Dbfetch
ID EU708317; SV 1; circular; genomic DNA; STD; VRL; 7498 BP. XX AC EU708317; XX DT 22-JUN-2008 (Rel. 96, Created) DT 01-JUL-2009 (Rel. 101, Last updated, Version 3) XX DE Citrus yellow mosaic virus, complete genome. XX KW . XX OS Citrus yellow mosaic virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7498 RA Baranwal V.K., Prasanna Kumar B.K., Singh J., Ahlawat Y.S.; RT "Genome characterization and variability analysis in Citrus yellow mosaic RT virus infecting acid lime isolate from Andhra Pardesh, India"; RL Unpublished. XX RN [2] RP 1-7498 RA Baranwal V.K., Prasanna Kumar B.K., Singh J., Ahlawat Y.S.; RT ; RL Submitted (08-MAY-2008) to the INSDC. RL Plant Virology Unit, Division of Plant Pathology, Indian Agriculture RL Research Institute, Pusa Road, New Delhi, New Delhi, Delhi 110012, India XX DR MD5; e52963a2ce22e89d632549654651c2d4. XX FH Key Location/Qualifiers FH FT source 1..7498 FT /organism="Citrus yellow mosaic virus" FT /host="acid lime" FT /mol_type="genomic DNA" FT /country="India:Andhra Pardesh" FT /db_xref="taxon:174178" FT CDS 230..661 FT /codon_start=1 FT /product="unknown" FT /note="hypothetical protein; ORF I" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:B3V798" FT /protein_id="ACE76862.1" FT /translation="MSRIWEEAIQRWYETSHTANLEYLDLASKPKVSNSEISHNLAVVY FT DRLSLFSRVSIKNFKSIQETLEKQDLRIQKLESSLKTLTSEFIAHKPLSKTEVKALVTE FT IAKQPKLIEAQALQLTENLNQKLDRVESLIAKVERWVHS" FT CDS 658..1071 FT /codon_start=1 FT /product="unknown" FT /note="hypothetical protein; ORF II" FT /db_xref="UniProtKB/TrEMBL:B3V799" FT /protein_id="ACE76863.1" FT /translation="MNYQATEKTPTYKRALEATESINSPALGFINPEDYSGGITGTKAL FT IKQNNLLIQLVVEFSVNVNSLSDQVAQLTKQLGKQPQQGSSTTALPDDLVEKLRNLSLD FT TEKKKEKRGTFYAYKDPYLIYKEEVEKLKKQQQ" FT CDS 1068..6974 FT /codon_start=1 FT /product="polyprotein" FT /note="contains aspatic protease, RNase H, and RT; ORF III FT ZnF_C2HC; zinc finger" FT /db_xref="GOA:B3V7A0" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:B3V7A0" FT /protein_id="ACE76864.1" FT /translation="MSSSRARTVVERLPPVTTSRVDERDNTPLYDDQIRDYRQWQRRRH FT NMGRRWNQLIGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRSDDRHHQVYIH FT RSEEAILCVDGDQVDRLLIQPESAEQLNRSGMSFIHMGIVQVRIQILHRQHEGTTALVV FT FRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNG FT EANLLVTRGIVGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSSADVQGQQWFLR FT PSNIPAVPMAPTNVDTRNMIDGSISLRFNSYQPAPDPAPVAYNQHDEEVPLDEDEEQIR FT NHTIALWREEHEVWDTLGEPSGKFDFYVRYTRPAHALLDPAHIIATGWDDLDDNPTSPS FT NNIRTYQTPSSSDEDDDMSYLQYLAQQSPVPPTTQNFTNPFSEGGGESTYPYPSFQPPF FT DLQSDDSYSTLATWSEYDAMSQSNSPSSHSADTVLDFDRYSFTTSEDDVVQSAWISENL FT FRENTGNGEVHNLVPPRPDTPRGDEVKGTQESMAHTVAVTTEELKHEAEFDYPAFARLQ FT AHEESGQPKPKTEKVLSSAISSYTPPRDTAMTPVAYPPAQNVAGPSYNPSPQMPMFEGY FT YPKRPNFKRDNHAFISLPSAHQSTGALFLMPQQIGLFHEVFTSWEAITKAYVAQQGITD FT PKDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILSQMRRVFSLED FT PATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSEKLWLKMP FT GDLGQRMKKAYEEKHPGNIIGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSIPIPG FT YYGGKSGEKRYGVRRTTTYKGKPHSTHARIEKTKHLRNKKCKCYLCGEEGHFARECPND FT RRNVKRVAMFEGLDLPDDCEIVSIDEGDPDSDAIFSISEGEEAGTLEEQCFVFQEECNG FT TYWLGKRGGYQDLVQISKEIYYCQHEWEENQPINDPAHVRCYPCKRETTQRARLHCKLC FT HITSCLMCGPTYFNKKITVQPIPQAPFNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQ FT LAQERELQLQLEQSRKELAGTDARRRKDKGVVIDEGSCYFNPEETTRIVAHGDTQVTKT FT RPVRNMLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGI FT NSKQQVKQKLKAGKMFINEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSMYGGVRLEGN FT TITFYKQITSINTRLAAPLLKQEEEEKEEELNLEEHRLIQEMVAYSTERPFVQFQQKFA FT GLIQDLKAQGYIGEEPMKYWAKNQVVCHLDIKNPDMVIEDRPLKHVTPQMEESFRKHVE FT ALLKIGAIRPSKSRHRTTAIIVNSGTSIDPITGKEVKGKERMVFNYKRLNDLTNKDQYS FT LPGIQTILQRLKGSTIFSKFDLKSGFHQVAMHPDSVEWTAFWVPSGLYEWLVMPFGLKN FT APAVFQRKMDHCFKGTEAFIAVYIDDILVFSKTEKEHEEHLQIMLSICQRNGLILSPTK FT MKIAQAEIEFLGAIIHNGLIKLQPHIVQKLLTFTNKQLEEVKGLRSWLGLLNYARSYIP FT HMGRLLSPLYAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCM FT DGWGGVCKWKIAQYDPRSSERVCAYASGKFNPPKSTIDAEIHAVMNSLNNFKIYYLDKS FT SLCLRTDCQAIISFFNKSNVNKPSRVRWIAFTDFLTGLGIPVNIEHIDGKNNHLADALS FT RLVTGFVFAEPQCQDKFQDDLGRLEAALQEKKEAPQAMHAEYVSLLIRSADRITLSLCS FT MRDSSRNRTYSCRPGKEPTKALICEQKSCQSKGDLVNTRTVHSKSAFNQQDNWWPSTNT FT NSLTSEAKRQGTTHMPISYPHAIGTTSNCVKWSSY" FT CDS 2233..2502 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF IV" FT /db_xref="UniProtKB/TrEMBL:B3V7A1" FT /protein_id="ACE76865.1" FT /translation="MILMIIQLVHQIIFAPIRPLPLLMRMMTCLISNTLLNNHLSLLLH FT RILPILFRKVVGNLPTLTPHFNHHSTFNQMTHIVLWQLGVNMML" FT CDS 3931..4218 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF V" FT /db_xref="UniProtKB/TrEMBL:B3V7A2" FT /protein_id="ACE76866.1" FT /translation="MKVIQIVTPSSVFPKEKKLELLRNNVLCSRKNAMERIGLVKEVDI FT RISCKSLRRSTIVSTNGRRINPLMIQHMFGVTLARGKPLRELAYIASYAT" FT CDS 6548..7012 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF VI" FT /db_xref="UniProtKB/TrEMBL:B3V7A3" FT /protein_id="ACE76867.1" FT /translation="MSRQVPGRFREVGSSSSGEERGSASNARRICLPVDQISGPHYPLA FT LLYEGLVSQQNLLMQARQRTNEGLNLRTEVMPIQRRLSEYEDCALQECIQSARQLVALH FT QHKLAYIRSKATRDNAYADKLPTCNRDHEQLCEVVELLEGISERISDTAV" XX SQ Sequence 7498 BP; 2312 A; 1617 C; 1675 G; 1894 T; 0 other; tggtatcaga gcttggttat gttcttacaa cgatgggagc ttaaaacctt ccattaggtc 60 tgaggaaaga gttggttgta tggtgtgtta attcctatct gtgttgttat ttctatgttc 120 ctgatataga taacgatcat cgcgaaaagg gtgaaggcac tatatctggc agcgagagga 180 gagtaagtcc agtgaaaccc ttcgcatgac gctaaaggtg atctaatcta tgtctagaat 240 ttgggaagaa gcaatacaga gatggtatga gacatcccat acagctaatc tcgagtactt 300 agatctagct tcaaaaccta aagtttccaa ttcagaaatc tcacataacc ttgctgtagt 360 ttatgatcgt ttaagtctgt