Dbfetch
ID EU628645; SV 1; circular; genomic DNA; STD; VRL; 2686 BP. XX AC EU628645; XX DT 30-SEP-2008 (Rel. 97, Created) DT 30-SEP-2008 (Rel. 97, Last updated, Version 1) XX DE Maize streak virus isolate MSV-B1_Za-Ans-g140-2006, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2686 RX DOI; 10.1099/vir.0.2008/003590-0. RX PUBMED; 18753214. RA Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B., RA Rybicki E.P., Peterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S., RA Windram O.P., Lefeuvre P., Lett J.M., Martin D.P.; RT "Recombination, decreased host specificity and increased mobility may have RT driven the emergence of maize streak virus as an agricultural pathogen"; RL J. Gen. Virol. 89(Pt 9):2063-2074(2008). XX RN [2] RP 1-2686 RA Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B., RA Rybicki E.P., Piterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S., RA Windram O.P., Lefeurve P., Lett J.-M.; RT ; RL Submitted (10-APR-2008) to the INSDC. RL Electron Microscope Unit, University of Cape Town, RW James Bld, RL Rondebosch, Cape Town, WP 7701, South Africa XX DR MD5; cd56aa3abe5190294caf1d0dc38be34c. XX FH Key Location/Qualifiers FH FT source 1..2686 FT /organism="Maize streak virus" FT /isolate="MSV-B1_Za-Ans-g140-2006" FT /mol_type="genomic DNA" FT /country="South Africa" FT /lat_lon="29.92 S 31.02 E" FT /collection_date="2006" FT /db_xref="taxon:10821" FT CDS 157..462 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:B6CZV6" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:B6CZV6" FT /protein_id="ACF40574.1" FT /translation="MDPQNSFLLQPRVPTAAPTSGGVPWSRVGEVAILSFVGLICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGIEAVDRRNPIPNTQAPPSQGNPGPFVPGTG" FT CDS 473..1207 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:B2BX46" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:B2BX46" FT /protein_id="ACF40575.1" FT /translation="MSTSKRKRGDDANWNKRTTKKKPSSAGLKKAGSKADRPSLQIQTL FT QHAGSTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAQACKYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1715..2533) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:B6CZV8" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B6CZV8" FT /protein_id="ACF40576.1" FT /translation="MASSSSNRQFTHRNVNTFLTYPHCPENPEIVCQMIWELVGRWTPK FT YIICAREAHRDGDMHLHALIQTEKPVRITDSRFFDIKGFHPNIQSAKSVNKVRDYILKE FT PLALFERGTFIPRKSSFLGNPSKGNSEKKPSKDEIMREIISHSTSKLEYLSMIRKEFPY FT DWATKLQYFEYSANKLFPEIQEEFISPHPPSSPDLLCNESIKDWLQPNIFQVSPESYML FT LQPTCYTLEDAISDLEWMDKLSSQQMKEQESRASTSSVQQEQENLLGPEA" XX SQ Sequence 2686 BP; 700 A; 613 C; 677 G; 696 T; 0 other; taatattacc gcgccttctt tttctgcgag ggcccgaagg gaccgagcga tttgatttaa 60 agttcggttc tgctttgtct gatttatcta aagcagccca atctaaagaa accggtcccc 120 tgcgactata aattgtttca caagtgcgat tcatttatgg atccacagaa ctcctttctt 180 ctacagccgc gggtacccac agcagctccg acatccggag gagtgccgtg gagtcgcgtc 240 ggcgaggtag