ID EU628612; SV 1; circular; genomic DNA; STD; VRL; 2684 BP. XX AC EU628612; XX DT 30-SEP-2008 (Rel. 97, Created) DT 30-SEP-2008 (Rel. 97, Last updated, Version 1) XX DE Maize streak virus isolate MSV-B2_Ug-BusC-2005, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2684 RX DOI; 10.1099/vir.0.2008/003590-0. RX PUBMED; 18753214. RA Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B., RA Rybicki E.P., Peterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S., RA Windram O.P., Lefeuvre P., Lett J.M., Martin D.P.; RT "Recombination, decreased host specificity and increased mobility may have RT driven the emergence of maize streak virus as an agricultural pathogen"; RL J. Gen. Virol. 89(Pt 9):2063-2074(2008). XX RN [2] RP 1-2684 RA Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B., RA Rybicki E.P., Piterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S., RA Windram O.P., Lefeurve P., Lett J.-M.; RT ; RL Submitted (10-APR-2008) to the INSDC. RL Electron Microscope Unit, University of Cape Town, RW James Bld, RL Rondebosch, Cape Town, WP 7701, South Africa XX DR MD5; 5ffa03921f8a27497701b2dbdba2e2bd. XX FH Key Location/Qualifiers FH FT source 1..2684 FT /organism="Maize streak virus" FT /host="Digitaria ciliaris" FT /isolate="MSV-B2_Ug-BusC-2005" FT /mol_type="genomic DNA" FT /country="Uganda" FT /lat_lon="0.5 N 30.1 E" FT /collection_date="2005" FT /db_xref="taxon:10821" FT CDS 157..462 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:B6CZK1" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:B6CZK1" FT /protein_id="ACF40475.1" FT /translation="MDPQNTFFVQPRVPTAAPTSGGVPWSRVGEVAILSFVGLICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGIQAVDRSNPIPNTQAPPSQGNPGPFVPGTG" FT CDS 473..1207 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:B6CZK5" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:B6CZK5" FT /protein_id="ACF40476.1" FT /translation="MSTSKRKRGDDANWNKRSTKKKPASAGLKKAGAKADRPSLQIQTL FT QHAGSTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAQACKYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1713..2531) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:B6CZK9" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B6CZK9" FT /protein_id="ACF40477.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIVCQMIWELVGRWNPK FT YIICAREAHKDGDLHLHALIQTEKPVRITDSRFFDINGFHPNIQSAKSVNKVRDYIIKE FT PLALFERGTFIPRKSPFLGKSDSEGSSKKPTKDEIMADIISHSTSKQEYLSMIQKAFPF FT DWATKLQYFEYSANKLFPEIQEEFISPHPPSSPDLLCNESIKDWLQPNIYQVSPESYML FT LQPTCYTVEDAISDLEWMDKLSSQQMKDQESRASTSSVQQELENLLGPEA" XX SQ Sequence 2684 BP; 698 A; 622 C; 671 G; 693 T; 0 other; taatattacc gcgccttctt tttctgcgag ggcccgaagg gaccgagcga tttgatttaa 60 agttcggttc tgctttgtct gatttatcta aagcagtcca atctaaagaa accggtcccc 120 tgcgactata aattgcctca caagtgcgat tcattcatgg atccacagaa taccttcttt 180 gttcagccgc gggtacccac agcagctccg acatccggag gagtgccgtg gagtcgcgtc 240 