ttagccgtgt ctctattaaa aacttcaaaa gtatccaaga 420 aaccctagaa aaacaagacc ttagaatcca aaaacttgag tccagtctga aaaccttaac 480 tagtgagttt atagcccata aaccgttgtc caaaactgag gtgaaagcct tagtaacaga 540 aattgccaaa cagcctaagc ttattgaagc acaggccctt cagctcacag aaaacttgaa 600 ccagaagctt gatagggttg aatccctgat agctaaggtt gaacggtggg ttcattcatg 660 aactatcagg ctactgaaaa gactcccact tacaaaagag ctttggaagc tacagagtct 720 attaacagtc cagcccttgg tttcataaat ccagaagatt attccggagg cattactggc 780 acaaaggcct tgatcaagca gaacaatttg ctcatccaac ttgttgtgga attttctgtc 840 aacgtcaaca gtttgtccga tcaagttgct cagcttacaa agcaacttgg aaagcagccc 900 caacaaggct catcaacaac agccttacct gacgatttgg ttgaaaaact caggaacctt 960 tccttagata ctgagaaaaa gaaggagaag cgtggtacct tctacgctta caaagaccca 1020 tacctgatct acaaggaaga ggtagaaaag ctaaagaaac agcaacaatg agcagtagcc 1080 gtgcaagaac agtggtggaa cgactcccac cagtaaccac ttcccgagta gacgagcggg 1140 ataacactcc cctctatgat gatcaaatac gggattatag gcagtggcag cggcggcggc 1200 acaacatggg gcggagatgg aatcagttga taggacgacc ctacaatcag accttggaac 1260 aggttgtgga ccctgaagta gctttacagc tatcaatgca ggagcgtgcc agactagtac 1320 cagcagaggt actttatagg tccaggagtg atgatcggca ccaccaagtt tacattcaca 1380 gatcagagga ggcaatcctt tgtgttgatg gtgatcaagt tgaccggtta cttatacaac 1440 cggaaagtgc tgaacaacta aacaggagcg gtatgtcctt tattcatatg ggcatagttc 1500 aagtccggat ccagatccta cacaggcaac atgagggaac aacagccctt gtggttttca 1560 gggataatcg gtggcaagga gaccagtcaa tattcgctac catggagctt gatttaacta 1620 aaggtatgca gatggtgtac ataatcccgg acaccatgat gacagtcagg gacttctgcc 1680 ggaatgttca aatttccata ttaacaaaag gatatgggaa ttggcagaat ggcgaggcaa 1740 atctgcttgt tacaagggga attgttggac gattatcaaa tacccctaat gtggcctttg 1800 cctatcagat ccaaaatgtt accgactact tggtcagcca tggaattcaa gcattgccag 1860 gacggcggta ttcatctgca gatgtacagg gccaacaatg gtttctacga ccatccaata 1920 ttccagctgt tccaatggcc cccactaacg tggatacacg caacatgata gacggatcta 1980 tttctctcag attcaacagt taccaaccag ctccagatcc ggcacctgtt gcttataatc 2040 aacatgatga ggaggtacct cttgatgagg atgaagaaca gatccgtaat cacaccattg 2100 ctttatggcg tgaggaacac gaggtatggg atacccttgg tgaaccctcg ggtaaatttg 2160 atttttatgt tcgttacacc cgacctgcac atgctttact agaccctgct cacattattg 2220 ccactggttg ggatgatctt gatgataatc caactagtcc atcaaataat attcgcacct 2280 atcagacccc ttcctcttct gatgaggatg atgacatgtc ttatctccaa taccttgctc 2340 aacaatcacc tgtccctcct actacacaga attttaccaa tcctttttcg gaaggtggtg 2400 gggaatctac ctacccttac ccctcatttc aaccaccatt cgaccttcaa tcagatgact 2460 catatagtac tttggcaact tggagtgaat atgatgctat gagtcaatca aacagtcctt 2520 catcacacag tgcggatact gtccttgatt ttgacagata ttcttttaca acaagtgagg 2580 atgacgtggt tcaatcagcc tggatctctg aaaatctatt tcgtgaaaac accggaaacg 2640 gtgaagttca caatcttgtt ccacctagac cggacacccc tcggggtgat gaggtcaaag 2700 gaactcaaga atccatggcc catactgttg cagtaaccac agaggaatta aaacatgagg 2760 