ID EU636991; SV 1; linear; genomic RNA; STD; VRL; 5668 BP. XX AC EU636991; XX DT 21-JUN-2010 (Rel. 105, Created) DT 28-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Beet western yellows virus from China: Inner Mongolia, complete genome. XX KW . XX OS Beet western yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5668 RX DOI; 10.1016/j.virol.2010.06.045. RX PUBMED; 20667575. RA Han Y.H., Xiang H.Y., Wang Q., Li Y.Y., Wu W.Q., Han C.G., Li D.W., RA Yu J.L.; RT "Ring structure amino acids affect the suppressor activity of melon RT aphid-borne yellows virus P0 protein"; RL Virology 406(1):21-27(2010). XX RN [2] RP 1-5668 RA Xiang H., Wang W., Han C., Li D., Yu J.; RT "A novel polerovirus was involved in yellowing disease of sugar beet in RT China"; RL Unpublished. XX RN [3] RP 1-5668 RA Han C.; RT ; RL Submitted (11-APR-2008) to the INSDC. RL Plant Pathology, China Agricultural University, No.2 Yuanmingyuan West RL Road, Haidian District, Beijing 100193, China XX DR MD5; 21db2275e4761be12f4b451ac4e5326c. DR EuropePMC; PMC3784903; 24426276. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC5120529; 27876078. DR RFAM; RF01074; RF_site1. XX FH Key Location/Qualifiers FH FT source 1..5668 FT /organism="Beet western yellows virus" FT /host="sugar beet" FT /mol_type="genomic RNA" FT /country="China:Inner Mongolia" FT /db_xref="taxon:12042" FT 5'UTR 1..28 FT CDS 29..745 FT /codon_start=1 FT /product="P0 protein" FT /note="ORF0" FT /db_xref="GOA:D7EZI1" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:D7EZI1" FT /protein_id="ACF48397.1" FT /translation="MLFETYNHILVFRANRFLSASDRILNTSEFLIKYFVLFVQHDNIN FT ANVFLARLPLLLSEQLHGDFSYVPGHRQRIRLARLHRACDAPLHSSSAVNLRLPPLQDV FT AGLFLARHASRSMGERINKHQDLLARGKEEFNRFLSVWCAGVERDLSQIPKTNIERDFL FT CMELIDLGFALRALVLGPRVHSRNAYTRVAVHINRMYGESSGLDFWRLANFPIQCWPFH FT PERHFADSVVQKTLQM" FT CDS join(150..1477,1477..3331) FT /codon_start=1 FT /ribosomal_slippage FT /product="P1 protein-P2 fusion protein" FT /note="ORF1-ORF2" FT /db_xref="GOA:D7EZI2" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:D7EZI2" FT /protein_id="ACF48399.1" FT /translation="MTTSMLTFFLLASLCSLASSYTGTLVMSPGIANASDWPGYTEPVM FT PHCTPQVQLTYDCPPSKTLQDYSSHDMLLEVWERGLINTRTFWQEAKKNLTDFYQSGVQ FT VLSATSHKFLKQTLRGISYVWSSLIWASLCALWYLVREYTVETLILGWLYILTVCMVRA FT VAWTFGASPIFLFNVGLSTLRGISRIPWFRRPYKCEKSVEGFLSFKIPQSPPKHSVLQV FT QHPDGSHAGYATCVMLYNGTTGLLTARHVVSSGCKVTSTRNGNKIPLSEFKVETESSTR FT DLLLMAGPPNWEGTLACKAVHFQTAPYLCKCKATFFAFNEGAWESSNAEITGASPCRNF FT VSVLSITDPGHSGTPYFNGKTLLGVHVGGAKEENANYMAPIPPRAGLTTPNYVFETTAP FT