ID EU684141; SV 1; linear; genomic RNA; STD; VRL; 6290 BP. XX AC EU684141; XX DT 22-JUL-2008 (Rel. 96, Created) DT 22-JUL-2008 (Rel. 96, Last updated, Version 1) XX DE Diascia yellow mottle virus strain OR, complete genome. XX KW . XX OS Diascia yellow mottle virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Tymovirus; OC unclassified Tymovirus. XX RN [1] RP 1-6290 RX DOI; 10.1007/s00705-008-0149-z. RX PUBMED; 18600295. RA Segwagwe A.T., Putnam M.L., Druffel K.L., Pappu H.R., Eastwell K.C.; RT "Molecular characterization of a new tymovirus from Diascia ornamental RT plants"; RL Arch. Virol. 153(8):1495-1503(2008). XX RN [2] RP 1-6290 RA Eastwell K.C., Segwagwe A.T., Putnam M.L., Druffel K.L., Pappu H.R.; RT ; RL Submitted (30-APR-2008) to the INSDC. RL Department of Plant Pathology, Washington State University, 24106 North RL Bunn Road, Prosser, WA 99350, USA XX DR MD5; 258a80d19c84df755caf635934238d14. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6290 FT /organism="Diascia yellow mottle virus" FT /host="Diascia hybrid cultivar" FT /strain="OR" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Apr-2002" FT /db_xref="taxon:547467" FT 5'UTR 1..154 FT /note="four potential hairpin stem-loop structures" FT CDS 155..2068 FT /codon_start=1 FT /product="movement protein MP" FT /db_xref="InterPro:IPR004935" FT /db_xref="UniProtKB/TrEMBL:B4YUL5" FT /protein_id="ACF40326.1" FT /translation="MDHGLPACPRSPVHHLSPRFFPESGSVSLRESAPALSRPLSLDNH FT QGRSPLPQLMRHSCLRIWNHPAPPCCPQGHRDLPPFLPLEFSGLHSQLRHVYETFQVSK FT TGCHQPKLRRTHQLSSHSRRHRSVPDDLLITPPTRDRLHARRSHVLHPSSNRRSFRTLP FT SAQQAPLQPRCPSREQLHGSLSLPNHLHIPTKLEQPPLHPRRASRRKLRPTSVRHPVVE FT APTHHQPLLQPVRDHSGILGPCPLDSHSTWASDQRFSRAPARILQGAPGPSAARSHVSQ FT PTSPPSDGPFRGVRRPVHVHSSRPHPPNLRSSRLRQDPFKQAEARLGHSPSVGQPSNLR FT PPKRAGTPKSGVQLLPLPHSEGPSLLGPAPQPLPGTSASILGPRPPCLEGAHHWLTSPQ FT GIVPSSCSSSTGRAPPRALSHSSPHSPPNRCVLSAESLLFGTLPKNSVPQQVLPVRLSA FT TVGLPLGAPTIHTPPPIVASCAADLHDPSDGLSNSHPRAAAVGPKPSRRLSHTPSPLRV FT QPELAAGILPRAHSSELSAPGHGFQPEPAPNSLRGTSLRHQLSPSTSPRAPHRKPRSES FT APRASSPDATDKPASSSELFRSPGALVVPEPPLRDLEPPLSALSFSFPKFPASSRASTS FT PV" FT CDS 162..5534 FT /codon_start=1 FT /product="replicase-associated protein RP" FT /db_xref="GOA:B4YUL6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B4YUL6" FT /protein_id="ACF40325.1" FT /translation="MAFQLALEALSTTSHRDSSLNPVLYHSVSPLQRSLDLFPWIITRD FT ALPFLNSCGIPVSGFGTTPHPHAVHKAIETFLLFSHWSSLASTLSSVMFMKPSKFRKLA FT