ctgaatttga ctatccggct tttgccagat tacaagccca tgaagagtca gggcaaccca 2820 agcccaaaac tgaaaaggtt ctgtcctcag caatttcttc atatacccca ccaagggata 2880 ctgcaatgac acctgttgca tatccaccgg ctcaaaacgt tgccggccca agttacaatc 2940 caagcccaca aatgcccatg tttgaagggt attatcccaa aaggccaaat ttcaagaggg 3000 ataatcatgc ctttatcagt cttccctcgg cccaccaaag tactggggct ttatttctta 3060 tgcctcaaca aattggcctg tttcatgagg tttttacttc atgggaagca atcaccaaag 3120 cttatgttgc tcaacagggt atcacagacc caaaagataa ggccgatttc attgaaaata 3180 tgttgggtcc aacagagaaa ataatttgga ctcaatggcg aatgggctac gccgatgaat 3240 atgagaacct tgtcacaaca gctgacggac gtgagggtac tcagaatatc ctctctcaga 3300 tgcgaagggt cttttcctta gaagatccag caacaggttc aactgcagtc caagatgaag 3360 cctatagaga tttggaaagg cttacctgtg attctgtcaa gcatatagtc caatatttaa 3420 atgactttat gcggattgca gcaaaaactg ggcgcatgtt cataggccca gagctaagtg 3480 aaaagttgtg gcttaaaatg ccaggtgact taggccaaag gatgaagaag gcctacgaag 3540 aaaaacatcc agggaacatt attggtgttt gccctaggat cttgtttgcc tataagtatt 3600 tagaaggcga gtgtaaagat gcagcgttca gacgctccct gaaaaatcta tccttttgca 3660 gctcaatccc tatcccaggc tattacggtg gtaaaagtgg agaaaagcgt tatggtgtaa 3720 ggcgcacaac cacttataag ggaaagcctc atagcaccca tgcaaggatt gaaaagacaa 3780 aacatttgcg caataaaaag tgcaagtgtt atctgtgtgg agaagaaggt cacttcgccc 3840 gggaatgtcc aaatgaccgg cgaaatgtga aacgagttgc aatgttcgaa ggtttagacc 3900 tcccagatga ctgtgagata gtctccatcg atgaaggtga tccagatagt gacgccatct 3960 tcagtatttc cgaaggagaa gaagctggaa ctcttgagga acaatgtttt gtgttccagg 4020 aagaatgcaa tggaacgtat tggcttggta aaagaggtgg atatcaggat ctcgtgcaaa 4080 tctctaagga gatctactat tgtcagcacg aatgggagga gaatcaaccc attaatgatc 4140 cagcacatgt tcggtgttac ccttgcaaga gggaaaccac tcagagagct cgcttacatt 4200 gcaagctatg ccacataaca tcttgcctta tgtgtggccc cacctatttt aacaagaaga 4260 ttactgtcca gccaatacct caagcaccct tcaaccaaaa aggattgcta cagcaacaac 4320 aagagtacat cgcctggtgc aacaatgaaa ttgccagatt aaaggaagaa gttgcttttt 4380 ataagcagct tgcccaggaa agagagttgc aattacaact cgagcagtcc agaaaggaac 4440 tcgcaggaac agacgctcgc aggcgaaaag acaaaggagt agtaattgat gagggatcat 4500 gctacttcaa cccagaagaa acaactagaa tcgttgctca tggagataca caggttacta 4560 aaaccagacc agtgaggaat atgctctaca acatggatgt gcgaatggag attccaggca 4620 tcccagcttt tacagtaaag gcgattcttg acacaggagc aacaacctgc tgtattgaca 4680 gcagaagtgt accaaaagat gcccttgaag agaattcatt tgtggtaaat ttctcaggca 4740 tcaattccaa gcagcaagtt aagcagaagc ttaaagctgg aaaaatgttc atcaatgagc 4800 attacttccg gatcccatat tgttacagct ttgagatgca aattggtgat ggcatccaac 4860 ttatccttgg gtgcaacttt atacgaagta tgtacggtgg tgtacgatta gaaggtaata 4920 ctataacctt ctacaagcag ataacaagta tcaacaccag gcttgctgca cctctcctta 4980 agcaagaaga agaggagaaa gaagaagaac tcaacctgga agagcacagg ttgattcaag 5040 aaatggttgc atactccact gagcggccat ttgttcagtt ccaacaaaag tttgcagggc 5100 ttattcaaga cttaaaagcc cagggataca