ID EU642567; SV 2; linear; genomic RNA; STD; VRL; 2203 BP. XX AC EU642567; XX DT 06-MAY-2008 (Rel. 95, Created) DT 23-JUL-2008 (Rel. 96, Last updated, Version 2) XX DE Cucumber mosaic virus isolate Aligarh segment RNA3, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-2203 RA Afreen B., Khan A.A., Sharma R., Rafiq A., Naqvi Q.A.; RT "Complete RNA 3 sequence of Cucumber mosaic virus sub group II isolate RT infecting Daucus carota"; RL Unpublished. XX RN [2] RP 1-2203 RA Afreen B., Khan A.A., Sharma R., Rafiq A., Naqvi Q.A.; RT ; RL Submitted (13-APR-2008) to the INSDC. RL Department of Botany, Aligarh Muslim University, Aligarh, UP 202002, India XX RN [3] RC Sequence update by submitter RP 1-2203 RA Afreen B., Khan A.A., Sharma R., Rafiq A., Naqvi Q.A.; RT ; RL Submitted (22-JUL-2008) to the INSDC. RL Department of Botany, Aligarh Muslim University, Aligarh, UP 202002, India XX DR MD5; 0409833f5042e144ba524f5acd2fc8cd. DR EuropePMC; PMC3550734; 23637513. DR EuropePMC; PMC3550809; 23730005. DR EuropePMC; PMC3650197; 24426254. DR RFAM; RF01084; TLS-PK3. XX CC On Jul 22, 2008 this sequence version replaced gi:187235555. XX FH Key Location/Qualifiers FH FT source 1..2203 FT /organism="Cucumber mosaic virus" FT /segment="RNA3" FT /host="Daucus carota (carrot)" FT /lab_host="Nicotiana benthamiana" FT /isolate="Aligarh" FT /mol_type="genomic RNA" FT /country="India" FT /isolation_source="infected leaf" FT /note="subgroup: II" FT /db_xref="taxon:12305" FT 5'UTR 1..96 FT CDS 97..936 FT /codon_start=1 FT /product="movement protein" FT /note="cell to cell movement" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:B2ZCT5" FT /protein_id="ACD01991.1" FT /translation="MAFQGSSRTLTQQSSAASSDDLQKILFSPDAIKKMATECDLGRHH FT WMRADNAISARPLVPQVTSNNLLSFSKSGYDAGELGSKGYMSVPQVLCAVTRRVSTDAE FT GSLKIYLADLGDKELSPIHGQCVTLHNHELPALISFQPTYDCRMELVGNRHRCYAEVVE FT RHGYIGYGGTTASVCSNWQAQFSSKNNNYTHAAGGKTLVLPYNRLAEHSKPSAVARLLK FT SQLNNVSSWRYLLPNLALNQNASGHESEILNESPPIAIGSRSASRNNTFRSQVVNGL" FT misc_feature 937..1224 FT /note="intergenic region; IR" FT CDS 1225..1881 FT /codon_start=1 FT /product="capsid protein" FT /note="encapsidation of virus, aphid transmission and host FT identification" FT /db_xref="GOA:B2ZCT6" FT /db_xref="InterPro:IPR000247" FT /db_xref="InterPro:IPR023800" FT /db_xref="InterPro:IPR037137" FT /db_xref="UniProtKB/TrEMBL:B2ZCT6" FT /protein_id="ACD01992.2" FT /translation="MDKSGSPNASRTSRRRRPRRGSRSASGADAGMRALTQQMLRLNKT FT LAIDRPTLNHPTFVGSESCAPGYPFTSITLKPPGIEKGSYFGRRLSLPDSVTDYDKKLV FT SRIQIRINPLPKFDSTVWVTVRKVPSSSDLSVAAISAMFGDGNSPVLVYQYAASGVQAN FT NKLLYDLSEMRAEIGDMSKYTVLVKQKDDNLEKDEMVFHVDVEHQRIPISRMLPT" FT 3'UTR 1882..2203 XX