Dbfetch
ID EU628638; SV 1; circular; genomic DNA; STD; VRL; 2687 BP. XX AC EU628638; XX DT 30-SEP-2008 (Rel. 97, Created) DT 30-SEP-2008 (Rel. 97, Last updated, Version 1) XX DE Maize streak virus isolate MSV-H_Ng-Lag-g74-2007, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2687 RX DOI; 10.1099/vir.0.2008/003590-0. RX PUBMED; 18753214. RA Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B., RA Rybicki E.P., Peterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S., RA Windram O.P., Lefeuvre P., Lett J.M., Martin D.P.; RT "Recombination, decreased host specificity and increased mobility may have RT driven the emergence of maize streak virus as an agricultural pathogen"; RL J. Gen. Virol. 89(Pt 9):2063-2074(2008). XX RN [2] RP 1-2687 RA Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B., RA Rybicki E.P., Piterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S., RA Windram O.P., Lefeurve P., Lett J.-M.; RT ; RL Submitted (10-APR-2008) to the INSDC. RL Electron Microscope Unit, University of Cape Town, RW James Bld, RL Rondebosch, Cape Town, WP 7701, South Africa XX DR MD5; 1adb42fbc8789867d8bc088e93899e8f. DR EuropePMC; PMC2777162; 19903330. XX FH Key Location/Qualifiers FH FT source 1..2687 FT /organism="Maize streak virus" FT /host="Setaria barbata" FT /isolate="MSV-H_Ng-Lag-g74-2007" FT /mol_type="genomic DNA" FT /country="Nigeria" FT /lat_lon="8.9 N 4.67 E" FT /collection_date="2007" FT /db_xref="taxon:10821" FT CDS 158..463 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:B6CZT5" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:B6CZT5" FT /protein_id="ACF40554.1" FT /translation="MDPQVESFRVPRVPSAAPPSGGVQWSHVGEVAILSFVGLICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGSEAVDRSNPIPNLQPPAIQVNPGPFVPGSG" FT CDS 474..1208 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:B6CZT6" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:B6CZT6" FT /protein_id="ACF40553.1" FT /translation="MSTSKRKRADDASWNKKPTKKKPSSAGLKKAGAKADRPSLQIQTL FT QHCGSTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACKYSNT FT GTGVMWLVYDTTPGGQAPTTQQIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTMWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1716..2534) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:B6CZT7" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B6CZT7" FT /protein_id="ACF40555.1" FT /translation="MASSSSNRQFSHRNANTFLTYPHCPENPEIVCQIIWELVGRWNPK FT YIICAREAHKDGDMHLHALIQTEKPVRITDSRFFDINGFHPNIQSAKSVNKVRDYILKE FT PLALFERGTFIPRKSPFLGKSDSEGNSKKPTKDEIMREIISHSTSKQEYLSMIQKEFPF FT DWATKLQYFEYSANKLFPEIQEEFISPHPPSSPDLLCNESIKDWLQPNIFQVSPESYML FT LQPTCYTLEDAISDLQWMDNLSSQQMKDQESRASTSSDQQEQENLLGPEA" XX SQ Sequence 2687 BP; 661 A; 605 C; 699 G; 722 T; 0 other; taatattacc gcgccttctt ttctgcgagg gcccggtagg gaccgagcgt ttttgatttt 60 aagcgtggat ctgctttgtt tgattttgct aaagcagcca tctttgagaa atccggtccc 120 ctgcgactat aaattgtctc acaagtgcga ttcatccatg gatccccagg ttgagtcctt 180 tagagtgccg