ID EU708316; SV 1; circular; genomic DNA; STD; VRL; 7497 BP. XX AC EU708316; XX DT 22-JUN-2008 (Rel. 96, Created) DT 01-JUL-2009 (Rel. 101, Last updated, Version 3) XX DE Citrus yellow mosaic virus isolate SOP, complete genome. XX KW . XX OS Citrus yellow mosaic virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7497 RA Baranwal V.K., Prasanna Kumar B.K., Singh J., Ahlawat Y.S.; RT "Citrus yellow mosaic virus isolate-SOP, sweet orange-Pulvendla, complete RT genome"; RL Unpublished. XX RN [2] RP 1-7497 RA Baranwal V.K., Prasanna Kumar B.K., Singh J., Ahlawat Y.S.; RT ; RL Submitted (08-MAY-2008) to the INSDC. RL Plant Virology Unit, Division of Plant Pathology, Indian Agriculture RL Research Institute, Pusa Road, New Delhi, New Delhi, Delhi 110012, India XX DR MD5; c6ad37436997615abac1fd11de833692. XX FH Key Location/Qualifiers FH FT source 1..7497 FT /organism="Citrus yellow mosaic virus" FT /host="sweet orange Pulvendla" FT /isolate="SOP" FT /mol_type="genomic DNA" FT /country="India" FT /db_xref="taxon:174178" FT CDS 231..662 FT /codon_start=1 FT /product="unknown" FT /note="ORF I" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:B3V792" FT /protein_id="ACE76856.1" FT /translation="MSRIWEEAIQRWYETSHTANLEYLDLASKPKVSNSEISHNLAVVY FT DRLSLFSRVSIKNFKSIQETLEKQDLRIQKLESSLKTLTSEFIAHKPLSKAEVKALVTE FT IAKQPKLVEAQALQLTENLNQKLDRVESLIAKVERWVHS" FT CDS 659..1072 FT /codon_start=1 FT /product="unknown" FT /note="ORF II" FT /db_xref="UniProtKB/TrEMBL:B3V793" FT /protein_id="ACE76857.1" FT /translation="MTYQVTEKTPTYKRALAATEPINSPSLGFVNPEEYSGGITGTKAL FT IKQNNLLIQLVVELSVNVNSLSDQVAQLTEQLGKQPQQGSSSTALPDDLIDKLRDLSLG FT TEKKKEKRGTFYAYKDPYLIYKEEVEKLKKQQS" FT CDS 1069..6972 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF III" FT /db_xref="GOA:B3V794" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:B3V794" FT /protein_id="ACE76858.1" FT /translation="MSTSRARTVVEQLPPATTSRVEERNNTPLYDDQIRDYRQWQRRRH FT NMGRRWNQLMGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRNDDRHHQVYIH FT RSEEAILCVDGDQVDRLLIQPESAEQLNRSGMSFIHMGIVQVRIQILHRQHEGTTALVV FT FRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNG FT EANLLVTRGIVGRLSNTPIVAFAYQIQNVTDYLVSHGIQALPGRRYSAADVQGQQWFLR FT PSNIPADPMAPTNVATRNMIDGSISLRFNSYQPAPDPAPIAYNQHDEEIPPDEDEEQIR FT NHITALWREDNEVWDTLGEPSGKFDFYVRYTRPAHALQNPAHIIATGWDDLDDYPSPSS FT PSNTPSSTSSSDEDDDMSYLQYLAQQSPVPPTTQDFTNPFSEGGGESTYPYPSFQPPFD FT LQSDDSYGTLATWSEYDAMSQSNSPQHPSANTVFDFDRYSFTTSEDDVVQSAWISENLF FT RENTGNGEVHNLVPPGPDTLRGDEVKGTQESMAHTVAVTTEGPKQEAEFDYPAFARLQD FT HEESGRLKPKTEKVLSSAISSYTPPRDTAMTPVAYPPAQNVASPSYNLSPQMPMFEGYS FT PKRPNFKRDNHTFISLPSAQQNTGALFIMPQQIGLFHEVFTSWEAITKAYVAQQGITDP FT KDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILSQMRRVFSLEDP FT ATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRTFIGPELSEKLWLKMPG FT DLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSIPIPGY FT YGGRSGEKRYGVRRTTTYKGKPHNTHARIEKTKHLRNKKCKCYLCGEEGHFARECPNDR FT RNVKRVAMFEGLDLPDDCEIVSIDEGDPDSDAIFSISEGEETGAIEEQCFVFQEECNGT FT YWLGKRGGYQDLVQISKEIYYCQHEWEENQPIDDSAYVRCYPCKRETTQRARLHCKLCH FT ITSCLMCGPTYFNKKITVQPIPQAPFNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQL FT AQERELQLQLEQSRKELAGADSRRRKDKGVVIDEGSCYFNPEETTRIVAHGDTQVTKTR FT PVKNMLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGIN FT SKQQVKQKIKAGKMFINEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSMYGGVRLEGNT FT VTFYKQITSINTRLAAPLLKQDEEEKEEELNLDEHRLIQEMVAYSTERPFVHFQQKFAG FT LIQELKAQGYIGEEPMKYWAKNKVVCHLDIKNPDMVIEDRPLKHVTPQMEESFRKHVEA FT LLKIGAIRPSKSRHRTTAIIVNSGTSIDPITGKEVKGKERMVFNYKRLNDLTNKDQYSL FT PGIQTILQRLKGSTIFSKFDLKSGFHQVAMHPDSIEWTAFWVPSGLYEWLVMPFGLKNA FT PAVFQRKMDHCFKGTEAFIAVYIDDILVFSKSEREHEEHLKIMLSICQKNGLILSPTKM FT KIAQVEIEFLGAIIHNGLIKLQPHIVQKLLTFTNKQLEEVKGLRSWLGLLNYARSYIPH FT MGRLLSPLYAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCMD FT GWGGVCKWKLAQYDPRSSERVCAYASGKFNPPKSTIDAEIHAVMNSLNNFKIYYLDKSS FT LCLRTDCQAIISFFNKSNVNKPSRVRWIAFTDFLTGLGIPVNIEHIDGKNNHLADALSR FT LVTGFVFAEPQCQDKFQDDLGKLEAALQEKKEAPQAMHAEYVSLLTKSADRITLSLCST FT RGSSLSRTYSCRPGKEPMKALICEQKSCQFKGDLGNTKTVHSRSASNQQDNWWPSTNIN FT SVTSGVKLQETTHMPINCPRAIGTTNSCVKWSSF" FT CDS 2243..2500 FT /codon_start=1 FT /product="unknown" FT /note="ORF IV" FT /db_xref="UniProtKB/TrEMBL:B3V795" FT /protein_id="ACE76859.1" FT /translation="MIIHHPPVLLIPPPLLPLLMRMMTCPTFNILLSNHLSLLLHRILP FT ILFRKVVGSLPTLTPHFNPHLTYNQMIHTVLWQPGVNMML" FT CDS 3905..4216 FT /codon_start=1 FT /product="unknown" FT /note="ORF V" FT /db_xref="UniProtKB/TrEMBL:B3V796" FT /protein_id="ACE76860.1" FT /translation="MIAKSSPLMKEIQTAMLSSAFQREKKLEQLKNNVLCSRKNAMELI FT GLVKEVATRISCKSLKRSTIVSMNGRRINPLMIQHMFDVTLARGRPLKELAYIASYAT" FT CDS 6546..7010 FT /codon_start=1 FT /product="unknown" FT /note="ORF VI" FT /db_xref="UniProtKB/TrEMBL:B3V797" FT /protein_id="ACE76861.1" FT /translation="MSRQIPGRFREVGSSSSGEERGTTGNARRICLPVDQISGPHYPLA FT LLYEGLVSQQNLLMQARQRTNEGLNLRTEVMPIQRRLGEYEDCALQECIQSARQLVALH FT QHKLSYIRSKATRNNAYADKLPTCNRDHEQLCEVVELLEGISERISDTAV" XX SQ Sequence 7497 BP; 2322 A; 1587 C; 1666 G; 1922 T; 0 other; tggtatcaga gcttggttat gttcttacaa cgatgggagc ttaaaacctt ccattaggtc 60 tgaggaaaga gttaactgta tggtgtgtcc agttcccatt tgtattttta ttcctgtgtt 120 catgatatag aaaacgatta tcgcgaaaag ggtgaaggca ctatatctgg cagcgagagg 180 agagtaagtc cagtgaaacc cttcgcatga cgctaaaggt gatctaatct atgtctagaa 240 tttgggaaga agcaatacag aggtggtacg aaacatccca tacagctaat ctcgagtact 300 tagacctagc ttcaaaacca aaagtttcca attcagaaat ttcacacaac cttgctgtag 360 tttatgatag attgagtctg tttagtcgtg tttctattaa gaacttcaaa agtattcaag 420 aaaccctaga aaaacaagac cttagaatcc aaaaacttga gtctagtttg aaaaccttaa 