ggcgaggtag ctattttgag ctttgttgga ttgatttgct tttacctgct ttacctttgg 300 gtgctgagag atcttatctt agttttgaag gcaagacaag gcagatccac ggaggagctg 360 atatttggaa tacaagctgt ggataggagt aaccctatcc ctaatacaca agcaccacca 420 agtcagggga atcccggacc gtttgtcccc gggacgggat aagcaatcag ccatgtctac 480 gtccaagagg aagcgaggag atgatgcgaa ctggaataag cggtcgacta agaagaagcc 540 tgcttcagct ggtctgaaga aggctggagc gaaggccgat aggccatccc tccagatcca 600 gacactccag catgctgggt ccaccatgat aacagtcccc tccggaggag tatgtgacct 660 catcaacacc tatgcccgag gatccgacga gggcaaccgc cacaccagcg agactctgac 720 gtacaagatt gccgtcgact accacttcgt cgcagacgcg caagcctgca agtactccaa 780 caccggaacc ggtgtgatgt ggctggtgta tgacaccact cccggcggac aagcgccgac 840 cccgcaaact atatttgcct acccggacac gctgaaagct tggccggcaa catggaaagt 900 gagccgggag ctgtgtcatc gcttcgtggt gaaacggcga tggttgttca acatggagac 960 cgacggtcga attggttcgg acatccctcc ttcgaatgca agttggaagc cgtgcaagcg 1020 caacatctac ttccacaagt tcacgagtgg gttgggagtg agaacgcagt ggaagaatgt 1080 aacggacgga ggagttggtg cgatacagag aggagctctg tacatggtca ttgcccctgg 1140 caatggcctt acatttactg cccatgggca gacccgtctg tactttaaga gtgtcggcaa 1200 ccagtgatga ataaaaactc ccgttttatt atatctgatg aatgctcaaa gcttacatta 1260 atatgtcgtg cgatggcacg aaaacacgct atcaatacag gggggaggta gccggcggct 1320 aagggaacga agttcgtggg caaaacatca aaaaaacaag agcaatcgaa attaaactgc 1380 ctccgtagga ggcagcacag ggggagaata ccacttctcc cccggcgaca taatataaat 1440 catgcagttt gcctcgaaat actccagctg ccctggagtc atttccttca tccagtcttc 1500 atccgagttg gcgaggataa ttgtaggctt agacttcatc tgcactttct tcttctttcc 1560 atatttcgga tttacaacga actctttctg acagccaact aactgtttcc aacaaggaca 1620 gtatttaaat ggaatatcat ctacgatgtt gtagattgcg tcttcgttgt aggaagacca 1680 atcaacatta ttttgccagt aattatgaag ccctaagctt ctggcccaag tagattttcc 1740 agttcttgtt ggaccgacga tgtagaggct ctgctttctt gatctttcat ctgttggctg 1800 gataatttat ccatccattc aaggtcagag atagcatcct cgacggtata acaggtaggt 1860 tgaagaagca tgtatgattc tggactaacc tgatagatgt ttggctggag ccaatctttg 1920 attgactcat tacaaagaag atcaggtgaa gatggtggat gaggactgat gaactcttcc 1980 tgaatctcag gaaacaattt atttgcagag tattcaaaat actgcaattt tgtggcccaa 2040 tcaaagggga atgctttctg aatcatagag aggtactctt gcttggaagt ggagtgagaa 2100 ataatgtctg ccattatttc atctttggta ggtttcttgg aacttccctc tgaatcagat 2160 tttcctagga acggtgattt cctaggaatg aaagtacctc tctcaaacaa agccagaggt 2220 tccttgatta tgtaatcccg gactttgttt acagattttg cactctgaat gtttgggtgg 2280 aacccgttga tatcaaagaa ccttgagtca gtgattctta ccggtttctc tgtttggatt 2340 aatgcatgta aatgcaaatc tccatctttg tgtgcctctc gggcacatat gatgtactta 2400 gggttccaac gaccaacgag ctcccaaatc atctgacaga cgatttctgg attttctgga 2460 cactttggat atgttaggaa cgtgttagcg ttcctgtgtg agaactgacg gttggatgag 2520 gaggaggcca tatcggacga ctccgagcag cttgccggat ggcaggatgg gagctccaaa 2580 ctctatatct acccgctgcg ccttcgaaat ccgccgctcc cctctttata gtggttgttt 2640 atgggccgga ccgggccggc ccagcaggaa aagaaggcgc gcaa 2684 //