cgggtaccct cagcagctcc gccatccgga ggagtgcagt ggagtcacgt 240 cggcgaggta gctatactga gctttgttgg tttgatttgc ttttacttgc tttacctttg 300 ggtgctgaga gatcttatct tagttctgaa ggctcgacaa gggaggtcca cagaggagct 360 gatatttgga tctgaagctg tggataggag caaccctatc cctaatcttc agcctccagc 420 cattcaagtg aatcccggac cgtttgttcc aggttcggga taagcattca gccatgtcca 480 cgtccaagag gaagcgtgca gatgatgcga gctggaataa gaagcccact aagaagaagc 540 cttcttcagc tggtctgaag aaggctggag ctaaggctga caggccttcc ctccagatcc 600 agaccctaca gcattgtggg tccactatga tcactgtgcc atctgggggt gtctgtgacc 660 tcatcaatac ctatgcccga ggatccgatg agggcaaccg ccacaccagc gagactctga 720 cgtacaagat cgccatcgac taccacttcg ttgctgacgc cgcagcctgc aagtattcca 780 acaccgggac cggtgtgatg tggctggtgt atgacactac tcccggcgga caagcgccga 840 ccacgcaaca gatatttgcc tacccggaca cgctgaaagc ttggccggca acatggaaag 900 tgagccggga gctgtgtcac cgcttcgtgg tgaaacgacg gtggttgttc aacatggaga 960 ccgacgggcg cattggttcg gacatccctc cttcgaatgc aagttggaag ccgtgcaagc 1020 ggaacattta cttccacaag ttcacgagtg ggttgggagt gagaacgatg tggaagaatg 1080 taacagacgg tggagttggt gcgatacaga ggggagcgtt gtacatggtc attgccccag 1140 gcaatggcct tacatttact gcccatgggc agacccgtct gtactttaag agtgtcggca 1200 accagtgatg aataaaaact cccgttttat tatatttgat gaatgctgaa agcttacatt 1260 gatatgtcgt gcgatggcac gaaaaacaca ctagcaatac aggggggtcg gggcaaagca 1320 ggcggctatt gggcgcgccc ggggcaacac actaaaaaaa acacagatta tgaattacac 1380 ttcctccgta ggaggaagca ctgggggaga gtaccacttc tcccccggcg acataatata 1440 aatcatgcag tttgcttcga aatactccag ctgtcctgga gtcatttcct tcatccagtc 1500 ttcatccgag ttggcgagga taatagtagg cttagacttc atctgcacct tcttcttctt 1560 cccatattta ggatttacaa cgaattcttt ttgacagcca actaactgtt tccaacaagg 1620 acagtattta aaggggatat catctatgat gttgtagatt gcgtcttcgt tgtatgaaga 1680 ccaatcaaca ttattttgcc agtaattatg aacccctagg cttctggccc aagtagattt 1740 tcctgttctt gttggtccga cgatgtagag gctctgcttt cttgatcttt catctgttgg 1800 ctggataagt tatccatcca ttgaaggtca gagatagcat cctcgagggt ataacaggta 1860 ggttgaagaa gcatgtatga ttcgggacta acctgaaaga tgttaggctg gagccaatct 1920 ttgattgact cattgcatag aagatcaggt gatgagggtg gatgaggact gatgaactct 1980 tcctgaattt cagggaagag cttatttgca gagtattcaa agtactgcaa ttttgtggcc 2040 caatcaaagg ggaattcttt ttggatcatg gagaggtact cttgcttaga agtggagtgt 2100 gaaataatct ctcgcattat ttcatctttg gtaggtttct ttgaattccc ctctgaatca 2160 gattttccta ggaagggtga cttcctagga atgaaagtac ctctctcaaa caaggccaga 2220 ggttccttga gtatgtaatc tctgactttg tttacagatt tggcactctg aatgttaggg 2280 tggaacccat ttatgtcaaa gaaccttgag tcagtgattc ttaccggttt ctctgtctgg 2340 attaatgcat gtagatgcat atctccatct ttgtgtgcct ctcgggcaca tatgatgtac 2400 ttagggttcc aacgaccgac gagctcccag atgatctgac agacgatttc tggattttct 2460 ggacagtgtg gatatgttaa gaacgtgtta gcgttcctat gagagaactg acggttggat 2520 gaggaggagg ccatatcgga cgactctgag cagcttgcgg gatggcagga tgggagctcc 2580 caaaactcta tgtaaccggt gcgccttcga aatccgccgc tcccctcttt atagtggttg 2640 tatttgggcc ggaccgggcc ggcccagcag aaaaagaagg cgcgcaa 2687 //