QGRIFTEEEILELAEDFSYSEIHSIIAAQKGKAHYDMETTGGSGKREGGRARRNNRNPQ FT RKHPHSRRKQWRKSPPSCCSYYTEGTLGPRCQAGHIHAPDDEGRPGCWCEIPGHDCFFR FT RYQRDQRSHSAEDRCSFDREAGRGDPGREGHEETSESRAKKICEQAENFCQYFSSLYRW FT ESGSGKEAPGFEQTGSLPQFYHPKQKGESRWGAKVLQLHPELEAHTRGFGWPQFGAQAE FT LKSLRLQAARWLERAQQVKIPSSEERERVIRKCCEAYKNVKSNGPNATRGNKLSWGNFL FT EDFKQAVFSLEFDAGIGVPYVAYGKPTHRGWVENHELLPILARLTFIRLQKMLEVRFED FT LTPEQLVQQGLCDPIRVFVKGEPHKQSKLDEGRYRLIMSVSLVDQLVARVLFQNQNKRE FT ITLWRAVPSKPGFGLSTDEQVAEFIQLLSAQVQVSPPQLINNWRQHLVATDCSGFDWSV FT SDWLLEDDMEVRNRLTTDLNETTSKLRAAWLKCISNSILCLSDGTLLAQRVPGVQKSGS FT YNTSSSNSRIRVMAAFHCGAEWAMAMGDDALESVSTDLGKYAALGFKVEESSKLEFCSH FT IFEREDLAIPVNKAKMIYKLIHGYEPECGNAEVLVNYLTACFAILNELRSDPQMVQTLY FT TWLVEPVQPQNN" FT CDS 150..2057 FT /codon_start=1 FT /product="P1 protein" FT /note="ORF1" FT /db_xref="GOA:D7EZI3" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:D7EZI3" FT /protein_id="ACF48398.1" FT /translation="MTTSMLTFFLLASLCSLASSYTGTLVMSPGIANASDWPGYTEPVM FT PHCTPQVQLTYDCPPSKTLQDYSSHDMLLEVWERGLINTRTFWQEAKKNLTDFYQSGVQ FT VLSATSHKFLKQTLRGISYVWSSLIWASLCALWYLVREYTVETLILGWLYILTVCMVRA FT VAWTFGASPIFLFNVGLSTLRGISRIPWFRRPYKCEKSVEGFLSFKIPQSPPKHSVLQV FT QHPDGSHAGYATCVMLYNGTTGLLTARHVVSSGCKVTSTRNGNKIPLSEFKVETESSTR FT DLLLMAGPPNWEGTLACKAVHFQTAPYLCKCKATFFAFNEGAWESSNAEITGASPCRNF FT VSVLSITDPGHSGTPYFNGKTLLGVHVGGAKEENANYMAPIPPRAGLTTPNYVFETTAP FT QGRIFTEEEILELAEDFSYSEIHSIIAAQKGKAHYDMETTGGSGNGKAAAPAETTAIRK FT ESTHTAGESSGVKVHQAAVPTTQKEHSAQDAKQATYMPPMMREGQAVGAKSPATTASSD FT AISEIKEAILRKIDVRSIEKQVVETLAEKAMKKPRRAGRRRSANRQKTSANTSAPSTGG FT NQGPEKKPPVLNKPEASPSFTTLNKRANRVGEQKSSSYTQSWRPTRGASGGPSSGLRRN FT " FT misc_feature 3332..3532 FT /note="intergenic non-coding region (NCR)" FT CDS 3533..5545 FT /codon_start=1 FT /transl_except=(pos:4139..4141,aa:OTHER) FT /product="P3-P5 readthrough protein" FT /note="ORF3-ORF5" FT /db_xref="GOA:D7EZI4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:D7EZI4" FT /protein_id="ACF48402.1" FT /translation="MNTVVGRRTINGRRRPRRQARRTQRNQPVVVVQAPRSTRRRNRRR FT RGGSNRSRGVIPARGAGSGETFVFSQDNLAGSSSGSITFGPSLSVCPAFSDGILKAYHE FT YKITLVILEFVSEASSQSSGSIAYELDPHCKLNSLSSTINKFGITKPGRRAFTASFING FT VDWHDVAKDQFRILYKGNGSSSIAGSFRITIKCQFHNPKXVDAEPSPSPGPSPSPQPTP FT QKKYRFIVYTGVPVTRIMAQSTDDAISLYDMPSQRFRYIEDENMNWTNLDSRWYSQTSL FT KAVPMIIVPVPQGEWTVEISMEGYQPTSSTTDPNKDKQDGLIAYNDDFKEGWNVGVYNN FT VEITNNKADNTLKYGHPDMELNGCHFNQGQCLERDGDLTCHLKTTGDNASFFIVGPAVQ FT KQSKYNYAVSYGAWTDRMMEIGMIAIALDEQGSSGSAKIKRPKRAGHSMAVSTCETISF FT PKNENFEESNTSQRQDFNTPLTHGEGSDNLEVGVGGLPLPVENIPDFDGDDPWSNISTR FT KPQEDEAMTSKSGFKPQLKPPGLPRPQPVRTIRNFNPEPDLVEAWRPDVNPGYSKEDVA FT