ttggggaaga gcctatgaag tattgggcca 5160 aaaaccaagt tgtttgccat ctggacatta aaaacccaga tatggtaatt gaagatcgcc 5220 cactgaagca tgtgacaccc cagatggaag aaagctttcg aaagcatgtg gaagccctgt 5280 taaaaatagg agcaatccgg cccagtaaaa gtcgacacag aaccacagct ataatagtca 5340 actctggaac cagcatagac cctatcacag ggaaggaggt taagggaaag gagcgaatgg 5400 tctttaacta taaaaggtta aatgacctaa ctaataaaga tcagtacagc cttcctggaa 5460 tccagactat cctgcagaga ttaaagggga gcacaatatt ttccaaattc gacctaaaaa 5520 gtggctttca tcaggtagca atgcacccag attcggtaga atggacagct ttttgggtgc 5580 ccagcggtct ctatgaatgg ttagtcatgc cattcgggtt aaagaatgcc ccagcagtgt 5640 tccaaagaaa gatggatcac tgtttcaagg gaacagaagc ctttattgct gtttatattg 5700 atgatatcct ggtgttctca aagactgaaa aggagcatga agagcactta cagattatgc 5760 tctcgatctg ccaaaggaat gggcttattc tgagcccaac aaagatgaaa attgcccaag 5820 ctgagatcga attccttggg gcaatcattc ataacgggct tatcaagtta cagccccata 5880 ttgttcagaa gttgctaact tttaccaaca agcaacttga ggaggtcaaa gggcttagat 5940 catggctggg tctgttgaac tatgcaagga gctacattcc tcatatgggc cgcctactta 6000 gcccattata tgccaaagtc agcccaactg gtgagcggag aatgaacagg caagactggg 6060 ccttaattga caaaataaga gcccaagtcc agaacttgcc agccctggag ctaccacctg 6120 cggactgttt catcatcatt gaaacagatg gatgcatgga tggttgggga ggagtctgca 6180 aatggaagat agcacaatac gaccctagga gttcagaaag ggtttgtgcc tatgcaagtg 6240 ggaagttcaa cccgccaaag tcaacaattg atgcggagat acatgcagtg atgaacagcc 6300 tcaacaactt taaaatctat tacctagaca agtccagttt atgtttgagg actgactgtc 6360 aagctattat tagcttcttt aataagtcca atgttaacaa accgtctagg gttagatgga 6420 ttgctttcac agatttcctt actggtctag gaatccctgt aaatatagag cacatagatg 6480 gaaaaaataa ccatctggct gatgctctgt ccagattagt aactggtttt gtttttgcag 6540 aaccacaatg tcaagacaag ttccaggacg atttagggag gttggaagca gctcttcagg 6600 agaagaaaga ggctccgcaa gcaatgcacg cagaatatgt ctccctgttg atcagatcag 6660 cggaccgcat taccctctcg ctctgctcta tgagggactc gtctcgcaac agaacctact 6720 catgcaggcc aggcaaagaa ccaacgaagg ccttaatttg cgaacagaag tcatgccaat 6780 ccaaaggcga cttagtgaat acgaggactg tgcactccaa gagtgcattc aatcagcaag 6840 acaactggtg gccctccacc aacacaaact cgcttacatc agaagcaaag cgacaaggga 6900 caacgcatat gccgataagc tacccacatg caatcgggac cacgagcaac tgtgtgaagt 6960 ggtcgagcta ttagaaggaa tctcagaaag gatcagcgat acagctgtct aggacagctg 7020 gcttcaatta tggagcgtga tggacccccc cgcaataatc caaagtttgg tgtgaattga 7080 gtagtgcgtc tttatggacc actactttat tgtaataatt gacgcttttt gtagtgcgct 7140 cttagtgcgc tctactttat gctttcgctt ttgtaagtgc gtctgtcttt cttcagatgc 7200 ttatccttta agcatctttt gctttttgcg tggcatcctt tagttcacaa tttaaagaat 7260 gacgatgggg cccaagatgt gcacccggtt ctctaaattg cctatataag gatatgccat 7320 agccttgttt ttgcaagtca ggaatacctg agcataactt ggctaagcaa aagtttgtaa 7380 gtgttctaag ctttcctttg taagctttct gttttgtttt aataaaatct ctcgtcaatc 7440 gttgtgaaca catattgttt gtttatattg ttgtattgta tttgttgcaa aatcgtaa 7498 //