Dbfetch
ID EU628600; SV 1; circular; genomic DNA; STD; VRL; 2683 BP. XX AC EU628600; XX DT 30-SEP-2008 (Rel. 97, Created) DT 30-SEP-2008 (Rel. 97, Last updated, Version 1) XX DE Maize streak virus isolate MSV-B1_Za-RawK-g30-2006, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2683 RX DOI; 10.1099/vir.0.2008/003590-0. RX PUBMED; 18753214. RA Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B., RA Rybicki E.P., Peterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S., RA Windram O.P., Lefeuvre P., Lett J.M., Martin D.P.; RT "Recombination, decreased host specificity and increased mobility may have RT driven the emergence of maize streak virus as an agricultural pathogen"; RL J. Gen. Virol. 89(Pt 9):2063-2074(2008). XX RN [2] RP 1-2683 RA Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B., RA Rybicki E.P., Piterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S., RA Windram O.P., Lefeurve P., Lett J.-M.; RT ; RL Submitted (10-APR-2008) to the INSDC. RL Electron Microscope Unit, University of Cape Town, RW James Bld, RL Rondebosch, Cape Town, WP 7701, South Africa XX DR MD5; e6b5043df4bbe5eb52b94f31761d20ad. XX FH Key Location/Qualifiers FH FT source 1..2683 FT /organism="Maize streak virus" FT /isolate="MSV-B1_Za-RawK-g30-2006" FT /mol_type="genomic DNA" FT /country="South Africa" FT /lat_lon="33.87 S 19.31 E" FT /collection_date="2006" FT /db_xref="taxon:10821" FT CDS 157..462 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:B6CZH1" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:B6CZH1" FT /protein_id="ACF40439.1" FT /translation="MDPQNSFLLQPRVPTAAPTSGGVSWSRVGEVAILSFVGLICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGIQAVDRSNPIPNTQTPPSQVNPGPFVPGTG" FT CDS 473..1207 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:B6CZB2" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:B6CZB2" FT /protein_id="ACF40440.1" FT /translation="MSTSKRKRGDDANWNKRTTKKKPSSAGLKKAGSKAERPSLQIQTL FT QHAGSTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADSQACKYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1711..2529) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:B6CZH3" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B6CZH3" FT /protein_id="ACF40441.1" FT /translation="MASSSSNRQFSHRNVNTFLTYPHCPENPEIVCQMIWELVGRWTPK FT YIICAQEAHKDGDMHLHALLQTEKPVRITDSRFFDIEGFHPNIQSAKSVNKVRDYILKE FT PLAVFERGTFIPRKSSFQGNPSKGNSEKKPSKDEIMREIISHSTSKLEYLSMIRKEFPY FT DWATKLQYFEYSANKLFPEIQEEFISPHPPSSPDLLCNESIKDWLQPNIFQVSPESYML FT LQPTCYTLEDAISDLEWMEKLSSQQMKEQESRASTSSVQQELGNLLGPEA" XX SQ Sequence 2683 BP; 700 A; 618 C; 664 G; 701 T; 0 other; taatattacc gcgccttctt tttctgcgag ggcccgtagg gaccgagcga tttgatttaa 60 agttcggttc tgctttgtct gatttatcta aagcagccca atctaaagaa accggtcccc 120 tgcgactata aattgtttca caagtgcgat tcatttatgg atccacagaa ctcctttctt 180 ctacagccgc gggtacccac agcagctccg acatccggag gagtgtcgtg gagtcgcgtc 240 