AATVMYGGSVHEGRSMLAKRDQAVLDGRKSWGSSLASTLTGGTLRASAQSEKLAQLTSS FT ERAMFERTKRQQGRTAASELLEELLAGKNPNSSRS" FT CDS 3533..4141 FT /codon_start=1 FT /product="P3 coat protein" FT /note="ORF3" FT /db_xref="GOA:D7EZI5" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:D7EZI5" FT /protein_id="ACF48400.1" FT /translation="MNTVVGRRTINGRRRPRRQARRTQRNQPVVVVQAPRSTRRRNRRR FT RGGSNRSRGVIPARGAGSGETFVFSQDNLAGSSSGSITFGPSLSVCPAFSDGILKAYHE FT YKITLVILEFVSEASSQSSGSIAYELDPHCKLNSLSSTINKFGITKPGRRAFTASFING FT VDWHDVAKDQFRILYKGNGSSSIAGSFRITIKCQFHNPK" FT CDS 3564..4091 FT /codon_start=1 FT /product="P4 movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:D7EZI6" FT /protein_id="ACF48401.1" FT /translation="MDEDDHAGKHDALSATSQWLWSKPLGQHDAEIDDDEEALTGVEEL FT SLPEEQVQARHLFSRKTTSREVPADQSRSGRVYQSAQHSLMEYSRPTMNIRSRWSFWSS FT SPRPLPKAPVPSLTSWTHTVNSIHSPPQLTNSGSQSPGGGRLQRRSSTGLIGTMLPKIN FT SGSSTKAMVLHR" XX SQ Sequence 5668 BP; 1536 A; 1495 C; 1395 G; 1242 T; 0 other; acaaaagaat atagcgagaa accagcgaat gctctttgag acttacaacc acatcctggt 60 tttcagagca aaccgtttct tgtccgcgag cgatcgaatt ttgaacacat ccgaattctt 120 gatcaaatac tttgttcttt tcgttcagca tgacaacatc aatgctaacg tttttcttgc 180 tcgcctccct ctgctcctta gcgagcagtt acacggggac tttagttatg tccccgggca 240 tcgccaacgc atccgattgg ccaggctaca cagagcctgt gatgccccac tgcactcctc 300 aagtgcagtt aacttacgat tgccccccct ccaagacgtt gcaggattat tcctcgcacg 360 acatgcttct agaagtatgg gagagaggat taataaacac caggaccttt tggcaagagg 420 caaagaagaa tttaacagat ttttatcagt ctggtgtgca ggtgttgagc gcgacctctc 480 acaaattcct aaaacaaaca ttgagaggga tttcttatgt atggagctca ttgatttggg 540 cttcgctttg cgcgctttgg tacttggtcc gcgagtacac agtcgaaacg cttatactcg 600 ggtggctgta catattaacc gtatgtatgg tgagagcagt ggcctggact tttggcgcct 660 cgccaatttt cctattcaat gttggccttt ccaccctgag aggcatttcg cggattccgt 720 ggttcagaag accttacaaa tgtgagaaat ccgttgaagg cttcctttcc ttcaagatac 780 cacagtctcc tcccaaacac agtgtgctcc aagtgcaaca cccggatggg tcccacgctg 840 gctacgccac atgcgtgatg ctttacaatg gaacaacagg gcttttgacc gcccgacacg 900 ttgtctcatc cggatgcaag gtcacgtcga cgaggaatgg caacaagatt cctctgtctg 960 agttcaaagt cgaaaccgaa tcatcgacac gtgacttgct actaatggca ggaccaccaa 1020 actgggaggg aacccttgca tgcaaggctg ttcacttcca aacggcaccg tatctctgca 1080 aatgtaaagc caccttcttc gcctttaatg aaggggcttg ggaatcatca aacgcagaga 1140 tcacaggggc atccccctgt cgaaacttcg tctccgtctt gagcatcacc gatccaggac 1200 acagtggcac cccctacttc aatggtaaaa cactattggg tgtccacgtt ggcggagcaa 1260 aggaagagaa tgccaactac atggcaccca ttccccctcg cgctggtttg acaacgccta 1320 attatgtctt cgagacaaca gcgcctcaag gaagaatctt cacagaagag