480 ccagtgagtt tatagcccat aaacctttgt ctaaagctga ggtgaaagcc ttagtaacag 540 agattgccaa acagcctaag cttgttgaag cacaagccct ccagcttaca gaaaacttga 600 accaaaagct tgatagggtt gagtctttaa tagctaaggt ggaacgttgg gtccattcat 660 gacctaccag gttactgaaa aaaccccaac atacaagcgt gctcttgcgg caactgagcc 720 tattaacagt ccatcacttg gatttgttaa cccagaggaa tattctggtg gtattactgg 780 tactaaagct ctcattaagc aaaacaactt gcttattcaa cttgtggtag agctttccgt 840 caacgtcaac agtctgtctg atcaggttgc tcaactaaca gagcaacttg gaaagcaacc 900 tcagcagggc tcatcatcga cagccttgcc tgacgatttg attgacaaac tcagagacct 960 ttctttaggt actgagaaga aaaaggaaaa gcgtggtacc ttctacgctt acaaagatcc 1020 ttatttgatt tacaaagaag aggtagaaaa gctgaaaaag cagcaatcat gagcaccagc 1080 cgtgctagaa cagtggtgga acaactccca cctgcaacta cgtcccgagt agaggagcga 1140 aataacactc ctctctatga tgatcaaata cgggattaca ggcagtggca gcggcggcgt 1200 cacaacatgg gaaggagatg gaatcagttg atgggtcgac cctacaatca gaccttagaa 1260 caagtggtag atcctgaagt agctttacag ctatcgatgc aggaacgtgc aagactagta 1320 ccagcagagg tactgtatag atcaaggaac gatgatcggc accatcaggt ctatatccac 1380 agatcagagg aggctatcct ttgtgttgat ggagatcaag ttgaccggtt attgatacaa 1440 ccagaaagtg ctgaacagtt aaacaggagt ggtatgtcct ttattcatat gggcatagtt 1500 caagttcgga tccagatcct acacagacaa catgagggaa caactgccct tgtggtgttt 1560 agggataatc ggtggcaggg agatcaatcg atatttgcta ccatggagct tgatttaacc 1620 aaggggatgc agatggtgta cataatccca gacactatga tgacagtaag ggatttctgc 1680 cggaatgttc aaatttccat attaacaaaa ggatatggga attggcagaa cggtgaggca 1740 aatctacttg ttacaagggg aatcgttgga cggttatcaa acacccctat tgtagccttt 1800 gcctatcaga ttcaaaatgt tacagactac ctagtcagtc atgggattca agctttgcca 1860 ggacggcggt attcagcagc agatgtacag ggccaacaat ggtttttaag accatccaat 1920 attccagcag acccaatggc ccccaccaat gtggctacaa gaaacatgat tgacggatcc 1980 atttccttga gattcaatag ttaccaacca gctcccgatc cagcacctat tgcttacaat 2040 cagcatgatg aggaaatacc cccggatgag gacgaagaac aaattcgtaa tcacatcact 2100 gctttatggc gagaagataa cgaggtatgg gatacacttg gagagccctc gggtaaattt 2160 gatttttatg ttcgctatac ccgacctgca catgctttac agaaccctgc tcacattatt 2220 gctactggtt gggatgatct agatgattat ccatcaccct ccagtccttc taataccccc 2280 tcctctactt cctcttctga tgaggatgat gacatgtcct accttcaata tcttgctcag 2340 caatcacctg tccctcctac tacacaggat tttaccaatc ctttttcgga aggtggtggg 2400 gagtctacct acccttaccc ctcatttcaa cccccatttg acctacaatc agatgattca 2460 tacggtactt tggcaacctg gagtgaatat gatgctatga gccaatctaa cagtccacag 2520 cacccaagtg caaatactgt ttttgatttt gacaggtatt catttacaac aagcgaagat 2580 gacgtggttc aatcagcctg gatttctgaa aatctatttc gtgaaaacac cggaaacggt 2640 gaagttcaca atcttgttcc acctggaccg gacaccctcc ggggtgatga ggtcaaagga 2700 actcaagaat ccatggccca tactgttgca gtaaccacag aaggaccaaa gcaggaggct 2760 gagtttgact atccggcatt tgccagatta caagaccatg aagagtccgg gaggctcaag 2820 