ID EU617326; SV 1; linear; genomic RNA; STD; VRL; 7334 BP. XX AC EU617326; XX DT 21-JUL-2008 (Rel. 96, Created) DT 21-JUL-2008 (Rel. 96, Last updated, Version 1) XX DE Arabis mosaic virus isolate Lv segment RNA1, complete sequence. XX KW . XX OS Arabis mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7334 RX DOI; 10.1007/s00705-008-0126-6. RX PUBMED; 18563287. RA Dupuis L., Cobanov P., Bassler A., Krczal G., Wetzel T.; RT "Complete genome sequence of a virulent isolate of Arabis mosaic virus from RT privet (Ligustrum vulgare)"; RL Arch. Virol. 153(8):1611-1613(2008). XX RN [2] RP 1-7334 RA Dupuis L., Cobanov P., Bassler A., Krczal G., Wetzel T.; RT ; RL Submitted (03-APR-2008) to the INSDC. RL Alplanta - Institute for Plant Research, Rlp Agroscience, Breitenweg 71, RL Neustadt An Der Weinstrasse 67435, Germany XX DR MD5; 21e571ec2a910ccb82e8a8c2a3904ce5. DR EuropePMC; PMC3314827; 22218961. XX CC GenBank Accession Numbers EU617326-EU617327 represent the complete CC genome of Arabis mosaic virus isolate Lv. XX FH Key Location/Qualifiers FH FT source 1..7334 FT /organism="Arabis mosaic virus" FT /segment="RNA1" FT /host="Ligustrum vulgare" FT /isolate="Lv" FT /mol_type="genomic RNA" FT /db_xref="taxon:12271" FT CDS 230..7087 FT /codon_start=1 FT /product="polyprotein 1" FT /db_xref="GOA:B4YNP7" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:B4YNP7" FT /protein_id="ACF32434.1" FT /translation="MWQISEGSQCCCTGKSWSNAEAKEARYVCDCLFNCRLVKVEVAPQ FT PPKSRIAPAQQKKERIAPLQNSNGRIAPTTPKSKRASVPDVPLVKQRCDVVVRVGPPAN FT LELIYPALVREEVATPPTEKVLQPTIKADIGVPVSMAPKWMVAIPKPPVKTAPEVEKTQ FT FPKGAVCYNGTNFLDAKGKVVLSEGAKRVLKGIRVAKQQRLRAARRSAACKKIRKARAL FT ALYERLSEERAFQELPGGFAGEMPVGFFSYGKTVAIPTATPKKVVSKRKRASKPSTVAV FT PVQDFSCIDAFDWGEKSFSVKEVIEDDWILIEKPVLKRQAVHSVQGRATEALTRFAASS FT GFTVKAHQKVEELALSGEAGHLIAGEFADLCLRSLVYNDAPVLSASIEELACEQDFKDA FT IELFNIELAELPTDSTTCGRFNDWAASAKTMAKGVGSLVGDLARATGAGALITFDKCLE FT YLQEKALTLCQKVFNATMAPYLSHLAEASNIIKKIWKKLGEWMESLKGKAGLALEVLAH FT HAIFALGAIVVGGVIVLVEKVLVVCKVIPSCGIVLGAFLTLFFASLGLTALECTADEIF FT KMHQCCKGAIYSMYSVKEPVCEGEGDSTTRGVLQGLDNAISALTRVGQSMISFKLGSFS FT YYAKIAQGFDQLARGKRAIGELASWLIDLVGSVYSKVSGQESTFFDELSTIVCLDVRSW FT LLKSKRVRLQVETMAIGDRITLDTISKLLEEGHKILVTAAGVPRKTSADFTMCIKEEVS FT KLEEVHQRTACAGINEGMRQFPFWVYIFGTSQSGKTTIANSVIIPSLLEEMNLPKTSVY FT SRPKTGGFWSGYARQACVKVDDFYAIEQTPSLASSMIDVVNSEPYPLDMAYLHEKGMSM FT DSPLVVTTANTVKPPTNAGITDEASFFNRRAAVIEVRRKDNTHFTPRAYDNCIEVRFLH FT NKCAYVDSEGVPQGPTVNTPMEEGWISPSEAVATLKNLLGEHVLAEEEKLMDYRERIGN FT DHPIYNAAQEFIGNMHYPGEWIDADRKKTYEIEDEGFSFLAVDGKMYKYNVLGKLNPCA