gagattcttg 1380 agctagctga agacttcagc tacagtgaga tacactccat aatagctgcc caaaagggca 1440 aagcccatta cgatatggag accactggtg gctcgggaaa cgggaaggcg gccgcgcccg 1500 ccgaaacaac cgcaatccgc aaagaaagca cccacacagc cggagaaagc agtggcgtaa 1560 aagtccacca agctgctgtt cctactacac agaaggaaca ctcggcccaa gatgccaagc 1620 aggccacata catgcccccg atgatgaggg aaggccaggc tgttggtgcg aaatccccgg 1680 ccacgactgc ttcttcagac gctatcagcg agatcaaaga agccattctg cggaagatcg 1740 atgttcgttc gatcgagaag caggtcgtgg agaccctggc cgagaaggcc atgaagaaac 1800 ctcggagagc agggcgaaga agatctgcga acaggcagaa aacttctgcc aatacttcag 1860 ctccctctac cggtgggaat cagggtccgg aaaagaagcc cccggttttg aacaaaccgg 1920 aagcctcccc cagttttacc accctaaaca aaagggcgaa tcgcgttggg gagcaaaagt 1980 cctccagcta cacccagagc tggaggccca cacgcggggc ttcgggtggc cccagttcgg 2040 ggctcaggcg gaattgaaat ccttgcggct acaagccgcc aggtggctgg aacgcgccca 2100 gcaagttaaa atcccctcgt ctgaagagag ggagcgcgtg ataaggaaat gctgcgaggc 2160 ctacaaaaac gttaaatcca acgggcctaa cgcaacgcga ggaaacaagc tctcctgggg 2220 taacttccta gaggacttta agcaagctgt tttctcgctc gagtttgacg ctggcatagg 2280 agtaccgtac gtcgcgtacg ggaagccaac gcaccgaggg tgggttgaga accatgagtt 2340 gctccccatt ttagctcgcc tgaccttcat ccgcctacag aagatgttgg aggttaggtt 2400 tgaagatctc accccggaac agcttgtgca acaaggactc tgcgatccaa ttcgcgtatt 2460 cgtcaaagga gagccgcaca agcaatccaa acttgatgag gggcgctacc gcctcataat 2520 gagcgtttcc ttggtggacc aactggtagc tcgggtcttg ttccagaacc agaacaagcg 2580 ggaaatcacc ctttggaggg ccgtcccgtc caaacccggt tttggcttgt ctactgacga 2640 gcaagtcgcg gagttcattc aactactctc cgcgcaggtg caagtaagtc ctccccaact 2700 gattaacaat tggaggcaac acctagttgc aactgactgc tccggcttcg actggagcgt 2760 ttcggactgg cttcttgaag atgatatgga agtccgaaac cgcctcacca cggatctgaa 2820 tgagacaaca agcaagcttc gcgctgcttg gttgaaatgt atctccaaca gtatcttgtg 2880 cctttctgat ggcaccctgc ttgcgcagcg tgtgccaggg gtgcagaaat caggaagcta 2940 caacacctcc tcatccaatt cccggattcg agtgatggca gctttccact gtggagctga 3000 gtgggcgatg gcgatgggcg atgacgccct tgagtcagtt agcaccgacc tagggaaata 3060 cgccgcccta ggtttcaaag tcgaggagtc ttcaaaactg gaattctgtt ctcatatttt 3120 tgagcgtgaa gacctcgcca ttccggtgaa caaagccaag atgatataca agttgataca 3180 tggctatgaa ccggaatgtg gaaacgctga ggtacttgtg aactacctga ccgcatgctt 3240 cgcaatctta aatgaattgc ggtcagatcc tcagatggtc caaactctct acacgtggct 3300 ggttgaacca gtacagccac aaaacaatta agggagtata aagaacacta gccgagcaca 3360 cgaaagctgc aagcatcgga agtcaagcct ttcacatcag ccggacacta caaaatagat 3420 tacaaatttc tagcaggatt cgcaacaggc ttcctagccg caatcccaat ctcagtagcc 3480 ggcatctaca tagtctacct taaaatctca tcccacgtgc