SQ Sequence 2203 BP; 503 A; 513 C; 530 G; 657 T; 0 other; gtaatcttac cactttcttt cacgtcgcgt cgcgtcagtc cacgctgtgt gtgtgtgtgt 60 gttagttagt gtgtcgtgtt tagattacgg aaggttatgg ctttccaagg tagcagtagg 120 acgttaactc aacagtcctc ggcggcgtcg tctgacgact tacagaagat attattcagc 180 cccgatgcca tcaagaagat ggctactgag tgtgacctag gtcgacatca ttggatgcgc 240 gcggataacg ccatctctgc cagacctctc gttccccaag taaccagtaa caatttattg 300 tctttctcta aatctgggta tgatgccggt gaattgggct ctaaaggcta tatgagcgtt 360 cctcaagtgc tgtgtgccgt taccaggagg gtttctacgg atgctgaggg ttctttgaaa 420 atttatttgg ctgacctagg tgataaagaa ttatccccaa ttcatgggca atgtgttact 480 ttacataatc atgagctccc tgctttgata tctttccaac ctacctacga ttgccgcatg 540 gaattagttg gcaatcggca tcgatgttac gcggaagtcg ttgagagaca tggttatatt 600 ggttacggtg gtaccactgc tagcgtgtgt agtaactggc aagctcagtt ttcttcaaag 660 aataataatt acacacacgc cgctggtggt aagactcttg tgttgcctta caacagatta 720 gctgagcatt cgaaaccgtc agccgtcgct cgcctgttga agtcgcagtt aaacaacgtt 780 agctcatggc gctatctttt gccgaacctt gctcttaatc aaaatgcgtc tgggcacgag 840 tccgagattt taaacgaaag ccctcccatc gctataggga gtcggtccgc gtcccgtaac 900 aataccttca gatcgcaggt ggttaacggt ctttagtgtt ttgttacgtt gtacctatgt 960 atatatatac tacgtttatc ttccgtatgt aaatacatgt gagtctagag tcccgtgtga 1020 gttgtaacgg tagacatctg tgacgcgaag ccgcctgaag atttcccatc tggggttagt 1080 aagtccacat cacagtttta aggttcaatt ccttttgctc cctgttgggc ccccttactt 1140 tctcatggat gcttctccgc gagttagcgt ttagttgttt acttgagtcg tgcgtttctt 1200 tgtattttgc gtcttagtgt acctatggac aaatctggat ctcccaatgc tagtagaacc 1260 tcccggcgtc gtcgcccgcg tagaggttct cggtccgctt ctggtgcgga tgcagggatg 1320 cgtgctttga ctcagcagat gctgcgactc aataaaaccc ttgccattga tcgtcccact 1380 cttaaccacc caaccttcgt gggtagtgaa agttgtgcac ccggttaccc tttcacatct 1440 attaccctga aaccgcctgg aattgagaaa ggttcatatt ttggtagaag gttgtctttg 1500 ccagattcag tcacggacta tgataagaag cttgtttcgc gcattcaaat caggattaat 1560 cctttgccga aatttgattc taccgtgtgg gttacagttc ggaaagtacc ttcatcatcc 1620 gatctttccg tcgccgccat ctctgctatg tttggcgatg gtaattcacc ggttttggtt 1680 tatcagtatg ctgcgtccgg agttcaggcc aacaataagt tactttatga cctgtccgag 1740 atgcgcgctg agatcggcga catgagtaag tacaccgtcc tggttaagca gaaagacgat 1800 aatctagaga aggacgagat ggtatttcat gttgacgtcg agcatcaacg aattcctatc 1860 tcacggatgc tcccgactta gtccgtgtgt ttaccggcgt ccgaagacgt taaactacac 1920 tctcaatcgc gagtgctgag ttggtagtat tgctccaaac tgcctgaagt ccctaaacgt 1980 gttgttgcgc ggggaacggg ttgtccatcc agcttacggc taaaatggtc agtcgtgtct 2040 ttcacacgcc gatgtcttac aagatgtcga ggtacccatt gaaatcatct cctagatttc 2100 ttcggaaggg cttcgtgaga agctcgtgca cggtaataca ctgatattac caagagtgcg 2160 ggtatcgcct gtggttttcc acaggttctc cataaggaga cca 2203 //