ID EU617327; SV 1; linear; genomic RNA; STD; VRL; 3812 BP. XX AC EU617327; XX DT 21-JUL-2008 (Rel. 96, Created) DT 21-JUL-2008 (Rel. 96, Last updated, Version 1) XX DE Arabis mosaic virus isolate Lv segment RNA2, complete sequence. XX KW . XX OS Arabis mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-3812 RX DOI; 10.1007/s00705-008-0126-6. RX PUBMED; 18563287. RA Dupuis L., Cobanov P., Bassler A., Krczal G., Wetzel T.; RT "Complete genome sequence of a virulent isolate of Arabis mosaic virus from RT privet (Ligustrum vulgare)"; RL Arch. Virol. 153(8):1611-1613(2008). XX RN [2] RP 1-3812 RA Dupuis L., Cobanov P., Bassler A., Krczal G., Wetzel T.; RT ; RL Submitted (03-APR-2008) to the INSDC. RL Alplanta - Institute for Plant Research, Rlp Agroscience, Breitenweg 71, RL Neustadt An Der Weinstrasse 67435, Germany XX DR MD5; aecd04efc0abeef686835e94dea19747. DR EuropePMC; PMC3314827; 22218961. XX CC GenBank Accession Numbers EU617326-EU617327 represent the complete CC genome of Arabis mosaic virus isolate Lv. XX FH Key Location/Qualifiers FH FT source 1..3812 FT /organism="Arabis mosaic virus" FT /segment="RNA2" FT /host="Ligustrum vulgare" FT /isolate="Lv" FT /mol_type="genomic RNA" FT /db_xref="taxon:12271" FT CDS 262..3618 FT /codon_start=1 FT /product="polyprotein 2" FT /db_xref="GOA:B4YNP8" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B4YNP8" FT /protein_id="ACF32435.1" FT /translation="MGKFYFSNRRLACYAQATNRHLGGSFEQWLQCMEDSAFKAEVKAR FT VQSEREEIRVKRLFSYPVGRGPAEDPRGVNWAYICLGTTAHWAGVPGDMVSIPKPPVAP FT KVVVPPVKVIPSPPPVPRPHFRPIGAFAPTRSGFIRATVERLTREREESRAAALFTELP FT LEYPQGAPLVVPCGFAAMRWTYHTTWRRWYDASDERALRVHPGGPALPPPPPPPPIQKP FT PSFEERLQAVLQRQSCARAFALETSLGLNMAWVGTATIPSISVCCADGRTTGGQTIAQE FT ADPINHRVASNTAPGRAQWISERRSALRRREQANSLQGLAAQTDMTFEQARNAYLGAAD FT MIEQGLPLLPPLRNAYAPRGLWRGPSTRANYTLDFRLNGIPTGQNTLEILYNPVSDEEM FT DDYRDRGMSAVVIDALEIAINPFGMPGNPTDLTVVATYGHERNMERAFIGSSSTFLGNG FT LARAIFFPGLQYSQEEPRRESIIRLYVASTNATVDADSILAAISVGTLRQHIGSLHNRT FT VASSVHAAQVQGTTLRATMMGNAVVVSPEGSLVTGTPEANVQIGGVSSMRMVGPLAWEN FT VDEPGQTFTIRNRSRPMRVNRNADVGVALPRMSTTTRGLAGRGSVQVPKDCQAGKYLKT FT LDLRDMVSGFSGIQYEKWITAGLVMPDFKVVIRYPANAFTGITWVMSFDAYNRITSSIS FT TTASPAYTLSVPHWLLHHKNGTTSCDIDYGELCGHAMWFSATTFESPKLHFTCLTGNNK FT ELAADWEFVVELYAEFEAAKTFLGRPNFIYSADAFNGSFKFLTIPPLEYDLSTTSAYKS FT VSLLLGQTLVDGTHKVYNYNNTLLSYYLGIGGVVKGKVHICSPCTYGIVLRVVSEWNGV FT TNNWNQLFKYPGCYIDEDGNFEIEIRSPYHRTPLRLLDAQAASSFTSTLNFYAISGPIA