Dbfetch
ID EU647735; SV 1; linear; mRNA; STD; VRL; 613 BP. XX AC EU647735; XX DT 03-MAY-2010 (Rel. 104, Created) DT 03-MAY-2010 (Rel. 104, Last updated, Version 1) XX DE Sugarcane yellow leaf virus isolate CBD1135 putative aphid transmission DE factor mRNA, partial cds; and capsid protein and movement protein mRNAs, DE complete cds. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-613 RA Viswanathan R., Balamuralikrishnan M., Karuppaiah R.; RT "Sugarcane yellow leaf virus causing yellow leaf disease in India: RT Molecular characterization and identification of three genotypes"; RL Unpublished. XX RN [2] RP 1-613 RA Viswanathan R., Balamuralikrishnan M., Karuppaiah R.; RT ; RL Submitted (10-APR-2008) to the INSDC. RL Plant Pathology, Sugarcane Breeding Institute, Sugarcane Main Road, RL Sugarcane, Coimbatore, Tamil Nadu 641 007, India XX DR MD5; 3e429e3f6a7331ffa4eeeecb5950319d. XX FH Key Location/Qualifiers FH FT source 1..613 FT /organism="Sugarcane yellow leaf virus" FT /host="Saccharum sp. hybrid cv. D1135" FT /isolate="CBD1135" FT /mol_type="mRNA" FT /country="India" FT /collection_date="05-Dec-2007" FT /db_xref="taxon:94290" FT CDS 1..>613 FT /codon_start=1 FT /transl_except=(pos:589..591,aa:OTHER) FT /product="putative aphid transmission factor" FT /note="ORF5; readthrough protein" FT /db_xref="GOA:D6BJI6" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D6BJI6" FT /protein_id="ACH42765.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGLRRVRRRRARVG FT GDAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPKXVSDASPT" FT CDS 1..591 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF3" FT /db_xref="GOA:D6BJI7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D6BJI7" FT /protein_id="ACH42763.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGLRRVRRRRARVG FT GDAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPK" FT CDS 32..484 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q91L36" FT /protein_id="ACH42764.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISRPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKPSRPPSSGGKTS" XX SQ Sequence 613 BP; 176 A; 167 C; 145 G; 125 T; 0 other; atgaatacgg gcgctaaccg ctcacgaagg aatgtcagaa gacgcgctaa ccgtcgtcga 60 cagactcggc cagtggtcgt ggtccggcct gccgcaggac ttagacgagt acgacgacgt 120 agagcacgtg ttggaggaga cgctgtgcga ggaccgggag gaagaagcaa cagggatgtt 180 ctcactttca cgattgacga tctcaaggcc aactcaaccg ggatcctcaa attcggaccg 240 aacttatctc agtacgcagc gttcaacaat ggcttactca aagcctacca tgagtataaa 300 atcacaagtc tcactattca gtataactca tgctcctccg acgcaactcc aggtgcaatc 360 gcacttgaag tggatacatc ctgctcccaa acaacaacag gctccaagat tactagcttc 420 cccgtcaaga ggaacgccaa gaaaaccttc ccggccccct tcatcagggg gaaagacttc 480 atgactacat cagctgatca attttggctt ttgtacaaag ggaatggaga cggaagccta 540 gcaggacaat tcgtctgccg atttgaatgt ttattccaga atcccaaata ggtaagcgac 600 gcttccccaa cac 613 //