ID EU636990; SV 1; linear; genomic RNA; STD; VRL; 5668 BP. XX AC EU636990; XX DT 21-JUN-2010 (Rel. 105, Created) DT 28-SEP-2011 (Rel. 110, Last updated, Version 2) XX DE Beet western yellows virus from China: Gansu, complete genome. XX KW . XX OS Beet western yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5668 RA Xiang H., Wang W., Han C., Li D., Yu J.; RT "A novel polerovirus was involved in yellowing disease of sugar beet in RT China"; RL Unpublished. XX RN [2] RP 1-5668 RA Han C.; RT ; RL Submitted (11-APR-2008) to the INSDC. RL Plant Pathology, China Agricultural University, No.2 Yuanmingyuan West RL Road, Haidian District, Beijing 100193, China XX DR MD5; 70a5f60c82bb10f8b68109c6153c52ea. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF01074; RF_site1. XX FH Key Location/Qualifiers FH FT source 1..5668 FT /organism="Beet western yellows virus" FT /host="sugar beet" FT /mol_type="genomic RNA" FT /country="China:Gansu" FT /db_xref="taxon:12042" FT 5'UTR 1..28 FT CDS 29..745 FT /codon_start=1 FT /product="P0 protein" FT /note="ORF0" FT /db_xref="GOA:D7EZH5" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:D7EZH5" FT /protein_id="ACF48391.1" FT /translation="MLFETYNHILVFRANRFLSASDRILNTSEFLIKYFVLFVQHDNIN FT ANVFLARLPLLLSEQLRGDFSYVPGHRQRHRLARLHRACDAPLHSSSAVDLRLPPLQDV FT AGLFLARYASRSMGERINKHQDLLARGKEEFYRFLSVWCAGAERNLSQTLKTNTERDFL FT CMELVDLGFALRALVLGPRVHSRNAYTRVAVHINRMYGESSGLDFWRLANFPIQYWPFH FT PERHFADSVVQKTLQM" FT CDS join(150..1477,1477..3331) FT /codon_start=1 FT /ribosomal_slippage FT /product="P1 protein-P2 fusion protein" FT /note="ORF1-ORF2" FT /db_xref="GOA:D7EZH6" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:D7EZH6" FT /protein_id="ACF48393.1" FT /translation="MTTSMLTFFLLASLCSLASSYAGTSVMSPGIANATDWPGYIEPVM FT PHCTPQVQLTYDCPPSKTLQDYSSHDMLQEVWGRGLTNTRTFWQEAKRNFIDFYQSGVQ FT VLSATSHKLLKQTLRGISYVWSSLIWASLCALWYLVREYTVETLILGWLYILTVCMVKA FT VAWTFGASPIFLFNIGLSTLRGISRILWFRRPYKCEKSVEGFLSFKIPQSPPKHSVLQV FT QHPDGSHAGYAKCVMLYNGTTGLLTARHVVSSGCKVTSTRNGNKIPLSEFKVETESSTR FT DLLLMAGPPNWEGTLACKAVHFQTAPYLCKCKATFFAFNEGAWESSNAEIAGASPCRNF FT VSVLSITDPGHSGTPYFNGKTLLGVHVGGAKEENANYMAPIPPRAGLTTPNYVFETTAP FT QGRIFTEEEILELAEDFSYSEIHSIMAAQKGKAHYDMETTGGSGKREGGRARRNNRNPQ FT RKHPHSRRKQWRKSPPSCCSYYTEGTLGPRCQAGHIHAPDDEGRPGCWCEIPGHDCFFR FT RYQRDQRSHSAEDRCSFDREAGRGDPGREGHEETPESRAKKICEQAENFCQYFSSLYRW FT ESGSGKEAPGFEQTGSLPQFYHPKQKGESRWGAEVLQLHPELEAHTRGFGWPQFGAQAE FT LKSLRLQAARWLERAQQVKIPSSEERERVIRKCCEAYKNVKSNGPNATRGNKLSWGNFL FT