ID EU628567; SV 1; circular; genomic DNA; STD; VRL; 2689 BP. XX AC EU628567; XX DT 30-SEP-2008 (Rel. 97, Created) DT 30-SEP-2008 (Rel. 97, Last updated, Version 1) XX DE Maize streak virus isolate MSV-A1_Ng-Ile-g82-2007, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2689 RX DOI; 10.1099/vir.0.2008/003590-0. RX PUBMED; 18753214. RA Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B., RA Rybicki E.P., Peterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S., RA Windram O.P., Lefeuvre P., Lett J.M., Martin D.P.; RT "Recombination, decreased host specificity and increased mobility may have RT driven the emergence of maize streak virus as an agricultural pathogen"; RL J. Gen. Virol. 89(Pt 9):2063-2074(2008). XX RN [2] RP 1-2689 RA Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B., RA Rybicki E.P., Piterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S., RA Windram O.P., Lefeurve P., Lett J.-M.; RT ; RL Submitted (10-APR-2008) to the INSDC. RL Electron Microscope Unit, University of Cape Town, RW James Bld, RL Rondebosch, Cape Town, WP 7701, South Africa XX DR MD5; b1c6d7e016b6cb6ffd09de08ea740790. XX FH Key Location/Qualifiers FH FT source 1..2689 FT /organism="Maize streak virus" FT /host="Rottboellia cochinchinensis" FT /isolate="MSV-A1_Ng-Ile-g82-2007" FT /mol_type="genomic DNA" FT /country="Nigeria" FT /lat_lon="7.61 N 4.18 E" FT /collection_date="2007" FT /db_xref="taxon:10821" FT CDS 157..462 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:A5JLB8" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:A5JLB8" FT /protein_id="ACF40340.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT CDS 473..1207 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q6LBI6" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:Q6LBI6" FT /protein_id="ACF40341.1" FT /translation="MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1716..2534) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:A5JLI8" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5JLI8" FT /protein_id="ACF40342.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPF FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSGQQEPENLLGPEA" XX SQ Sequence 2689 BP; 684 A; 637 C; 690 G; 678 T; 0 other; taatattacc gcgccttctt ttcctgcgag ggccccctag ggcccgagcg atttgatgta 60 aagcctggtc ctgctttgta tgatttatct aaagcagccc attctaaaga atccggtccc 120 gggcactata aattgcctaa caagtgcgat tcattcatgg atccacagaa cgccctgtat 180 tatcagccgc gggtacccac agcagctccg gcatccgcag gagtgccgtg gagtcgcgta 240 ggcgaggtag ctattttgag ctttgttgca ctgatttgct tttacctgct ttacctttgg 300 gtgctgagag accttatctt agttctgaag gctcgacaag gcagatccac ggaggagctg 360 atatttggag gacaagctgt ggataggagc aaccctatcc ctaatctacc agcaccacca 420 agtcagggca atcccgggcc atttgttcca ggcacgggat aagcattcag ccatgtccac 480 gtccaagagg aagcggggag atgattcgaa ttggagtaag cgggtgacta agaagaagcc 540 ctcgtcagct gggctgaaga gggctggaag caaggccgat aggccatccc tccaaatcca 600 gacactccag catgctggga ccaccatgat aactgtccca tccggaggag tatgtgacct 660 catcaacacc tatgcccgag gatctgacga gggcaatcgc cacaccagcg agactctcac 720 gtacaagatc gccatcgact accacttcgt tgccgacgcg gcagcctgcc gctactccaa 780 caccggaacc ggtgtaatgt ggctggtgta tgacaccact cccggcggac aagctccgac 840 cccgcaaact atatttgcct accctgacac gctaaaagcg tggccggcca catggaaggt 900 gagccgggag ctgtgtcatc gcttcgtggt gaaacggcga tggttgttca acatggagac 960 cgacgggcgg attggttcgg acattcctcc ctcgaatgca agttggaagc cttgcaagcg 1020 caacatctac ttccacaagt tcacgagcgg gttgggagtg agaacgcagt ggaagaatgt 1080 aacggacgga ggagttggtg ccatccagag aggagcgttg tacatggtca ttgccccagg 1140 caatggtctt acatttactg cccatgggca gacccgtctg tactttaaga gtgttggcaa 1200 ccagtaatga ataaaaactc ccgttttatt atatctgatg aatgctgaaa gcttacatta 1260 atatgtcgtg cgatggcacg aaaagacaca cgcaatcaat acaggggggt agtcggcggg 1320 cggctaaggg tggtgctcgg cgggcagaac atcgaaaaat caagatctat ctgaatgtac 1380 tgcctccgta ggaggcagct cagggggaga ataccacttc tcccctggct gcatgatgta 1440 tatcatgcag tttgcctcga aatactccag ctgccctgga gtcatttcct tcatccaatc 1500 ttcatccgag ttggcgagga ttattgtagg cttagacttc ttctgcacct ttttcttctt 1560 accatacttg gggtttacaa tgaaatccct ctgacagcca actaactgtt tccaacaagg 1620 acagaattta aacggaatat catctacgat gttgtagatt gcgtcttcgt tgtatgaaga 1680 ccaatcaaca ttattttgcc agtaattatg aatccctagg cttctggccc aagtagattt 1740 tccggttctt gttggcccga cgatgtagag gctctgcttt cttgatcttt catctgatga 1800 ctggatacag aatccatcca ttggaggtca gaaattgcat cctcgagggt ataacaggta 1860 ggttgaagga gcatgtatgc ttcgggacta acctggaaga tgttaggctg gagccaatca 1920 ttgattgact cattacaaag taaatcaggt gaggagggtg gatgaggatt ggtgaattct 1980 tcctgaatct caggaaaaag tttatttgca gagtattcaa aatactgcaa ttttgtggac 2040 caatcaaagg gaagctcttt ctggatcatg gagaggtact cttctttgga agtagcgtgt 2100 gaaataatgt ctcgcattat ttcatcttta gaaggctttt tttcctttac ctctgaatca 2160 gattttccta ggaaggggga cttcctagga atgaaagtac ctctctcaaa cacagccaga 2220 ggttccttga gaatgtaatc cctcaccctg ttaactgact tggcactctg aatatttggg 2280 tgaaacccat ttatatcaaa gaaccttgag tcagatatcc ttaccggctt ctctgtctga 2340 agcaatgcat gtaaatgcaa acttccatct ttatgtgcct ctcgggcaca tagaatatat 2400 ttgggaatcc aacgaacaac gagctcccag atcatctggc aggcgatttc aggattttct 2460 ggacactttg gataggttag gaacgtgtta gcgttcctgt gtgagaactg acggttggat 2520 gaggaggagg ccatagccga cgacggaggc tgaggctgag ggatggcaga ctgggagctc 2580 aaaactctat agtatacctg tgcgccttcg aaatccgccg cttccttgtc ttatagtggt 2640 tgtaaacggg ccggaccggg ccggcccagc aggaaaagaa ggcgcgcac 2689 //