FT PSGETAKMPVVVQINEIALPDLSVPSFPNDYFLWVDFSAFTVDTEEYVIGSRFFDISST FT TSTVALGDNPFAHMIACHGLHHGILDLKLMWDLEGEFGKSSGGVTITHLCGDKATGMDG FT ASRVCALQNMGCETELYVGNFAGANPNTALNLYSRWLAIKLDKAKSMKMLRVLCKPRGN FT FEFYGRTCFKV" XX SQ Sequence 3812 BP; 891 A; 843 C; 949 G; 1129 T; 0 other; atgaaaaatt tctgtgagtt ctcatataaa cgtgaattta catcttttca aaccaggagt 60 ttaagaaact caaaattgtt ctttgccaat ccgttaagag cggaaacaaa gccaaaccgt 120 taagagcggt accaaagcga agagtttaag aaactcatca ttgccttctt tttctttctt 180 acttacgtgt tttatttatt tagcgtttgt tttgtttgtt ttataggagg agcgttttgt 240 ttctctttct tttctgccct tatgggcaaa ttttatttta gtaacaggcg tcttgcctgt 300 tacgcacagg ctacgaaccg ccacctgggt ggttcttttg aacaatggct ccagtgcatg 360 gaggactcag cctttaaggc tgaggttaaa gcccgcgtcc aatcggagcg agaggaaatc 420 cgtgttaagc ggcttttttc ctatccagtt ggcagagggc ctgctgagga cccccgtggg 480 gtcaactggg catacatatg cctggggact actgcccatt gggctggtgt tcccggggat 540 atggtgtcta ttcccaagcc tcctgtggct cccaaggtgg tggtgccacc tgtgaaggtt 600 attccttcac cgccccctgt gccaaggcct cattttaggc caattggggc gtttgcacca 660 acccggtccg ggtttatacg ggccactgtg gaaaggctca cccgggaacg ggaagagtca 720 agagctgcgg cactctttac cgaattgcca ttggagtacc ctcaaggtgc tcccttggtg 780 gtcccttgtg gctttgctgc catgagatgg acttatcata ccacctggag gcggtggtat 840 gacgccagtg atgagcgtgc tttacgcgtt catcctggtg gccctgcctt acctccaccc 900 cctccccctc ccccaatcca aaaaccaccc tcttttgagg agaggttgca ggctgtcctc 960 caaaggcagt cctgtgctag ggcttttgcc ctggaaacct cgctgggcct taatatggcc 1020 tgggtgggca cggctaccat ccccagcatt tctgtgtgct gtgctgatgg taggactact 1080 ggtgggcaaa cgattgccca ggaagctgat cctattaacc atagggttgc ttctaacaca 1140 gcccccggta gggcacaatg gatctcggag cgccgcagtg ctctgagacg gagggaacag 1200 gctaacagcc tgcagggtct tgctgctcag actgacatga catttgagca ggccaggaat 1260 gcgtatcttg gtgctgctga tatgatagag caaggcctac cgttactacc tcccttgagg 1320 aatgcttatg cacctcgtgg tctatggagg ggaccttcca ccagagccaa ttatactctt 1380 gatttcaggc ttaacggaat ccccaccgga caaaatactt tagaaatatt gtataatccg 1440 gtgtcggacg aggaaatgga tgactaccgt gacaggggta tgtcagcagt cgtgattgat 1500 gcgctggaaa ttgctatcaa tccttttgga atgccaggca atccgactga tcttactgtt 1560 gtagcaacgt atgggcacga acgtaacatg gaacgtgcct ttattggttc ttcgtctacc 1620 tttcttggaa atggtttggc gagagctatc ttctttcctg gtttacaata tagccaggaa 1680 gaacctaggc gcgaatctat tattcgcctg tatgttgctt ctaccaacgc cactgttgat 1740 gctgattcta ttcttgcggc cattagtgtg ggcactctac gccaacacat tggttcgcta 