AINPNFDELTNFRLTPADTVRYPTTSSSLPQHEIVFMHDALMYFTPHQIVDLFERCPLL FT NRLHCSLVVPPESSFTDLSLFPTIYTYQLNSNNLHYTPEGHHAGSYDQPRSAIRWLKLR FT RITSPFFNLSVTILESWGPVHSILIQRGLPISDSLAPPHASFKVPQARVLPEATFLNQP FT LRHRMVPSEVYDALFTYTRAVRTLRTSDPAGFVRTHSNKPKHAWVTPQAWDNLQTYALL FT NAPVRPRVVYNFFLSPIQKAHLYLAQHLNPFLVRALPFLGLVLPALKVLTTGLPVPRVS FT SLQVAHRQLVGPHPEPSPTAHPILRQIVAFSQQNPFFLELCQRTPFLNRFFRSACRPPS FT AFRLELQRSTLPLPSWLAVLLISMIPVMASPTLTLVLPQSVQSLHDGYHTHLHPSEFNL FT SWPLESFHVPTRRNFLPPGMASNPSPPPTPFVAPPFATNSPHPPPPEPPTASLGPSQPL FT APHHPTPPTNPPAPASSSAPPELSLSQNPRSETSSPPSQPSPSPSQSSPLPAGPPPHPS FT DGSCRCADCQPEHQHLRSINEFGALNQNPAPTPSPLLNRSEPKADLPGSDLLSDPSCVG FT PVVEFECLFPGVYHNSNGTFLTRQRAQASSSAPLPAKRCLLTSISPQLGVPEATLWNYL FT CEMLPDSLLDNPEIRNYGLSTDHLTALASRLNFECVIHTGHTTLPYSCVGASTRVQITF FT HPGPPKHFSPNIRLSASAPGSNPSKSPLVRAALRFQLNGDFLPFMNSHKHKVSVPHAKN FT LVSNMKNGFDGITSQLSESSGRSPKQKLLELDATIDVAFPREVDVIHIAGFPGCGKSHP FT VQKLLQTKAFRHFRLSVPTNELRTEWKSDMSLPESEIWRLCTWETSLFKSSSILVIDEI FT YKLPRGYLDLALLADPSTSLVILLGDPLQGEYHSSHPSSSNNRLESETSRLSKYIDCYC FT WWTYRCPRAVADLFGVKTFNTEQGFIRGELSHPQGLPNLVNSIATATTMQNLGHHALTI FT SSSQGMTYSSPTTILLDRHSTLLSPQNCFVALTRSRKGIIFIGNMYQASGYFGTSYMFT FT QALTGSPVDLMCAFPLYHTLPLIFDPIKSRRQRLVAGDPLPISTSESAIRNYGRLPPHI FT PTDYAKDCFVSSQVVFSEGEDRTLPTLHLPPSRLPLHLLTEPAAPSEVLLSETEPSKSP FT ITLALLGESFEELAAHFLPAHDPELKEIIFADQSSSQFPFLDVPFELSCQPSSLLAASH FT RPASDPTLLVSSIKKRLRFRPSDCPYFISSNDILLGQHLFNSLCRAFNRSPLEVIPFDP FT VLFAECIALNEYAQLSSKTKATIVANASRSDPDWRFTAVRIFAKAQHKVNDGSIFGSWK FT ACQTLALMHDYVIMTLGPVKKYQRILDHQDRPSHIYTHCGKTPAQLSSWCQKFSLDGPS FT LCNDYTSFDQSQHGEAVVLECLKMRRCSIPDNLIQLHLHLKTNISTQFGPLTCMRLTGE FT PGTYDDNTDYNLAVIYSQYQMGATPCMVSGDDSVIFANPPIHPTWPAVENLLHLRFKTE FT STTQPLFCGYYVGPSGCCRNPLALFAKLMITTDKGNLDDTLSSYLYEYSIGHRLGDACL FT SLLPSHLHSYQSACFDFFCRKASPLQKTLLSFEEPSPSLLKKLASSSAWASGPLLAQLD FT NDSLQSLLERSNLPSSHLDARVQRLESELLHSFQ" FT CDS 5536..6114 FT /codon_start=1 FT /product="coat protein CP" FT /db_xref="GOA:B4YUL7" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B4YUL7" FT /protein_id="ACF40327.1" FT /translation="MEELKPISVKQPSIPAPGTKLPPAPGQQSSAIVQPFQVSVADLGV FT SEVNVQITLSSDPTLSQLTAFYRHADLVECSAVLFPNFTSSSNPTHCDLAWVPANSTAS FT PKNILKTYGGNRFTLGGPITANEVISVPLPMNSVNCTIKDSVLYTDSPRLLAHSPAPLT FT AKTIPSGTLVIRGKVRLSSPLPQPLTASS" FT 3'UTR 6115..6290 FT /note="tRNA-like structure with histidine specific FT anticodon; three upstream pseudo-knot domains" XX SQ Sequence 6290 BP; 1225 A; 2373 C; 1223 G; 1469 T; 0 other; gtaattcgtt tccagctcag cccgattcat ttcgccctga gttttctttt ccttaccttg 60 cttagctctc