FT VPPTHPNVIPWLEERTLDKVHWDVHKHIATGPRNALVACFLQGLVQDQSYVQSVEIMGK FT DSSPEQQAFFKRLSLSERIYLRLCQIRIDKVKKEQLSGPSRGTLDVLRDCMAKSKAKLA FT ENYSLLLTLVAVLVLIATAYSLISTLVGLAGCTSFAGGMVAMNQVSNASMPCSEPRLEE FT RYSARNRFVSRISRVRGDGPAKGQGEHEELVTELYYYFDGVKRLISCCWFKGRSLLMTR FT HQALAIPVGNEVQVIYADGTDRKLIWPGKQEDGSCKGYIEFPENELVVFEHARLLTMPI FT KYEKYFVDDPDRQISPNVAVKCCVARLEEGLPQFHFWNKYATARSDVHTVVDEGGSAVY FT QNKIRRHIIYAHEAKRNDCGAIAVAEIQRTPKVIAMLVSGSGNVTYSSVIPNYSSSFVR FT GDVPYVPEDGIKTNGYRKVGYLMRKDAPHVPSKTAFMKVPDEICFPYPNPKQPAILSAE FT DDRLKGTVHEGYTPIRDGMKKFAEPMHLLDEKLLDEVAGDMVQTWFDVGEFLEDVPLNT FT AINGDVDEEYFDPMAMDTSEGYPEVLQRKAGEKGKARFFVGEPGAREFVPGCGPERAYL FT SLEEECKVRVPSLISIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLL FT MKKRSHLPCQVGINPYSREWTDLYHRLAEQSDIGYNCDYKGFDGLITEQILAVVATMIN FT TGYRNPVSNQQRSNLLLAICGRLSICGNQVYETEAGIPSGCALTVVINSIFNELLMRYC FT FKKIVPPVYRECFDRCVVLITYGDDNVFTVSQSIMESFTGDALKAEMANVGVTITDGKD FT KSLATIPARPLLELEFLKRGIKKGNGGMIYAPLEKLSIMSSLVYIRSDGSDMLQKLVDN FT VNTALVELFLHQDKEYFDSVRNFYLEKLPPGSYKELTTWYQAQTFHECQLSGESNWKPQ FT GLIEISHGVGFASFVQQDGTELERHDICPGLAISGARYIAKKEEILMSLSSLLPGDVNA FT HKLELKCGDGIGRLPSKASVLAQRNPGIVMRLCKQALEEKKTLVIRDERPYIGGWAMAC FT ICGESFGFSIRSTLALYANLLGPDRKNGLAGYFSNFESPVHVKKVHAITNGEEGATELK FT EVFTLCEPKIVRASSCETRTEMLAHPSEAFPSVVLIGGISYPKEGGEPGALYSHTDVTM FT SKKNKGVYVSEAILKCCLRCPGVATKTVLQTTEIGSSLSKAHLKSLRRLQTHQCVRR" XX SQ Sequence 7334 BP; 1968 A; 1443 C; 1837 G; 2086 T; 0 other; atgaaaaatc tctgtgagtt ctcatataaa cgtgaattta catcttttca aaccaagagt 60 ttaagaaact caaaattgtt ctttgccaat ccgttaagag cggaaacaaa gccaaatcgt 120 taagagcggt accaaacgaa gagtttaaga aactcattgc tttacttttc tgtattttta 180 cgccgtattt atttagtttt catattgttt cgttaaagct ttagccacta tgtggcaaat 240 ttctgagggt tcccagtgct gttgcactgg gaaatcctgg tccaatgccg aggccaaaga 300 ggcccggtat gtctgcgatt gtctcttcaa ttgcagactc gttaaagttg aggtagcgcc 360 tcaacccccg aagagcagga tagcgcctgc tcaacagaag aaggagagga tagcgcctct 420 tcaaaactcg aatggtagga tagcgcctac cacccccaaa tccaaaaggg cttctgtgcc 480 cgacgtgcct ttggtaaaac aaaggtgcga tgttgttgtg agggttggcc cgccggccaa 540 cctagagttg atataccctg ccctcgtgcg ggaagaggtg gcaaccccac ctactgaaaa 600 ggttctgcag cctaccataa aggctgatat cggggtgcca gtttctatgg caccaaaatg 660 gatggtggct atccctaagc cacccgttaa aactgctccc gaagtggaga aaacacagtt 720 cccaaaagga gctgtgtgct ataatggcac caactttttg gatgccaagg gaaaagtcgt 780 cctatctgag ggcgcaaaga gggttcttaa gggaatccgc gttgctaagc agcaacgtct 840 tagggctgca cgcagatctg ctgcgtgtaa gaaaatccgc aaggccaggg ctctggcttt 900 gtatgagcgc ttgtctgaag agcgcgcctt ccaggagctg cctggagggt