EDFKQAVFSLEFDAGIGVPYVAYGKPTHRGWVENHELLPILARLTFIRLQKMLEVRFED FT LTPEQLVQQGLCDPIRVFVKGEPHKQSKLDEGRYRLIMSVSLVDQLVARVLFQNQNKRE FT ITLWRAVPSKPGFGLSTDEQVAEFVQLLSAQVQVSPPQLINNWRQHLVATDCSGFDWSV FT SDWLLEDDMEVRNRLTTDLNETTSKLRAAWLKCISNSVLCLSDGTLLAQRVPGVQKSGS FT YNTSSSNSRIRVMAAFHCGAEWAMAMGDDALESVSTDLGKYAALGFKVEESSKLEFCSH FT IFEREDLAIPVNKAKMIYKLIHGYEPECGNAEVLVNYLTACFAILNELRSDPQMVQTLY FT TWLVEPVQPQNN" FT CDS 150..2057 FT /codon_start=1 FT /product="P1 protein" FT /note="ORF1" FT /db_xref="GOA:D7EZH7" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:D7EZH7" FT /protein_id="ACF48392.1" FT /translation="MTTSMLTFFLLASLCSLASSYAGTSVMSPGIANATDWPGYIEPVM FT PHCTPQVQLTYDCPPSKTLQDYSSHDMLQEVWGRGLTNTRTFWQEAKRNFIDFYQSGVQ FT VLSATSHKLLKQTLRGISYVWSSLIWASLCALWYLVREYTVETLILGWLYILTVCMVKA FT VAWTFGASPIFLFNIGLSTLRGISRILWFRRPYKCEKSVEGFLSFKIPQSPPKHSVLQV FT QHPDGSHAGYAKCVMLYNGTTGLLTARHVVSSGCKVTSTRNGNKIPLSEFKVETESSTR FT DLLLMAGPPNWEGTLACKAVHFQTAPYLCKCKATFFAFNEGAWESSNAEIAGASPCRNF FT VSVLSITDPGHSGTPYFNGKTLLGVHVGGAKEENANYMAPIPPRAGLTTPNYVFETTAP FT QGRIFTEEEILELAEDFSYSEIHSIMAAQKGKAHYDMETTGGSGNGKAAAPAETTATRK FT ESTHTAGESSGVKVHQAAVPITRKEHSAQDAKQATYMPPMMRGGQAVGAKSPAMTASSD FT AISEIKEAILRKIDVRSIEKQVVETLAEKAMKKPRRAGRRRSANRQKTSANTSAPSTGG FT NQGPEKKPPVLNKPEASPSFTTLNKRANRVGEQKSSSYTQSWRPTRGASGGPSSGPKRN FT " FT misc_feature 3332..3532 FT /note="intergenic non-coding region (NCR)" FT CDS 3533..5545 FT /codon_start=1 FT /transl_except=(pos:4139..4141,aa:OTHER) FT /product="P3-P5 readthrough protein" FT /note="ORF3-ORF5" FT /db_xref="GOA:D7EZH8" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:D7EZH8" FT /protein_id="ACF48396.1" FT /translation="MNTVVGRRTINGRRRPRRQARRTQRNQPVVVVQAPRSTRRRNRRR FT RGGSNRSRGVIPARGAGSGETFVFSQDNLAGSSSGSITFGPSLSVCPAFSDGILKAYHE FT YNITLVILEFVSEASSQSSGSFAYELDPHCKLNSLSSTINKFGITKPGRRAFTASFING FT VDWHDVAKDQFRILYKGNGSSSIAGSFRITIKCQFHNPKXVDAEPSPSPGLSPSPQPTP FT QKKYRFIVYTGVPVTRIMAQSTDDAISLYDMPSQRFRYIEDENMNWTNLDSRWYSQTSL FT KAVPMIIVPVPQGEWTVEISMEGYQPTPSTTDPNKDKQDGLIAYNDDFKEGWNVGVYNN FT VEITNNKADNTLKYGHPDMELNSCHFNQGQCLERDGDLTCHLKTTGDNASFFIVGPAVQ FT KQSKYNYAASYGAWTDRMMEIGMIAIALDEQGSSGSTKIKRPKRAGHSMAVSTWETISF FT PKNENFEESSTSQRQDFNTPLTHGESPDNLEVGVGGLPLPVENIPDFDGDDLWSNISTR FT KPQEDEAMTSKSGFKPQLKPPGLPRPQPVRTIRNFNPEPDLVEAWRPDVNPGYSKEDVA FT AATVMYGGSVHEGRSMLAKRDQAVLDGRKSWGSSLASTLTGGTLRASAQSEKLAQLTSS FT ERAMFERTKRQQGRTAASELLGELLAGKNPNSSRS" FT CDS 3533..4141 FT /codon_start=1 FT /product="P3 coat protein" FT /note="ORF3" FT /db_xref="GOA:D7EZH9" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:D7EZH9" FT /protein_id="ACF48394.1" FT /translation="MNTVVGRRTINGRRRPRRQARRTQRNQPVVVVQAPRSTRRRNRRR FT RGGSNRSRGVIPARGAGSGETFVFSQDNLAGSSSGSITFGPSLSVCPAFSDGILKAYHE FT YNITLVILEFVSEASSQSSGSFAYELDPHCKLNSLSSTINKFGITKPGRRAFTASFING FT VDWHDVAKDQFRILYKGNGSSSIAGSFRITIKCQFHNPK" FT CDS 3564..4091 FT /codon_start=1 FT /product="P4 movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:D7EZI0" FT /protein_id="ACF48395.1" FT /translation="MDEDDHAGKHDALSATSQWLWSKPLGQHDAEIDDDEEALTGVEEL FT SLPEEQVQARHLFSRKTTSREVPADQSRSGRVYQSAQHSLMEYSRPTMNIISRWSFWSS FT SPRPLPKAPVPSLTSWTHTVNSIHSPLQLTNSGSQSPGGGRLQRRSSTGLIGTMSPRIN FT SGSSTKAMVLHR" FT 3'UTR 5546..5668 XX SQ Sequence 5668 BP; 1517 A; 1489 C; 1411 G; 1251 T; 0 other; acaaaagaat atagcgagaa accagcgaat gctctttgag acttacaacc acattctagt 60 cttcagagcc aaccgtttct tgtccgcgag cgatcgaatt ttgaatacat ctgaattctt 120 gatcaaatat tttgttcttt tcgttcagca tgacaacatc aatgctaacg tttttcttgc 180 tcgcctccct ctgctcctta gcgagcagtt acgcggggac ttcagttatg tccccgggca 240 tcgccaacgc cacagattgg ccaggctaca tagagcctgt gatgccccac tgcactcctc 300 aagtgcagtt gacttacgat tgccccccct ccaagacgtt gcaggattat tcctcgcacg 360 atatgcttca agaagtatgg gggagaggat taacaaacac caggaccttt tggcaagagg 420 caaagaggaa ttttatagat ttctatcagt ctggtgtgca ggtgctgagc gcaacctctc 480 acaaactctt aaaacaaaca ctgagaggga tttcttatgt atggagctcg ttgatttggg 540 cttcgctttg cgcgctttgg tacttggtcc gcgagtacac agtcgaaacg cttatactcg 600 ggtggctgta catattaacc gtatgtatgg tgaaagcagt ggcctggact tttggcgcct 660 cgccaatttt cctattcaat attggccttt ccaccctgag aggcatttcg cggattctgt 720 ggttcagaag accttacaaa tgtgaaaagt ccgttgaggg cttcctttct ttcaagatac 780 cacagtctcc ccccaaacac agtgtgctcc aagtgcaaca cccggatggg tcccacgctg 840 gctacgccaa atgcgtgatg ctttacaatg gaacaacagg gcttttgacc gcccgacacg 900 ttgtctcatc cggatgcaag gttacgtcga cgaggaatgg caacaagatt cctctgtctg 960 agtttaaagt cgaaactgaa tcatcgacac gtgacttgct actaatggca ggaccaccaa 1020 actgggaggg aacccttgca tgcaaggctg ttcacttcca aacagcaccg tatctctgca 1080 aatgtaaagc caccttcttc gcctttaatg aaggggcttg ggaatcatca aacgcagaga 1140 tcgcaggggc atccccctgt cgaaactttg tctccgtctt gagcatcacc gatccaggac 1200 acagtggcac cccctacttc aatggtaaaa cactgttggg cgtccacgtt ggcggagcaa 1260 aggaagagaa tgccaactac atggcaccca ttccccctcg cgctggtttg acaacgccta 1320 attatgtctt cgagacaaca gcgcctcaag gaagaatctt cacagaagag gagattcttg 1380 agctagctga agacttcagc tacagtgaga tacactccat aatggctgcc caaaagggca 1440 aggcccatta cgacatggag accactggtg gctcgggaaa cgggaaggcg gccgcgcccg 