cccaaaactg agaaagtctt gtcctcagca atttcttcat ataccccacc aagggacact 2880 gcaatgacgc ctgttgcata ccctcctgcc cagaatgtag ctagcccaag ctacaattta 2940 agcccacaga tgcccatgtt tgagggctac agtccaaaaa ggcccaattt caaaagagat 3000 aatcatactt ttataagtct tccctcggcc caacagaata ctggagcctt attcatcatg 3060 cctcaacaga taggcctgtt tcatgaagtc tttacttcat gggaagcaat aaccaaagct 3120 tatgttgctc aacagggtat cacagaccca aaagacaaag ctgatttcat tgagaacatg 3180 ctgggtccaa cagagaaaat aatctggact caatggcgta tgggctacgc tgatgaatat 3240 gagaatcttg tgacaacagc tgatggacgt gagggtactc aaaatatcct ctctcagatg 3300 cgaagggtct tttcattaga agatccagca actggttcaa ctgcagtcca ggatgaagcc 3360 tacagggatt tggagaggct tacttgtgat tctgttaagc atatagtcca atacttaaat 3420 gactttatgc ggattgcagc aaagactggg cgtacgttca taggcccaga gttaagtgag 3480 aaattatggc ttaaaatgcc aggtgactta ggccaaagga tgaagaaggc ctatgaggag 3540 aaacatccag ggaacattgt tggtgtttgc cctcggattc tatttgctta taagtatctt 3600 gaaggcgagt gtaaagatgc agcgttcagg cgctccttga agaacctatc tttttgcagc 3660 tcaatcccta tcccaggtta ttatggtgga agaagtggag agaagcgtta tggtgtaagg 3720 cgcacaacca cttataaagg gaaaccccat aacacacatg cgagaattga gaaaacaaag 3780 catttgcgca ataaaaagtg caagtgttat ctttgtggag aagaaggtca cttcgcccgt 3840 gaatgtccaa atgaccggcg aaatgtgaag cgagttgcaa tgtttgaagg attagatctc 3900 ccagatgatt gcgaaatcgt ctccattgat gaaggagatc cagacagcga tgctatcttc 3960 agcatttcag agggagaaga aactggagca attgaagaac aatgttttgt gttccaggaa 4020 gaatgcaatg gaacttattg gcttggtaaa agaggtggct accaggatct cgtgcaaatc 4080 tctaaagaga tctactattg tcagcatgaa tgggaggaga atcaacccat tgatgattca 4140 gcatatgttc gatgttaccc ttgcaagagg gagaccactc aaagagctcg cttacattgc 4200 aagctatgcc acataacatc ctgtcttatg tgtggcccca cctatttcaa caaaaagatt 4260 actgtccagc caatacctca agcacccttc aaccaaaagg gattgttaca gcaacagcag 4320 gaatacatcg cctggtgcaa taatgagatt gccagattaa aggaagaagt tgctttttat 4380 aagcagcttg cccaggaacg agagttgcaa ttacaacttg agcagtccag aaaagaacta 4440 gcaggagcgg actctcgcag acgaaaagac aaaggagtag taattgatga aggatcatgc 4500 tacttcaacc cagaagaaac aaccagaata gttgctcacg gagatacaca ggttaccaaa 4560 actcgacctg tgaaaaatat gttatacaac atggatgtgc gaatggagat tccaggcatc 4620 ccagctttta cagtaaaggc aattttagac acaggagcaa caacctgctg cattgacagt 4680 agaagtgtgc caaaagatgc tcttgaggag aattcgtttg tggtgaattt ctcaggcatc 4740 aactcaaaac agcaagttaa gcagaaaatt aaggctggaa aaatgttcat taatgagcat 4800 tacttccgga ttccatattg ttacagcttc gagatgcaaa ttggtgatgg catccaactc 4860 attctcggat gcaactttat acggagcatg tacggaggtg tacgattaga gggtaataca 4920 gtaaccttct acaagcagat cacaagtatc aacaccagac ttgctgcacc tctcctcaag 4980 caggatgaag aggaaaaaga agaagaactt aacctagatg agcacaggct aattcaggaa 5040 atggttgcat attctactga gcggccattt gttcatttcc aacaaaaatt tgcagggctt 5100 attcaagagt taaaggccca gggatacatt ggggaagagc ctatgaagta ttgggccaaa 5160 