ttgctggtga 960 aatgccagtt ggctttttta gctacggtaa aaccgtagcc attcccactg ccacccctaa 1020 aaaggtggtt tccaaaagaa agagggcctc aaagccttct actgttgctg ttccagtgca 1080 ggatttttcc tgcattgatg ccttcgactg gggggagaaa tccttctccg tcaaggaagt 1140 aattgaggat gactggatcc tcattgaaaa acctgtcctg aaaaggcagg ctgtacattc 1200 tgtgcagggg agggcaactg aagcccttac tagatttgcc gcctcaagcg gctttacagt 1260 taaagcccac caaaaggtgg aggagttagc cttgtctgga gaggctggcc atttgatcgc 1320 aggggaattt gcggatctct gcttaagatc tctggtgtac aatgacgcac ctgtgttgtc 1380 cgcctctatt gaagagcttg cctgtgagca agattttaaa gatgccattg agctcttcaa 1440 tattgaactt gctgaattgc caactgattc cactacttgt gggcggttta atgattgggc 1500 cgcttctgcc aaaactatgg caaaaggagt gggctctcta gttggtgatt tagcccgtgc 1560 gactggggcc ggtgcactta tcacttttga taagtgcctc gagtatttac aagagaaagc 1620 attgacactt tgccaaaaag tgtttaatgc caccatggcc ccctacctaa gtcaccttgc 1680 tgaagcttcc aatataataa agaaaatttg gaagaaactt ggtgagtgga tggaaagctt 1740 aaagggtaaa gctgggttgg ccttggaagt gcttgcacac catgccatct ttgctcttgg 1800 agctattgtt gtgggaggag ttattgtcct cgttgagaag gtgctagtag tctgcaaagt 1860 tattccctct tgtggaattg tgctaggtgc tttcttaact ctcttctttg ccagtcttgg 1920 attgactgct cttgagtgta ccgctgatga gatttttaaa atgcatcagt gctgtaaagg 1980 tgctatttat agcatgtact cagtgaagga gcctgtgtgt gaaggtgaag gagactccac 2040 aacaagggga gttttacagg ggctagacaa tgccatatct gccctgacaa gagtcggtca 2100 aagcatgatt agcttcaagc ttgggagctt ttcctactat gctaagatcg cccaaggatt 2160 tgatcaactt gctcgaggaa aaagagcgat aggtgaactt gctagttggc tcattgatct 2220 tgtgggaagt gtttattcta aagtctctgg acaggaaagc actttctttg atgagttatc 2280 tacgatagtt tgccttgacg ttagatcgtg gctactgaaa agtaagcgcg tgagactgca 2340 agttgaaaca atggctattg gagatagaat aacgcttgat actatctcta aattgctgga 2400 agaaggtcat aaaatccttg tgactgctgc tggtgtgccc aggaaaacct ctgcagattt 2460 tacaatgtgc atcaaagagg aggtttccaa gttggaagag gtacatcaaa gaactgcctg 2520 cgccggtata aatgaaggta tgcgccagtt tccattctgg gtatacattt ttggcacttc 2580 acagtctggg aagactacta ttgcaaattc tgtcatcatt ccttctttgc tagaagagat 2640 gaatcttccc aagacttctg tgtactctag gcccaagaca gggggtttct ggagtggata 2700 tgctagacag gcgtgtgtta aagttgacga cttttatgct attgagcaaa cgcctagtct 2760 agcttcttct atgatagatg tggtgaattc tgaaccatat ccattggaca tggcctattt 2820 gcatgaaaag ggcatgtcta tggattcacc acttgttgtg accactgcta atacggtgaa 2880 gcctcctacc aatgctggta ttactgatga ggcctctttc tttaaccgtc gcgctgcagt 2940 catagaagtg aggagaaaag acaataccca ctttacaccc cgtgcatatg acaattgcat 3000 tgaagtgagg tttctgcaca acaagtgtgc atatgttgat tcggagggtg ttccccaggg 3060 gcctactgtc aataccccca