1500 ccgaaacaac cgcaacccgc aaagaaagca cccacacagc cggagaaagc agtggcgtaa 1560 aagtccacca agctgctgtt cctattacac ggaaggaaca ctcggcccaa gatgccaagc 1620 aggccacata catgcccccg atgatgaggg gaggccaggc tgttggtgcg aaatccccgg 1680 ccatgactgc ttcttcagac gctatcagcg agatcaaaga agccattctg cggaagatcg 1740 atgttcgttc gatcgagaag caggtcgtgg agaccctggc cgagaaggcc atgaagaaac 1800 cccggagagc agggcgaaga agatctgcga acaggcagaa aacttctgcc aatacttcag 1860 ctccctctac cggtgggaat cagggtccgg aaaagaagcc cccggttttg aacaaaccgg 1920 aagcctcccc cagttttacc accctaaaca aaagggcgaa tcgcgttggg gagcagaagt 1980 cctccagcta cacccagagc tggaggccca cacgaggggc ttcgggtggc cccagttcgg 2040 ggcccaagcg gaattgaaat ccttgcggct acaagccgcc aggtggctgg aacgcgccca 2100 gcaagttaaa atcccctcgt ctgaggagag ggagcgcgtg ataaggaaat gctgcgaggc 2160 ctacaaaaac gttaaatcca acgggcctaa cgcaacgcga ggaaacaagc tctcctgggg 2220 taacttccta gaggacttta agcaagctgt tttctcgctc gagtttgacg ctggcatagg 2280 agtaccgtac gtcgcgtacg ggaagccaac gcaccgaggg tgggttgaga accatgagtt 2340 gctccccatt ttagctcgcc tgaccttcat ccgcctacag aagatgttgg aggttaggtt 2400 tgaagatctc accccggaac agctcgtgca acaagggctc tgcgatccaa ttcgcgtatt 2460 cgtcaaagga gagccgcaca agcaatccaa actcgatgag gggcgctacc gcctcataat 2520 gagcgtttcc ttggtggacc aactggtagc tcgggtcttg ttccagaacc agaacaagcg 2580 ggaaatcacc ctttggaggg ccgtcccgtc caaacccggt tttggcttgt ccacggacga 2640 gcaagtcgcg gagttcgttc aactactctc cgcgcaggtg caagtaagtc ctccccaact 2700 gattaacaat tggaggcaac acctggttgc aactgactgc tccggtttcg attggagcgt 2760 ttcggactgg cttctagaag atgatatgga agtccgaaac cgccttacca cagacctgaa 2820 cgagacaacg agcaagcttc gcgctgcttg gttgaaatgt atctccaaca gtgtcttgtg 2880 cctctctgat ggcaccctgc ttgcgcagcg tgtgcctggg gtacagaagt caggaagcta 2940 caacacctcc tcatccaatt ctcggattcg agtgatggca gctttccact gtggagccga 3000 gtgggcgatg gcgatgggcg atgatgctct tgagtcagtt agcaccgacc tagggaaata 3060 cgccgccctg ggtttcaaag tcgaggagtc ttcaaaactg gaattctgtt ctcatatttt 3120 tgagcgtgaa gacctcgcca ttccggtaaa caaagccaag atgatataca agttgataca 3180 tggctatgag ccggaatgtg gaaacgctga ggtacttgtt aattacctga ctgcatgctt 3240 cgcaatctta aatgaattgc ggtcagaccc tcagatggtc caaactctct acacgtggct 3300 ggttgaacca gtacagccac aaaacaatta agggagtata aagaacacta gccgagcaca 3360 cgaaagctgc aagcatcgga agtcaagcct ttcacatcag ccggacacta caagatagat 3420 ttcaaatttc tagcaggatt cgcaacaggc ttcttagccg caatcccaat ttcagtagcc 3480 ggcatttact tagtctacct taaaatctca tcccacgtgc gaagcatcgt taatgaatac 3540 ggtcgtgggt aggagaacaa tcaatggacg aagacgacca cgcaggcaag