ctattttgag ctttgttgga ttgatttgct tttacttgct ttacctttgg 300 gtgctgagag atcttatctt agttctgaag gctcgacaag gcagatccac ggaggagctg 360 atatttggaa tagaagctgt ggataggagg aaccctatcc ctaatacaca agcaccacca 420 agtcagggga atcccgggcc gtttgttcca ggcacgggat aagcaatcag ccatgtccac 480 gtccaagagg aagcggggag atgatgcgaa ctggaataag cggacgacta agaagaagcc 540 ttcttcagct ggtctgaaga aggctggaag caaggccgac aggccatccc ttcagatcca 600 gacactccag catgctgggt ccaccatgat aacagtcccc tccggaggag tatgtgacct 660 catcaacacc tatgcccgag gatccgacga gggcaaccgc cacaccagcg agactctgac 720 gtacaagatt gccgtcgact accacttcgt tgcagacgcg caagcctgca agtattctaa 780 caccgggacc ggtgtgatgt ggctggtgta cgacaccact cccggcggac aagcgccgac 840 cccacaaacc atatttgcat atccggacac gctgaaagct tggccggcca catggaaagt 900 gagccgggag ctgtgtcatc gcttcgtggt gaaacggcga tggttgttca acatggagac 960 cgacgggcga attggttcgg acatccctcc ttcgaatgca agttggaagc cgtgcaagcg 1020 caacatctac ttccacaagt tcacgagtgg gttgggagtg agaacgcagt ggaagaatgt 1080 aacggacgga ggagttggtg cgatacagag aggagctctg tacatggtca ttgcccctgg 1140 caatggcctt acatttactg cccatgggca gacccgtctg tactttaaga gtgttggcaa 1200 ccagtaatga ataaaaactc cgttttatta tatatgatga atgctgaaag cttacattaa 1260 tatgtcgtgc gatggcacga aaaacacacg caaacaatac aggggggtag taggcgggcg 1320 gctaagggtg gtgctcggcg ggcaaaacat cgaaaaatca agatctatat gaattacact 1380 tcctccgtag gaggaagcac agggggagaa taccacttct cccccggcga cattttataa 1440 atcatgcaat ttgcctcgaa atactccagc tgccctggag tcatttcctt catccagtct 1500 tcatcccagt tggcgaggat gattgtaggc ttagacttca tctgaacttt cttcttcttg 1560 ccatattttg gatttacaac gaactctttc tgacagccaa ctaactgttt ccaacaaggg 1620 cagaatttaa aaggaatatc atctacgatg ttgtagattg cgtcttcgtt gtaagaagac 1680 caatcaacat tattttgcca ataattatga agccctaagc ttctggccca agtagatttt 1740 cctgttcttg ttggaccgac gatgtagagg ctctgctttc ttgttccttc atctgttggc 1800 tggataattt atccatccat tcaaggtcag agatagcatc ttcgagggtg taacaggtag 1860 gttgaagaag catgtatgat tcgggactaa cctggaagat gttaggctgg agccaatctt 1920 tgattgactc attacaaaga agatcaggtg aagagggtgg atgaggactg atgaactctt 1980 cctgaatctc agggaacaat ttatttgcag agtattcaaa atactgcaat tttgtggccc 2040 agtcataggg gaactcttta cgaatcatag agaggtactc tagctttgaa gtggaatgtg 2100 aaataatctc tctcattatt tcatctttgg aaggtttctt ttcagaattt cccttggaag 2160 gatttcctag gaagcttgac ttcctaggaa tgaaagtacc tctctcaaac aaggcaagag 2220 gttccttgag aatgtaatcc ctgaccttgt ttacagattt tgcactctga atgtttgggt 2280 ggaacccttt gatatcaaag aaccttgagt cagtgattct taccggtttc tctgtctgga 2340 ttaatgcatg taaatgcata tctccatctc tgtgtgcctc tcgggcacat atgatatact 2400 taggggtcca acgaccaacg agctcccaaa tcatctgaca gacgatttct ggattttctg 2460 gacagtgtgg atatgttaag aacgtgttaa cgttcctgtg tgtgaactga cggttggatg 2520 aggaggaggc catatcggac gactccgagc agattgcggg atggcaggat gggagctcca 2580 aactctatat caaccggctg cgccttcgaa atccgccgct ccccctttta tagtggttgt 2640 ttatgggccg gaccgggccg gcccagcagg aaaagaaggc gcgcaa 2686 //