Dbfetch
ID EU628621; SV 1; circular; genomic DNA; STD; VRL; 2684 BP. XX AC EU628621; XX DT 30-SEP-2008 (Rel. 97, Created) DT 30-SEP-2008 (Rel. 97, Last updated, Version 1) XX DE Maize streak virus isolate MSV-B3_Re-BasG-R12-2006, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2684 RX DOI; 10.1099/vir.0.2008/003590-0. RX PUBMED; 18753214. RA Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B., RA Rybicki E.P., Peterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S., RA Windram O.P., Lefeuvre P., Lett J.M., Martin D.P.; RT "Recombination, decreased host specificity and increased mobility may have RT driven the emergence of maize streak virus as an agricultural pathogen"; RL J. Gen. Virol. 89(Pt 9):2063-2074(2008). XX RN [2] RP 1-2684 RA Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B., RA Rybicki E.P., Piterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S., RA Windram O.P., Lefeurve P., Lett J.-M.; RT ; RL Submitted (10-APR-2008) to the INSDC. RL Electron Microscope Unit, University of Cape Town, RW James Bld, RL Rondebosch, Cape Town, WP 7701, South Africa XX DR MD5; cd7edceecb66166a95c8e2b6436fb1d9. XX FH Key Location/Qualifiers FH FT source 1..2684 FT /organism="Maize streak virus" FT /host="Digitaria ciliaris" FT /isolate="MSV-B3_Re-BasG-R12-2006" FT /mol_type="genomic DNA" FT /country="Reunion" FT /lat_lon="21.31 S 55.5 E" FT /collection_date="2006" FT /db_xref="taxon:10821" FT CDS 158..463 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:B6CZL6" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:B6CZL6" FT /protein_id="ACF40502.1" FT /translation="MDPQNSYLLQPRVPTAAPTSGGVPWSRVGEVAILSFVGLICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGIQAVDRSNPIPNIPAPPSQGNPGPFVPGTG" FT CDS 474..1208 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:B6CZL4" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:B6CZL4" FT /protein_id="ACF40503.1" FT /translation="MSTSKRKRGDDANWNKRATKKKPSSAGLKKAGSKADRPSLQIQTL FT QHAGSTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAQACKYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1714..2532) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:B6CZN6" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B6CZN6" FT /protein_id="ACF40504.1" FT /translation="MASSSSNRQFSHRNVNTFLTYPHCPENPEIVCQMIWELVGRWTPK FT YIICAREAHRDESFHLHALVQTDKPVRITDSRFFDINGFHPNIQSAKSVNKVRDYILKE FT PLALFERGTFIPRKSSFLGNSSKGNSEKKPSKDEIMREIISHSTSKQEYLSLVRKEFPY FT DWATKLQYFEYSANKLFPEIQEEFISPHPPSSPDLLCNESIKDWLQPNIYQVSPESYML FT LQPTCYTVEDAISDLEWMDKLSSQQMKDQESRASTSSVQQGQENLLGPEA" XX SQ Sequence 2684 BP; 681 A; 624 C; 674 G; 705 T; 0 other; taatattacc gcgccttctt ttcctgcgag ggcccggtag ggcccgagcg atttgattta 60 aagtttggtt ctgctttgtc tgatttattg aaagcagtcc tgtttaaaga aaccggtccc 120 ctgcgactat aaattgtctc acaagtgcga ttcatttatg gatccacaga actcctatct 180 tctacagccg cgggtaccca cagcagctcc gacatccgga ggagtgccgt ggagtcgcgt 