cggccctaag caccttttcc gcttcccagc ttcgctctcc ggcccgaagc 120 tttacctcta acagaccgac tcgtccctct gttaatggac catggccttc cagcttgccc 180 tcgaagccct gtccaccacc tctcaccgag attcttccct gaatccggtt ctgtatcact 240 ccgtgagtcc gctccagcgc tctctcgacc tctttccttg gataatcacc agggacgctc 300 tccccttcct caactcatgc ggcattcctg tctccggatt tggaaccacc ccgcaccccc 360 atgctgtcca caaggccata gagaccttcc tccttttctc ccactggagt tctctggcct 420 ccactctcag ctccgtcatg tttatgaaac cttccaagtt tcgaaaactg gctgccatca 480 acccaaactt cgacgaactc accaactttc gtctcactcc cgccgacacc gttcggtacc 540 cgacgacctc ctcatcactc ccccaacacg agatcgtctt catgcacgac gctctcatgt 600 acttcacccc tcatcaaatc gtcgatcttt tcgaacgttg ccctctgctc aacaggctcc 660 actgcagcct cgttgtccct ccagagagca gcttcacgga tctctctctc ttcccaacca 720 tctacacata ccaactaaac tcgaacaacc tccactacac ccccgaaggg catcacgccg 780 gaagctacga ccaacctcgg tccgccatcc ggtggttgaa gctccgacgc atcaccagcc 840 ccttcttcaa cctgtccgtg accattctgg aatcttgggg ccctgtccac tcgattctca 900 ttcaacgtgg gcttccgatc agcgattctc tcgcgccccc gcacgcatcc ttcaaggtgc 960 cccaggcccg agtgctgcca gaagccacgt ttctcaacca acctctccgc catcggatgg 1020 tcccttccga ggtgtacgac gccctgttca cgtacactcg agccgtccgc accctccgaa 1080 cctccgatcc agccggcttc gtcaggaccc attcaaacaa gccgaagcac gcctgggtca 1140 ctccccaagc gtgggacaac cttcaaacct acgccctcct aaacgcgccg gtacgcccaa 1200 gagtggtgta caacttcttc ctctccccca ttcagaaggc ccatctctac ttggcccagc 1260 acctcaaccc cttcctggta cgagcgcttc cattcttggg cctcgtcctc cctgccttga 1320 aggtgctcac cactggctta ccagtcccca gggtatcgtc ccttcaagtt gctcatcgtc 1380 aactggtcgg gccccacccc gagccctctc ccacagctca ccccattctc cgccaaatcg 1440 ttgcgttctc tcagcagaat cccttctttt tggaactctg ccaaagaact ccgttcctca 1500 acaggttctt ccggtccgct tgtcggccac cgtcggcctt ccgcttggag ctccaacgat 1560 ccacactccc cctcccatcg tggctagctg tgctgctgat ctccatgatc ccagtgatgg 1620 cctctccaac tctcaccctc gtgctgccgc agtcggtcca aagccttcac gacggctatc 1680 acacacacct tcacccctcc gagttcaacc tgagctggcc gctggaatcc ttccacgtgc 1740 ccactcgtcg gaactttctg cccccgggca tggcttccaa cccgagcccg cccccaactc 1800 ccttcgtggc acctcccttc gccaccaact ctccccatcc acctcccccc gagcccccca 1860 ccgcaagcct aggtccgagt cagcccctcg cgcctcatca cccgacgcca ccgacaaacc 1920 cgccagctcc agcgagctct tccgctcccc cggagctctc gttgtcccag aacccccgct 1980 ccgagacctc gagccccccc tctcagccct ctccttctcc ttcccaaagt tccccgcttc 2040 cagccgggcc tccacctcac ccgtctgacg gttcctgcag gtgcgccgac tgccagccag 2100 agcatcagca cctccgctcc ataaacgagt ttggtgcgct caaccaaaat ccagctccca 