cacgacgcac 3600 tcagcgcaac cagccagtgg ttgtggtcca agcccctcgg tcaacacgac gcagaaatcg 3660 acgacgacga ggaggctcta accggagtcg aggagttatc cctgccagag gagcaggttc 3720 aggcgagaca tttgttttct cgcaagacaa cctcgcggga agttccagcg gatcaatcac 3780 gttcgggccg agtctatcag tctgcccagc attctctgat ggaatactca aggcctacca 3840 tgaatataat atcacgttgg tcattttgga gttcgtctcc gaggcctctt cccaaagctc 3900 cggttccttc gcttacgagc tggacccaca ctgtaaactc aattcactct cctctacaat 3960 taacaaattc gggatcacaa agcccgggag gagggcgttt acagcgtcgt tcatcaacgg 4020 ggttgattgg cacgatgtcg ccaaggatca attcaggatc ctctacaaag gcaatggttc 4080 ttcatcgata gctggttctt tcagaatcac cataaaatgc caatttcaca accccaaata 4140 ggtagacgcg gaaccaagcc ctagcccagg gctttctccc tctccgcaac ccacacccca 4200 gaagaagtat cgtttcatcg tttacactgg agtcccagtg actcgtataa tggctcaatc 4260 cacggatgac gccatctcct tgtatgacat gccgtctcag cggtttcgct acatagagga 4320 tgaaaacatg aactggacga acctcgattc tcgatggtat tcccagactt ctttaaaagc 4380 cgtcccaatg ataatagtac cagtccctca aggcgaatgg actgtggaaa tatcgatgga 4440 ggggtatcaa ccaaccccaa gcactacaga tcctaataag gacaaacaag atggtctcat 4500 tgcatataat gatgacttca aggaaggttg gaatgtgggt gtttacaata atgtggagat 4560 aaccaacaac aaggccgaca acactttgaa gtacggtcac ccggacatgg agcttaacag 4620 ctgtcacttc aatcaaggac aatgtctgga aagagatgga gatttgacct gtcacctcaa 4680 aacgactggt gacaatgcct ccttctttat tgttggaccc gccgtccaga agcaatccaa 4740 gtataactac gccgcttcat acggagcctg gacggatcgg atgatggaga tagggatgat 4800 tgctatagca cttgatgaac aaggctcatc cggttccaca aagatcaaaa gaccaaagag 4860 agctgggcac tccatggcag tctccacttg ggagactata agctttccga agaatgagaa 4920 ctttgaggaa agcagcacta gtcaaagaca agactttaac actcctctca cacacggtga 4980 gagtcccgac aatctggaag tcggtgtagg aggcttgccc cttcctgttg aaaacatccc 5040 tgactttgat ggggacgatc tctggtccaa tatatcgacc aggaaaccac aggaagacga 5100 ggctatgacg tcaaagagtg gctttaagcc ccaattgaag cctcctggtc tgccacgacc 5160 acaaccggtt agaactatcc ggaatttcaa tccggagccg gatttggtcg aagcgtggcg 5220 acccgatgtg aaccccggat attccaagga agacgtggca gcggccactg ttatgtacgg 5280 gggttccgtc catgaaggcc ggtctatgct cgctaaacgc gatcaagctg tattagacgg 5340 ccgcaagagt tggggttcat ctctagcttc caccctcacg gggggaacgc tcagagcctc 5400 cgcccagtcg gagaagcttg ctcaactcac ttcgagtgaa cgagcaatgt ttgaacgcac 5460 caaacgccag caaggtcgca cagcggcctc ggagttattg ggagaacttt tagctggcaa 5520 gaaccctaat tcttccaggt cctgatgaac caatctaaat catcactgtc gagcccgtga 5580 cattaaacgt ggaacgattc cgaaaggata ggcaacgagt gttacccatt gttgggtcac 5640 agaaggactc cttctggcac ttcggtgt 5668 //