240 aggcgaggta gctattttga gctttgttgg attgatttgc ttttacctgc tttacctttg 300 ggtgctgaga gatcttatct tagttctgaa ggctcgacaa ggcagatcca cggaggagct 360 gatatttgga atacaagctg tggataggag caaccctatc cctaatatac cagcaccacc 420 aagtcagggg aatcccgggc cgtttgttcc aggcacggga taagcaatca gccatgtcca 480 cgtccaagag gaagcgtgga gatgatgcga actggaataa gcgggcgact aagaagaagc 540 cttcttcagc tggtctgaag aaggctggaa gcaaggccga taggccatcc cttcagatcc 600 agacactcca gcatgctggg tccaccatga taacagtccc ctccggagga gtatgtgacc 660 tcatcaacac ctatgcccga ggatctgacg agggcaaccg ccacaccagc gagactctaa 720 cgtacaagat tgccgtcgac taccacttcg ttgctgacgc gcaagcctgc aagtactcca 780 acaccggaac cggtgtgatg tggctggtgt atgacaccac tcccggcgga caagcgccga 840 ccccgcaaac tatatttgcc tacccggaca cgctgaaagc ttggccggcc acatggaaag 900 tgagccggga gctgtgtcat cgcttcgtgg tgaaacggcg atggttgttc aacatggaga 960 ccgacggtcg gattggttcg gatatccctc catcgaatgc aagttggaag ccttgcaagc 1020 gcaacatcta cttccacaag ttcacgagtg ggttgggagt gagaacgcag tggaagaatg 1080 taacggacgg aggagttggt gccatccaga gaggagctct gtacatggtc attgcccctg 1140 gcaatggcct tacatttact gcccatgggc agacccgtct gtactttaag agtgttggca 1200 accagtaatg aataaaaact cccgttttat tatatctgat gaatgctgaa agcttacatt 1260 aatatgtcag ccgattggct gaacgaaaaa tacatagcgc agccgcgggc taaagaccgc 1320 gtctcaagcg accctgaaca tacaataatc gaaaaaacaa gatgtataag aattaaactt 1380 cctccgtagg aggaagcaca gggggagaaa accacttctc ccccggcgac ataatgtaaa 1440 tcatgcagtt tgcctcgaaa tactccagct gccctggagt catttccttc atccagtctt 1500 catccgagtt ggcgaggatt attgtaggct tggacttcat ctgcactttc ttcttctttc 1560 catattttgg atttacgacg aattcctttt ggcagccaac taactgtttc caacaaggac 1620 aatatttaaa tgggatatca tctacgatgt tgtagattgc gtcttcgttg taagaagacc 1680 aatcaacatt attctgccaa taattatgaa cccctaggct tctggcccaa gtagattttc 1740 ctgtccttgt tggaccgacg atgtagaggc tctgctttct tgatccttca tctgttggct 1800 ggataattta tccatccatt caaggtcaga gatagcatct tcgacggtat aacaggttgg 1860 ttgaagaagc atgtatgatt ctggactaac ctgatagatg ttaggctgga gccaatcttt 1920 gattgactca ttacaaagaa gatcaggtga agagggtgga tgagggctga tgaactcttc 1980 ctgaatctca ggaaacagtt tatttgcaga gtattcaaaa tactgcaatt ttgtggccca 2040 gtcatagggg aactctttac gaaccaatga gaggtactct tgctttgaag tggagtgtga 2100 aataatctct cgcattattt catcttttga aggtttcttt tctgaatttc ccttggaaga 2160 atttcctagg aagcttgact tcctgggaat gaaggtacct ctctcaaaca aggccagagg 2220 ttccttgaga atgtaatccc tgaccttgtt tacggatttt gcactctgaa tgtttgggtg 2280 gaacccgttg atatcaaaga accttgagtc agtgattctt accggtttgt ccgtctggac 2340 taatgcatgt agatggaaac tctcatctct atgtgcctct cgggcacata tgatgtactt 2400 gggggtccaa cgaccgacga gctcccaaat catctgacag acgatttctg gattttctgg 2460 acagtgtgga tatgttaaga acgtgttaac gttcctgtgt gagaactgac ggttggatga 2520 ggaggaggcc atatcggacg actccgagca gcttgcggga tggcaggttg ggagctccaa 2580 actctatgta accggtttgc gccttcgaaa tccgccgctc ccccttttat agaggttgtt 2640 cttgggccgg actgggccgg cccgcgggaa aagaaggcgc gcat 2684 //