aacaaagttg tttgccatct ggatattaaa aatccagata tggtaattga agatcgccca 5220 ctgaagcatg tgacacctca gatggaagaa agctttcgca agcatgtgga agccctttta 5280 aaaattggtg cgatccggcc cagcaaaagt cggcacagga caacagccat catagtcaac 5340 tctggaacca gtattgaccc tatcacaggg aaagaagtga aaggcaagga gagaatggtc 5400 tttaactata aacggttaaa tgaccttaca aacaaagatc aatacagcct tcctggaatc 5460 cagacgatcc tacaaagatt gaaggggagc acaatatttt ccaaatttga ccttaaaagt 5520 ggttttcacc aggtagcgat gcatccagat tcaattgagt ggacagcttt ttgggtacct 5580 agcggtctct atgaatggtt ggtcatgcca ttcggattaa agaacgctcc ggcagttttc 5640 caaagaaaaa tggatcactg tttcaaggga acggaggcct ttatagctgt ttatatcgat 5700 gacatcctgg tgttctcaaa atctgaaagg gaacatgaag agcacttaaa gatcatgctc 5760 tcaatctgcc aaaagaatgg gcttattctg agcccaacaa aaatgaaaat tgcccaagtt 5820 gagattgaat ttcttggggc aatcattcac aacggactta tcaagttaca gccccacatt 5880 gttcaaaaat tacttacttt taccaacaag caacttgagg aggttaaagg gcttagatca 5940 tggttgggcc tactcaacta tgcaaggagt tacattccgc acatgggccg cttactcagc 6000 ccattatatg ccaaagtcag cccaactggt gaacggagaa tgaataggca agattgggcc 6060 ttaattgaca aaatacgagc ccaagtccag aacttgccag ccctagagct accacctgca 6120 gactgtttca tcatcattga aacggatgga tgcatggatg gttggggagg tgtctgcaaa 6180 tggaaactag cacagtatga ccctaggagt tcagaaaggg tttgtgctta tgcaagtgga 6240 aagttcaacc caccaaaatc aacaattgat gcggagatac atgcagtgat gaacagcctc 6300 aacaacttta aaatctacta cctagacaag tctagcttat gtttaaggac tgactgccaa 6360 gctattatta gcttctttaa taagtccaat gtcaacaaac cgtctagggt tagatggatt 6420 gctttcacag atttccttac tggtctagga attcctgtaa atatagagca catagatgga 6480 aagaataacc atctggctga tgctctgtcc agattagtaa ctggttttgt ttttgcagaa 6540 ccacaatgtc aagacaaatt ccaggacgat ttagggaagt tggaagcagc tcttcaggag 6600 aagaaagagg caccacaggc aatgcacgca gaatatgtct ccctgttgac caaatcagcg 6660 gaccgcatta ccctctcgct ctgctctacg aggggctcgt ctctcagcag aacctactca 6720 tgcaggccag gcaaagaacc aatgaaggcc ttaatttgcg aacagaagtc atgccaattc 6780 aaaggcgact tggggaatac gaagactgtg cactccagga gtgcatccaa tcagcaagac 6840 aactggtggc cctccaccaa cataaactca gttacatcag gagtaaagct acaagaaaca 6900 acgcatatgc cgataaattg cccacgtgca atcgggacca cgaacagctg tgtgaagtgg 6960 tcgagctttt agaaggaatc tcagaaagaa tcagcgatac agctgtctag gacagctggc 7020 ttcaataatg gagcatggtg gacccccgta ataatccaaa agtatggagt gctttattag 7080 tgcgtcttta tggaccacta ttgtaataat ttagtgtgct ttactttatg cttttatgct 7140 tttgtaagtg cgctgtagtg cgcctgcctt tatgcttttg ttagatgctt atcctttaag 7200 catcttttgc tttttgcgtg gcatccttta gttcacaatt taaagaatga cgatggggcc 7260 caagatgcgc acccggttct ctaaattgct atataaggaa gtgccaaagc cttgtttttg 7320 caagtcagga actcacctga gcataacttg gctaagcaaa agagtttgta agtttttaag 7380 ctttcgcttt ctgtttgtag gctttcagtt cttaataaat ctctcgttaa tcgttgtgaa 7440 cacaccttct attgttattt ttgtttgtgt tattcttatt cgatcccgtt gcgttat 7497 //