gaagcatcgt taatgaatac 3540 ggtcgtgggt aggagaacaa tcaatggacg aagacgacca cgcaggcaag cacgacgcac 3600 tcagcgcaac cagccagtgg ttgtggtcca agcccctcgg tcaacacgac gcagaaatcg 3660 acgacgacga ggaggctcta accggagtcg aggagttatc cctgccagag gagcaggttc 3720 aggcgagaca tttgttttct cgcaagacaa cctcgcggga agttccagcg gatcaatcac 3780 gttcgggccg agtctatcag tctgcccagc attctctgat ggaatactca aggcctacca 3840 tgaatataag atcacgttgg tcattttgga gttcgtctcc gaggcctctt cccaaagctc 3900 cggttccatc gcttacgagc tggacccaca ctgtaaactc aattcactct cctccacaat 3960 taacaaattc gggatcacaa agcccgggag gagggcgttt acagcgtcgt tcatcaacgg 4020 ggttgattgg cacgatgttg ccaaagatca attcaggatc ctctacaaag gcaatggttc 4080 ttcatcgata gctggttctt ttagaatcac cataaagtgc caatttcaca accccaaata 4140 ggtagacgcg gaaccgagcc ctagcccagg gccttctccc tctccgcaac ccacacccca 4200 gaagaagtat cgtttcatcg tttacactgg agtcccagtg actcgtataa tggctcaatc 4260 cacggatgat gccatttcct tgtatgacat gccgtcgcaa cggtttcgct acatagagga 4320 tgaaaacatg aactggacga acctcgactc tcgatggtat tcccagactt ctttaaaagc 4380 cgtcccaatg ataatagtac cagtccctca aggcgagtgg actgtggaaa tttcgatgga 4440 ggggtaccaa ccaacctcta gcactacaga tcctaataag gacaaacaag atggtctcat 4500 tgcatataat gatgacttta aggaaggttg gaacgtgggt gtttataaca atgtggagat 4560 aaccaacaac aaggccgaca acactttgaa gtacggccac ccagacatgg agcttaacgg 4620 ttgccacttt aatcaaggac aatgtctgga aagagacgga gatttgacct gtcacctcaa 4680 aacgactggt gacaatgcct ccttctttat agttggaccc gccgtccaga aacaatccaa 4740 gtataactat gccgtttcat acggagcctg gacggatcgg atgatggaga tagggatgat 4800 tgccatagca cttgatgaac aaggctcatc cggttccgca aagatcaaaa gaccaaagag 4860 agcagggcac tccatggcag tctccacttg tgagactata agctttccga agaatgagaa 4920 cttcgaggaa agcaacacta gtcaaagaca agactttaac actcctctca cacacggtga 4980 gggttccgac aatctggaag tcggtgtagg aggcttgccc cttcctgttg aaaacatccc 5040 tgacttcgat ggggacgacc cctggtccaa tatatcgacc aggaaaccac aggaagacga 5100 ggctatgaca tcaaagagtg gctttaagcc ccaattgaag cctcctggtc tgccacgacc 5160 acaaccggtt agaacgattc ggaatttcaa tccagagccg gatttggtcg aagcgtggcg 5220 acctgatgtg aaccccggat attccaagga agacgtggca gcggccactg ttatgtacgg 5280 gggttccgtc catgaaggcc ggtctatgct cgctaaacgc gatcaagctg tattagacgg 5340 ccgcaagagt tggggttcat ctctagcttc caccctcacg ggaggaacgc tcagagcctc 5400 cgctcagtcg gagaagcttg ctcaactcac ttcgagtgaa cgagcaatgt ttgaacgcac 5460 caaacgccag caaggtcgca cagcggcctc agagttattg gaagaacttt tagctggcaa 5520 gaaccctaat tcttccaggt cctgatgaac caatctaaat catcactgtc gagcccgtga 5580 cattaaacgt ggaacgattc cgaaaggata ggcaacgagt gttacccatt gttgggtcac 5640 agaaggactc cttctggcac ttcggtgt 5668 //