tggaagaagg atggatttct cccagtgaag ctgtcgctac 3120 attgaaaaat ttgttgggag aacacgttct tgctgaagaa gagaagctga tggactacag 3180 agaaaggatt ggtaatgacc atcctatcta taatgcagct caagaattca taggtaatat 3240 gcattatcct ggagagtgga tagatgctga tcgcaagaaa acctatgaaa ttgaagatga 3300 agggttttct ttccttgctg tcgatggaaa gatgtataag tacaatgtac tcgggaaatt 3360 aaacccttgt gccgtgcctc caacacatcc caatgttatt ccctggttag aggagagaac 3420 attagacaag gtacattggg atgtgcataa acatatagcc actggtccca ggaatgctct 3480 cgtggcctgc tttctgcagg gtctcgtaca ggatcagagc tatgttcaga gtgtggagat 3540 tatgggcaaa gacagctcgc cggaacagca agcctttttc aaacgattga gcctatctga 3600 gaggatttat ctcagattgt gccagattcg gattgataag gtcaagaaag agcaattgag 3660 tgggccttca agaggaacct tagatgtcct gcgagactgt atggccaaga gtaaagctaa 3720 gcttgctgag aattattctc ttttacttac tctagttgca gttctggtac taattgccac 3780 ggcctactcg ttgatctcca cactagttgg tctagccggg tgtacaagtt ttgctggagg 3840 tatggtagcg atgaatcaag tttcaaatgc ttctatgcca tgttcagaac cccggttgga 3900 ggaaagatac tctgctagaa atcgttttgt gtcgcggatt tctagggtta gaggagacgg 3960 cccggccaag ggccagggag aacatgagga attagttact gagctctatt attattttga 4020 tggagtgaag agattgattt cttgttgttg gtttaaaggg cgctcccttc taatgacaag 4080 acaccaagcg ttggccattc ctgtcggaaa tgaagtgcaa gttatctatg ctgatggcac 4140 tgataggaaa ctcatatggc cagggaaaca agaagatgga tcatgcaaag ggtacattga 4200 attccctgaa aatgaacttg tagtgtttga gcacgctcgt cttttgacga tgcccatcaa 4260 atatgagaag tactttgttg atgatcctga tcgccaaatc tctcccaatg ttgcggtgaa 4320 atgctgcgta gctcgacttg aggaggggct cccccagttc catttttgga ataagtatgc 4380 caccgctagg agtgacgtgc atactgttgt tgatgaaggg gggagtgcag tgtaccagaa 4440 caagatcaga aggcatatta tatatgccca tgaagcaaaa agaaatgatt gcggggctat 4500 tgctgttgct gaaatacagc gtacccctaa agttattgca atgttggtct ctggttctgg 4560 gaatgtgacc tattcttctg tgataccaaa ttacagttca tcctttgtta ggggtgatgt 4620 gccttacgtg ccagaagatg ggattaaaac taatgggtat aggaaagttg ggtatttaat 4680 gcgaaaagat gccccgcatg ttccaagcaa gacggcattt atgaaagtgc cggacgaaat 4740 atgctttcct tatccaaatc cgaagcagcc tgccatccta agcgccgaag atgatcgact 4800 aaagggtact gtccatgaag ggtatacccc gatacgggat ggcatgaaga agtttgctga 4860 accaatgcac ctacttgatg agaaattact tgatgaagtg gcgggtgaca tggttcaaac 4920 gtggttcgac gttggggaat ttttagaaga cgtgcctcta aacactgcta ttaacggtga 4980 tgttgatgag gaatattttg accccatggc catggataca tctgaaggat atcctgaagt 5040 ccttcagcga aaagcgggag agaagggtaa agcccgattc tttgttgggg aacccggagc 5100 acgtgaattt gtgcccgggt gtggacctga aagagcttat ttgagtctag aagaggaatg 5160 caaagtgcgt gtcccttctc ttataagtat tgaaacccca aaagatgaaa