Dbfetch

Dbfetch

ID   EU647743; SV 1; linear; mRNA; STD; VRL; 613 BP.
XX
AC   EU647743;
XX
DT   03-MAY-2010 (Rel. 104, Created)
DT   03-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sugarcane yellow leaf virus isolate CBV94101TN putative aphid transmission
DE   factor mRNA, partial cds; and capsid protein and movement protein mRNAs,
DE   complete cds.
XX
KW   .
XX
OS   Sugarcane yellow leaf virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-613
RA   Viswanathan R., Balamuralikrishnan M., Karuppaiah R.;
RT   "Sugarcane yellow leaf virus causing yellow leaf disease in India:
RT   Molecular characterization and identification of three genotypes";
RL   Unpublished.
XX
RN   [2]
RP   1-613
RA   Viswanathan R., Balamuralikrishnan M., Karuppaiah R.;
RT   ;
RL   Submitted (10-APR-2008) to the INSDC.
RL   Plant Pathology, Sugarcane Breeding Institute, Sugarcane Main Road,
RL   Sugarcane, Coimbatore, Tamil Nadu 641 007, India
XX
DR   MD5; d8123c7413db873556e154bdc3817a3a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..613
FT                   /organism="Sugarcane yellow leaf virus"
FT                   /host="Saccharum sp. hybrid cv. CoV 94101"
FT                   /isolate="CBV94101TN"
FT                   /mol_type="mRNA"
FT                   /country="India"
FT                   /collection_date="11-Apr-2007"
FT                   /db_xref="taxon:94290"
FT   CDS             1..>613
FT                   /codon_start=1
FT                   /transl_except=(pos:589..591,aa:OTHER)
FT                   /product="putative aphid transmission factor"
FT                   /note="ORF5; readthrough protein"
FT                   /db_xref="GOA:D6BJK9"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:D6BJK9"
FT                   /protein_id="ACH42788.1"
FT                   /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG
FT                   GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT                   TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT
FT                   SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPKXVSDAPPT"
FT   CDS             1..591
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:B7U4M6"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:B7U4M6"
FT                   /protein_id="ACH42786.1"
FT                   /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG
FT                   GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT                   TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT
FT                   SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPK"
FT   CDS             32..484
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:B7U4K9"
FT                   /protein_id="ACH42787.1"
FT                   /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT                   ATGMFSLSRLTISRPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSQFSITHAPPT
FT                   QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKPSRPPSSGGKTS"
XX
SQ   Sequence 613 BP; 177 A; 169 C; 145 G; 122 T; 0 other;
     atgaatacgg gcgctaaccg ttcacgaagg aatgtcagaa gacgcgctaa ccgtcgtcga        60
     cagactcggc cagtggtcgt ggtccggcct gccgcaggac ctagacgagt acgacgacgt       120
     agagcacgtg ttggaggaaa cgctgtgcga ggaccgggag gaagaagcaa cagggatgtt       180
     ctcactttca cgattgacga tctcaaggcc aactcaaccg ggatcctcaa attcggaccg       240
     aacctatctc agtacgcagc gttcaacaat ggcttactca aagcctacca tgagtataaa       300
     atcacaagtc tcacaattca gtataactca tgctcctccg acgcaactcc aggtgcaatc       360
     gcacttgaag tggatacatc ctgctcccaa acaacaacag gctccaagat tactagcttc       420
     cccgtcaaga ggaacgccaa gaaaaccttc ccggccccct tcatcagggg gaaagacttc       480
     atgactacat cagctgatca gttttggctt ttgtacaaag ggaatggaga cggaagccta       540
     gcaggacaat tcgtctgccg atttgaatgt ttattccaga atcccaaata ggtaagcgac       600
     gctcccccaa cac                                                          613
//