2160 cccccagtcc cttgctcaac cgttcggagc ctaaggccga tctccctggt tcggacctgc 2220 tctccgatcc gtcttgcgtg ggcccggtcg tggagttcga gtgtctcttt cccggagtct 2280 accataactc aaacggaacc tttctcactc gacaacgggc tcaggccagc tcctccgctc 2340 ccctaccagc caagagatgt ctgctcacat ccatctcacc tcagttaggt gttccggagg 2400 caactctctg gaattacctc tgcgagatgc tgccagacag tctcttggac aacccagaga 2460 tcaggaacta tggtctctcc accgaccacc tcacggcttt ggcgtcccgc ctcaactttg 2520 aatgcgtgat tcacactgga cacacaaccc tcccttacag ctgtgttggt gcatccactc 2580 gcgttcagat cacattccat ccgggcccgc ccaagcactt ctcccccaac atccgtcttt 2640 ccgcctccgc ccctggatcc aacccctcca agtccccact ggttcgggcc gctctccgtt 2700 tccagctgaa cggggacttc cttccgttca tgaactctca caaacacaag gtctcagttc 2760 cccacgccaa gaatcttgtg tccaacatga agaacggctt tgacggcatc acatcccagc 2820 tctctgagtc ctctggccgc tcccccaagc aaaaactcct agagcttgac gcgaccatcg 2880 acgttgcctt ccctcgcgaa gtagacgtga tccacatagc tggtttccct ggctgcggca 2940 aatcccaccc agtccaaaaa ctcctgcaga ccaaggcttt cagacacttc cgcctttctg 3000 tgcccactaa cgagctcaga accgagtgga aatcggacat gtccttgcct gagtccgaaa 3060 tttggcgcct ctgcacctgg gaaaccagcc tcttcaagag ctccagtatt ctcgtgattg 3120 atgagattta caagctcccc cgagggtatt tggatctggc ccttcttgct gacccctcta 3180 catccctcgt tatccttctc ggagatccac tccaaggaga gtaccactcc tctcacccct 3240 cttcatccaa caaccgcctc gagtctgaaa cctctcgcct ctccaagtac attgattgct 3300 attgctggtg gacttaccgc tgcccccggg cagtggccga cctctttggc gtcaagacgt 3360 tcaacaccga gcagggtttc attcgaggtg agctctccca tcctcaaggt cttccgaacc 3420 ttgtcaacag tatagccacc gccacaacca tgcaaaacct tggccatcac gcgctcacga 3480 tctcaagcag ccaaggcatg acctactctt ctccgactac catcctcctc gaccgccaca 3540 gcaccctgct ttcgcctcaa aactgttttg tggccctcac ccgcagccgc aagggcatca 3600 tcttcatcgg taacatgtac caagcgtccg gttactttgg cacttcgtac atgttcaccc 3660 aagcactcac aggctctccg gtcgacctga tgtgtgcttt tcctttgtat cacaccctgc 3720 cgctcatctt cgaccctatc aaatcccgtc gacaacgact ggtcgccggc gatccccttc 3780 ccatttccac ctccgaatct gccatacgca actatggccg actcccacct cacattccca 3840 cagactacgc caaagactgc tttgtctcct cacaagtggt tttctccgaa ggcgaggacc 3900 gcaccttgcc taccctccac cttccaccaa gtcgcctccc actccacttg ctcactgaac 3960 cggctgcccc ttccgaagtc ctcctctccg agaccgagcc ctccaagagc cccatcacct 4020 tggccctcct cggagagtct ttcgaggagc tggcagctca cttccttccc gcacacgacc 4080 ccgaactcaa ggaaatcatc tttgctgacc agagcagctc ccagtttccc ttccttgatg 4140 ttcccttcga actgtcgtgc caaccatctt ccctcctcgc agcttctcac aggcctgctt 4200 cggatccgac tcttctggtg