 2640 ttggcctttc aactgacact caaactgctg aattcttgga gtgtcttcaa aaggtgtctg 2700 gagcgccatc tgtggaagaa ttgtgtgcaa atcacaagga gtacacgcgc ccaaccgact 2760 gttccggttt cgactggtca gtcgcgtatt ggatgctgga ggatgatatg gaggtgagaa 2820 atcgcctgac atttaataac acccagctca ccaagcgcct tcgggccgcc tggttgaagt 2880 gcataggaaa ctccgtccta tgcctgtccg atggcacttt acttgcccaa actgttcccg 2940 gtgtgcaaaa gagcggaagt tacaatacaa gttcctccaa ctctagaatt cgggttatgg 3000 ctgcctatca ctgtggcgcc gactgggcaa tggccatggg ggacgatgct ctcgaagccc 3060 ccaactccga cctggaggag tataaaacac taggtttcaa agtcgaggta ggtcgagaac 3120 tcgaattctg ttcacacatc ttcagaaatc cgaccctcgc cgttccggtc aacaccaaca 3180 aaatgcttta caagttgatc catggttata acccggaatg tggcaatcca gaagtgattc 3240 aaaactatct ggctgcagta ttctctgtgc tgcaggaact ccgacacgat cgtgagctcg 3300 ttgccaagct ccaccagtgg ttggttccga gtgccaccac aaaagaacac tgaaggagct 3360 cactaaaact agccaagcat acgcgagttg caagcattgg aagttcaagc ctcgttacat 3420 caaccggaca aaatagatta taaattctta gcgggatttg ctttaggatt ctcatccgca 3480 atcccatttt cagtagccgg tttatatttt gtttacctaa agatttcctc ccacgtgcga 3540 tcaattgtta atgagtacgg tcgtggttaa aggaaatgtc aatggtggtg tacaacaacc 3600 aagaaggcga agaaggcaat cccttcgcag gcgcgctaac agagttcagc cagtggttat 3660 ggtcacggcc cctgggcaac ccaggcgccg aagacgcaga agaggaggca atcgccgctc 3720 aagaagaact ggagttcccc gaggacgagg ctcaagcgag acattcgtgt ttacaaagga 3780 caacctcatg ggcaactccc aaggaagttt caccttcggg ccgagtctat cagactgtcc 3840 ggcattcaag gatggaatac tcaaggccta ccatgagtat aagatcacaa gcatcttact 3900 tcagttcgtc agcgaggcct cttccacctc ctccggctcc atcgcttatg agttggaccc 3960 ccattgcaaa gtatcatccc tccagtccta cgtcaacaag ttccaaatta cgaagggcgg 4020 cgccaaaact tatcaagcgc ggatgataaa cggggtagaa tggcacgatt cttctgagga 4080 tcagtgccgg atactgtgga agggaaatgg aaaatcttca gataccgcag gatccttcag 4140 agtcaccatc agggtggctt tgcaaaaccc caaataggta gactccggat cagagcctgg 4200 tccaagccca caaccaacac ccactccaac tccccagaag cacgagcgtt ttattgctta 4260 cgttggcata cctatgctaa ccattcaggc cagggagaac gacgaccaaa tcatattggg 4320 ttccttaggg aaccaaagga tgaaatatat agaggacgag aaccagaact atacaaatat 4380 tagttctgag tattactctc aatcgagcat gcaagccgtc cctatgtatt actttaatgt 4440 cccgaaaggg caatggtcgg tcgacatcag ctgcgaaggg tatcaaccca ctagcagcac 4500 ctcggatcca aaccggggta ggagtgacgg gatgatcgcg tattcaaacg cggattccga 4560 ttattggaat gttggtgaag cggatggtgt caaaatttcg aagctacgca acgataacac 4620 ctaccgccaa ggtcacccag aacttgaaat taactcgtgt cattttcgcg agggccaact 4680 ccttgaacgg gacgctacaa ttagcttcca cgttgaagcg cctactgatg ggcgattctt 4740 tctcgttggt cccgctatcc agaaaaccgc aaagtataac tatactatct catacggtga 4800 ctggacggac cgagacatgg aattggggtt gatcactgtg gtgcttgatg aacatttaga 4860 aggcactggt tcggctaaca gagtgcggcg gcccccacgg gagggccaca cctatatggc 4920 ctcgccgcgc gaaccggaag gaaaaccggt tggaaataaa ccaagggacg aaaccccgat 4980 acaaacgcag gaaagacaac ctgatcaaac tccgtctgac gacgtatccg atgctggttc 5040 ggtaaacagc ggcggctcaa ctgagtcgct gcgattggag ttcggggtaa actcagatag 5100 taccaacgat gctacagtcg atggtacaca ctggcccaga attcctccac caaggcaccc 5160 acctgaacct agagtttccg gcaattcaag aactgttact gacttttctc cgaaagccga 5220 tctattggag aattgggatg ccgaacactt cgaccctggt tattccaaag aagatgtcgc 5280 tgctgctact attatagcgc acggcagtat tcaagatggg cgaagtatgt tggagaagag 5340 agaggaaaat gtcaagaaca aaacctcctc ctggaagccc ccgttaccta aagcggtgag 5400 cccagccata gccaaattgc gctcaattcg caaatcccaa cccctcgaag gagggaccct 5460 taagaaagac gccactgatg gtgtctcatc tattggcagt ggttctctaa caggtggcac 5520 gcttaagagg aaggcaacta ttgaagagcg tttactgcag accttaacaa ctgaacaaag 5580 gctgtggtac gagaatttga agaaaactaa ccctctagct gctacccaat ggctgtttga 5640 atatcagcca cctccccaag tagatagaaa catagctgaa aagccatttc aagggaggaa 5700 atgagtcgac tcacgactta aaactgagtg tccgccggac attaagcgga acgaaagccg 5760 aaaggtgatt aggctctcaa cgcctgctag agaccgtcga a 5801 //