ggcgaggtag ctattttgag ctttgttgga ttgatttgct tttacctgct ttacctttgg 300 gtgctgagag atcttatctt agttctgaag gctcgacaag gcagatccac ggaggagctg 360 atatttggaa tacaagctgt ggataggagc aaccctatcc ctaatacaca gacaccacca 420 agtcaggtga atcccgggcc gtttgttcca ggcacgggat aagcaatcag ccatgtccac 480 gtccaagagg aagcggggag atgatgcgaa ctggaataag cggacgacta agaagaagcc 540 atcttcagct ggtctgaaga aggctggaag caaggccgaa aggccatccc ttcagatcca 600 gacactccag catgctgggt ccaccatgat aacagtcccc tccggaggag tatgtgatct 660 catcaacacc tatgcccgag gatccgacga gggcaaccgc cacaccagcg agactctgac 720 gtacaagatt gccgtcgact accacttcgt tgcagactcg caagcctgca agtattctaa 780 caccgggacc ggtgtgatgt ggctggtgta cgacaccact cccggcggac aagcgccgac 840 cccacaaacg atatttgcat atccggacac gctgaaagct tggccggcaa catggaaagt 900 gagccgggag ctgtgtcatc gcttcgtggt gaaacggcga tggttgttca acatggagac 960 cgacggtcga attggttcgg acatccctcc ttcgaatgca agttggaagc cgtgcaagcg 1020 caacatctac ttccacaagt tcacgagtgg gttgggagtg agaacgcagt ggaagaatgt 1080 aacggacgga ggagttggtg cgatacagag aggagctctg tacatggtca ttgcccctgg 1140 caatggcctt acatttactg cccatgggca gacccgtctg tactttaaga gtgtcggcaa 1200 ccagtaatga ataaaaactc cgttttatta tatctgatga atgctgaaag cttacattaa 1260 tatgtcgtgt gatggcacga aaaacacact ggaacgcagc cccgggctaa agaccgggtc 1320 tcaagagacc ctgcgataca aaacatcgaa aaaacaagat ctatatgaat tacacttcct 1380 ccgtaggagg aagcacaggg ggagaatacc acttctcccc cggcgacatt ttataaatca 1440 tgcagtttgc ctcgaaatac tccagctgcc ctggagtcat ttcattcatc cagtcttcat 1500 cccagttggc gaggatgatt gtaggcttag acttcatctg aactttcttc ttcttgccat 1560 attttggatt tacaacgaac tctttctgac agccaactaa ctgtttccaa caaggacaga 1620 atttaaatgg aatatcatct acgatgttgt agattgcgtc ttcgttgtaa gaagaccaat 1680 caacattatt ttgccaataa ttatgaagcc ctaagcttct ggcccaagta gatttcccag 1740 ttcttgttgg accgacgatg tagaggctct gctttcttgt tccttcatct gttggctgga 1800 taatttttcc atccattcaa ggtcagagat agcatcttcg agggtgtaac aggtaggttg 1860 aagaagcata tatgattcgg gactaacctg aaagatgtta ggctggagcc aatctttgat 1920 tgactcatta caaagaagat caggtgaaga gggtggatga ggactgatga actcttcctg 1980 aatctcaggg aacaatttat ttgcagagta ttcaaaatac tgcaattttg tggcccagtc 2040 ataggggaat tctttacgaa tcatagagag gtactctagc tttgaagtgg agtgtgaaat 2100 aatctctctc attatttcat ctttggaagg tttcttttca gaatttccct tggaaggatt 2160 tccttggaag cttgacttcc taggaatgaa agtacctctc tcaaacacag ccagaggttc 2220 cttgagaatg taatccctga ccttgtttac tgattttgca ctctgaatgt ttgggtggaa 2280 cccttcgata tcaaagaacc ttgagtcagt gattcttacc ggtttttctg tctggagtaa 2340 tgcatgtaaa tgcatatctc cgtctttgtg tgcctcttgg gcacatatga tatacttcgg 2400 ggtccaacga ccaacgagct cccaaatcat ctgacagacg atttctggat tttctggaca 2460 gtgtggatat gttaggaacg tgttaacgtt cctgtgtgag aactgacggt tggatgagga 2520 ggaggccata tcggacgact ccgagcagct tgcgggatgg caggatggga gctcgaaact 2580 ctatatcaac cggcttgcgc cttcgaaatc cgccgctccc ccttttatag tggttgttaa 2640 tgggccggac cgggccggcc cagcaggaaa agaaggcgcg caa 2683 //