tcctccatca agaagcgact cagattcagg ccatccgact 4260 gcccctactt catttcctcg aatgacattc tactggggca gcacctcttc aactccctct 4320 gcagggcgtt caacaggagc cccctggaag tcattccctt tgatcctgtg ctgttcgcgg 4380 agtgcattgc tctcaacgag tacgcacagc tctcttccaa aaccaaggcc accatcgtcg 4440 ccaatgcttc tcgctccgac ccggactggc gcttcaccgc cgttcggata tttgcgaaag 4500 ctcagcacaa ggtcaatgac gggtccattt ttgggtcctg gaaagcttgc cagactctag 4560 ctctgatgca cgactacgtc atcatgacgc tcggccctgt caagaaatac cagcgaattt 4620 tggaccacca agatcgcccc tcacacatct acacccactg cggcaagacc ccagctcagc 4680 tttcttcgtg gtgccagaaa ttttccctgg atggtccctc cctgtgcaac gactacactt 4740 ctttcgatca gagtcaacac ggagaagccg tcgttctcga gtgtctcaag atgcgccggt 4800 gcagtatccc ggacaacctc atccagcttc acctgcacct gaagaccaac atatccaccc 4860 agttcggtcc gctcacctgc atgcgcttaa ctggagagcc cggcacttat gatgacaaca 4920 cggactacaa tcttgctgtc atctactctc agtatcagat gggcgccacc ccctgcatgg 4980 tctctggtga cgactccgtc atcttcgcca acccaccgat ccatcccact tggccagccg 5040 ttgagaacct ccttcatctt cgattcaaaa ctgagtcaac cacccaacct ctgttctgcg 5100 gttactatgt cggaccctcc ggctgctgcc gcaaccctct cgcccttttc gccaagctca 5160 tgatcaccac cgacaagggc aatcttgacg acactctctc ctcatacttg tatgagtact 5220 cgatcggtca tcgtctcggc gacgcctgcc tcagtctctt gcccagccat ctccactctt 5280 accaaagcgc ctgcttcgat ttcttctgtc ggaaggcctc cccattgcag aaaactcttc 5340 tcagctttga agaaccttct ccctctttgt tgaagaagct cgcctcgagt tcggcctggg 5400 cctctggtcc acttctagcc caactcgaca acgattcgct acaaagcctt cttgaacgct 5460 ccaatctccc aagctcccat cttgacgcca gggttcaaag acttgagtct gaattgcttc 5520 actcatttca ataacatgga agaactcaag ccgatcagcg tcaagcagcc ctctatcccg 5580 gcacctggca ccaagctgcc ccctgctcct ggccagcaat cgtccgcgat cgtccaacct 5640 tttcaggtct ctgtagctga cctcggcgtc tccgaagtca acgtgcagat aaccctctcg 5700 tccgatccca ccctttctca gctcaccgct ttctaccgcc acgctgatct cgtcgagtgc 5760 tccgccgttc tgtttccgaa tttcacttcc tcttccaacc caacccattg cgacctcgcc 5820 tgggtgcctg cgaattcgac tgcgtctccc aagaacatct tgaagaccta cggcggcaac 5880 cgcttcaccc tcggcggccc gatcaccgcc aacgaggtca tatccgtgcc cctgcccatg 5940 aactctgtca actgcaccat caaggacagc gttctgtaca cggactcccc ccgactcttg 6000 gctcactcgc ccgcccctct cacggccaag acgatcccct ctggcacctt agtcattcgt 6060 ggcaaggttc gcctttcttc tcccctccct cagcctctca cagcttcttc gtgagggcgg 6120 cgcatgccat aatgcgcagt gtttcggctt ccacttaaat cgaaagccaa cccctccagc 6180 ccgtctggtt gttccctgga tcactacgtc aacttgcttt gtgtaagcaa gccgttggga 6240 acacaaaatt gtgaggagtt cgaatctccc cctgtcccgg gtagggaacc 6290 //