1800 cacaacagaa cagtggcgag ttctgtacac gctgctcaag tgcagggcac aaccttgaga 1860 gctactatga tgggtaatgc tgttgtagtt tctcccgagg gaagtctcgt tactggaacc 1920 cctgaagcta atgtccaaat cggaggagtt tcgagtatgc gtatggttgg tcccctggca 1980 tgggaaaatg ttgatgaacc agggcagacc tttactataa gaaaccgctc ccggcctatg 2040 cgagtaaacc ggaatgctga tgttggagtt gctcttccta gaatgagtac tacaacgcgg 2100 ggtcttgctg gtagaggttc tgtccaggta cctaaggatt gccaggcggg aaaatacttg 2160 aaaacccttg acctaagaga catggtcagt gggttttcgg gtatacagta tgagaagtgg 2220 atcactgctg gacttgttat gcctgatttt aaagtggtga ttcgctatcc agccaatgcc 2280 tttacaggta ttacgtgggt tatgagcttt gatgcctata accggattac tagcagcatt 2340 tctactactg ctagtcctgc gtatactctg tcggtccctc attggctgct gcatcataag 2400 aatgggacga cctcatgtga tattgattat ggggaacttt gtggtcacgc catgtggttt 2460 agtgccacta cttttgaaag ccccaaactt catttcacat gcctcactgg aaataacaag 2520 gagcttgctg cagattggga gtttgtagtt gagctatatg ccgagtttga ggcggcaaaa 2580 acttttcttg gaaggcccaa cttcatttat agcgctgatg cttttaatgg atctttcaag 2640 tttctgacaa tcccaccact ggaatatgac ctgagtacta ccagtgccta caagagtgtg 2700 tccctgttat tgggccagac tcttgttgat gggactcaca aggtgtataa ttataataat 2760 actcttctga gttattatct tggcattggt ggcgtggtca agggcaaagt gcatatatgt 2820 agcccttgta cttatggcat agtcctaaga gttgttagtg aatggaacgg ggtcactaac 2880 aactggaatc aacttttcaa ataccccggg tgttacatcg atgaggatgg gaattttgaa 2940 attgaaattc gttccccata tcatcgaact ccactgcgct tattggatgc acaggcagcg 3000 agctctttta cgagtacgct gaatttctat gcaatctcag ggccaattgc cccaagtgga 3060 gaaactgcta agatgccagt ggtcgtgcaa atcaatgaaa ttgcgcttcc tgatctttca 3120 gtcccatcct tccctaatga ttatttccta tgggttgact tttcagcgtt caccgtggac 3180 actgaggagt atgtgatagg gtcgaggttt tttgatattt cctcaactac tagcactgta 3240 gcccttggag ataatccttt tgcccacatg atagcttgtc atggattaca tcatggaatc 3300 cttgatctta agttaatgtg ggatttggag ggtgagtttg gtaagagctc tggtggtgtt 3360 actatcacac atttgtgtgg tgataaagcc actggcatgg atggagcttc ccgtgtgtgt 3420 gctctacaaa acatgggttg tgaaactgag ctgtatgtag ggaatttcgc tggtgctaat 3480 cctaacactg cgttaaacct gtacagccga tggcttgcta tcaagctgga taaggctaag 3540 agtatgaaaa tgctccgagt tttgtgcaag ccaagaggga actttgaatt ctatggtaga 3600 acatgtttta aggtttaatt ccctccaata gtcttgggaa tctgactata aaagacccac 3660 ttgtgttatt tttatattta gcttgtttac tgcttttgtg tgtttaattt catgcattta 3720 gtggcgacag tgtgttgttt gtcctttgga cgcacttgcc ttgttggacg caaaaagatt 3780 ttacttttct ttttactgct tttgtaaatt ac 3812 //