ggcttaagag 5220 atctaagatt gaaactcctg gtactaggtt gttttctgtt ttacctttgg catacaacct 5280 actattgaga gtaaaatttt tgtctttctc tcgtttgtta atgaagaaga gaagccacct 5340 accctgccaa gtaggcatca acccgtatag tcgcgagtgg actgatctgt accatcgtct 5400 ggcagaacag tcagacattg gatacaattg cgactataag ggatttgatg gtctaatcac 5460 agagcaaatt ttggccgttg ttgcaacaat gataaataca gggtatcgca accccgttag 5520 taatcagcaa cgatccaatc ttttgttagc tatatgtggt cgactctcaa tttgtggaaa 5580 ccaggtttat gaaacggaag ctggtattcc ttcaggatgt gcattaacag ttgttataaa 5640 ctctatattc aatgaactgt taatgcgtta ctgtttcaag aagattgttc ctccagtcta 5700 ccgggaatgc tttgatagat gtgttgtgtt aatcacctat ggtgatgaca atgtttttac 5760 tgtctcacag tctatcatgg aaagcttcac cggagatgcg cttaaagccg agatggctaa 5820 tgtaggagtt acaattactg atggtaaaga caaaagtctt gccacaattc cagcgcgccc 5880 actactggaa ttggaatttt tgaagcgtgg gatcaagaag ggaaatggag gcatgattta 5940 tgctcccctt gaaaaactgt ccatcatgag ctcacttgtg tacattcgta gtgatggatc 6000 agatatgctg cagaagcttg tcgacaatgt aaatactgct ttagtcgagt tgtttttgca 6060 ccaggataag gagtattttg acagtgtccg caatttctac cttgagaagc ttcccccagg 6120 atcttataaa gaattgacaa catggtatca ggctcaaacc tttcatgaat gtcaacttag 6180 cggggaaagt aattggaaac cccagggact aatagagatt agtcatggtg ttggttttgc 6240 cagttttgtt caacaagatg gaacggagtt ggaacgccat gacatttgtc ctgggttggc 6300 tatatctgga gctagatata ttgccaagaa agaagagata ctgatgtctc ttagctccct 6360 tttgccaggt gatgtcaatg cgcacaaact tgaattaaaa tgtggtgatg gtattggccg 6420 tctcccttcc aaagctagtg tgttggccca gaggaatcct ggaattgtaa tgcggttgtg 6480 taagcaagcc cttgaagaga aaaaaaccct cgtcattcgt gatgagagac cttacattgg 6540 aggatgggct atggcttgca tttgtggaga gagttttggc ttttccatca ggagcaccct 6600 ggcattatat gccaatctgt taggtcctga tcggaaaaat ggattggctg gttatttttc 6660 gaattttgaa agtccagtcc atgtgaagaa agttcatgcc attactaatg gagaggaagg 6720 agccactgag ttgaaagagg ttttcacctt gtgtgaacca aagattgtta gggcttcttc 6780 ttgtgaaacg agaacggaaa tgttggctca cccatctgag gcatttccca gtgtggttct 6840 gattggggga attagctacc ctaaggaagg tggggaacct ggagctttat actcccacac 6900 tgatgttact atgtccaaga agaataaggg cgtgtacgtc agtgaggcca ttttgaagtg 6960 ttgtctgaga tgtcctggtg tcgccaccaa gacggttctc cagactactg aaattgggag 7020 tagtctttct aaagctcatt tgaagagttt gcgccgatta caaacgcacc agtgtgtgcg 7080 taggtagctc ttcaccaaga atggtactgg gataaccatc aataaataac ccagttttcg 7140 tactgctcat gctcttgtgg gtacgtcata tttagagcaa tttgtgttat atttatattt 7200 agcttgttta ctgcttttgt gtgtttaatt tcatgcattt agtggcgaca gtgtgttgtt 7260 tgtcctttgg acgcacttgc cttgttggac gcaaaaagat tttacttttc tttttactgc 7320 ttttgtattt tttc 7334 //