ID EU573715; SV 1; circular; genomic DNA; STD; VRL; 2738 BP. XX AC EU573715; XX DT 03-MAR-2009 (Rel. 100, Created) DT 27-OCT-2009 (Rel. 102, Last updated, Version 3) XX DE Squash leaf curl China virus - [Pumpkin:Varanasi] segment DNA-A, complete DE sequence. XX KW . XX OS Squash leaf curl China virus - [Pumpkin:Varanasi] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2738 RX DOI; 10.1007/s11262-009-0396-4. RX PUBMED; 19705268. RA Singh A.K., mishra K.K., Chattopadhyay B., Chakraborty S.; RT "Biological and molecular characterization of a begomovirus associated with RT yellow mosaic vein mosaic disease of pumpkin from Northern India"; RL Virus Genes 39(3):359-370(2009). XX RN [2] RP 1-2738 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT ; RL Submitted (19-MAR-2008) to the INSDC. RL School of Life Sciences, Jawaharlal Nehru University, New Mehrauli Road, RL New Delhi, Delhi 110 067, India XX DR MD5; f430af485969d1d5d55de254e68b1460. XX FH Key Location/Qualifiers FH FT source 1..2738 FT /organism="Squash leaf curl China virus - FT [Pumpkin:Varanasi]" FT /segment="DNA-A" FT /host="pumpkin" FT /isolate="Varanasi" FT /mol_type="genomic DNA" FT /country="India" FT /db_xref="taxon:540030" FT gene 121..459 FT /gene="AV2" FT CDS 121..459 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /note="suppressor of RNAi; may help in viral movement" FT /db_xref="GOA:C0IY53" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:C0IY53" FT /protein_id="ACE79033.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLLEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCRCPHCPRHKSKGMDQQADEQ FT KTQNVQNV" FT gene 281..1051 FT /gene="AV1" FT CDS 281..1051 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="required for viral encapsidation and vector FT transmission" FT /db_xref="GOA:C0IY54" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C0IY54" FT /protein_id="ACE79034.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(311..796) FT /gene="AC5" FT CDS complement(311..796) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:C0IY55" FT /protein_id="ACE79039.1" FT /translation="MHILHCCCARFIVEHVKNFAKILGRSCRTTITNQKKHDTVSMVFS FT LDVFVHPYLPQHIDGFHTESLPYAMCESGSSCNVTNTHDLANMRDIVPRFKGLHLTRAF FT TAPWHVGTSIHSVHSGFSVHRPVGPCLCFCDAGNGDNGTSSIGAVEVETSAYLRCGR" FT gene complement(1048..1458) FT /gene="AC3" FT CDS complement(1048..1458) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replication enhancer protein; enhances efficiency of FT viral replication" FT /db_xref="GOA:C0IY56" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C0IY56" FT /protein_id="ACE79037.1" FT /translation="MITDSRTGEYITADRAENGVYIWEVPNPLYFKIIKHDIRPCLEEH FT DIIKVHVLFNHNLRKALGLHKCVLMFQIWTGLRPPTGIFLRVFKTQVLKYLDMLGVIGI FT NNVLRAVYHVLDNVLEKTIDVWTTYDVKLNIY" FT gene complement(1193..1597) FT /gene="AC2" FT CDS complement(1193..1597) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="trans-activator protein; suppressor of RNAi" FT /db_xref="GOA:C0IY57" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C0IY57" FT /protein_id="ACE79036.1" FT /translation="MQSSSQSKNHSIPVAKESLHPKKKKNIRRRRIDLPCGCSYYMSID FT CHDHGFTHRGVHHCGSSREWRVYLGSSKSPIFQNNKTRYQTVSRRTRHNQSACTVQPQP FT AESTGTSQMCSNVPNLDGLTPSDWDFLESL" FT gene complement(1500..2585) FT /gene="AC1" FT CDS complement(1500..2585) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /note="replicase; DNA helicase; essential for viral FT replication" FT /db_xref="GOA:C0IY58" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C0IY58" FT /protein_id="ACE79035.1" FT /translation="MAPPRHFKVNAKNYFLTYPKCSLTKEEALSQLKTLETPTSKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSQSRSAHFHPNIQGAKSASDVKQYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAKAINTGNKEDALKVLKELAPKDYVLQFH FT NMNSNLDRIFPPQAEVYISPFSVSSFDRVPQELVDWVSSNVVCSAARPIRPIGIVLEGD FT SRTGKTAWARSLGPHNYLCGHLDLSPRVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWALKNAIFITIEEPL FT YSGRERIASSEEEEEHQAQTN" FT gene complement(2252..2428) FT /gene="AC4" FT CDS complement(2252..2428) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="suppressor of PTGS; may be responsible for symptom FT induction" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C0IY59" FT /protein_id="ACE79038.1" FT /translation="MGLRISTFLSSSKANFSAKITDSSTWCPKVGQHISIRTFRELNRH FT RTSNNTSTRTVTY" XX SQ Sequence 2738 BP; 747 A; 587 C; 591 G; 813 T; 0 other; accgaatggc cgcccgattt ttttatgtgg gccctcaacc aatgaaatgc acgctacatg 60 gcttaattaa tgtgtgggga ccaataaata gacttgctca ccaagttcgg atctacaaac 120 atgtgggatc cattattgca cgaatttcct gaaagcgttc atggtctaag gtgcatgcta 180 gctgtaaaat atcttctaga gatagaaaag aattattcac cagacacagt cggctacgat 240 cttgtccgag atctcatcct tgttcttcga gcaaagaact atggcgaagc gaccagcaga 300 tatcatcatt tcaacgcccg catcgaaggt acgccgacgt ctcaacttcg acagccccta 360 tggagctcgt gccgttgtcc ccattgcccg cgtcacaaaa gcaaaggcat ggaccaacag 420 gccgatgaac agaaaaccca gaatgtacag aatgtataga agtcccgacg tgccaagggg 480 ctgtgaaggc ccttgtaagg tgcagtcctt tgaatctagg cacgatgtct ctcatattgg 540 caaggtcatg tgtgttagtg acgttacacg aggaaccgga ctcacacatc gcatagggaa 600 gcgattctgt gtgaaatccg tctatgtgtt ggggaagata tggatggacg aaaacatcaa 660 gactaaaaac catactaaca gtgtcatgtt ttttttggtt cgtgatcgtc gtcctacagg 720 atctccccaa gattttggcg aagtttttaa catgttcgac aatgaaccga gcacagcaac 780 agtgaagaat atgcatcgtg atcgttatca agtcttacgg aagtggcatg cgactgtgac 840 gggaggaaca tatgcttcta gggagcaagc attagttagg aaatttgtta gagtcaataa 900 ttatgttgtt tataatcaac aagaggccgg caagtatgag aatcatactg aaaatgcatt 960 aatgttgtat atggcctgta ctcacgcatc aaatcctgta tacgcgacat tgaaaatccg 1020 gatctatttt tatgattcgg taacaaatta atatatattc aatttcacgt catatgttgt 1080 ccatacatca attgtttttt ccaatacatt atccaaaaca tgataaactg ctcttaatac 1140 attattaata ccaatcaccc ccaacatatc caggtactta aggacctggg tcttaaagac 1200 tctcaagaaa atcccagtcg gagggcgtaa gcccgtccag atttggaaca ttagaacaca 1260 tttgtgaagt cccagtgctt tccgcaggtt gtggttgaac agtacatgca ctttgattat 1320 gtcgtgttct tctagacacg gtctgatatc gtgttttatt attttgaaat ataggggatt 1380 tggaacttcc cagatataca cgccattctc tgctcgatcc gcagtgatgt actcccctgt 1440 gcgtgaatcc gtgatcatgg caatctattg acatgtaata tgagcatccg cacggtagat 1500 caattcgtct gcgcctgatg ttcttcttct tcttcggatg aagcgattct ttcgcgaccg 1560 gaatagagtg gttcttcgat tgtgatgaag attgcattct ttaatgccca ctgtttcagt 1620 gctgcattct tctcttcatc gagatattct ttgtaactgc tgttcggtcc tttattgcag 1680 aggaagatgg tgggaattcc acctttaatc atgactggct ttccgtactt cgtgttgctt 1740 tgccagtctc tttgggcccc catgaattct ttaaaatgct ttagatagtg gggatcaacg 1800 tcatcaatga cgttgtacca agcatcatta ttgtacactc tcgggcttag atctaggtgg 1860 ccgcacagat aattgtgcgg tcccaaagaa cgcgcccacg cagttttgcc cgttctacta 1920 tcaccctcta aaactatccc tatgggtcta atcggccgcg cagcggaaca taccacgtta 1980 cttgaaaccc aatcgacgag ttcttgcgga actctgtcga aggatgaaac tgaaaaagga 2040 gaaatataca cctcagcttg aggtggaaaa atacgatcta aattggaatt catattatgg 2100 aattgcaaaa cataatcttt cggtgctaat tctttcaata ctttcaacgc atcttcctta 2160 ttccctgtat tgattgcctt tgcgtacgcg tcgtttgctg tttgttgtcc tccacgagca 2220 gatcggccat cgatctggaa aacaccccat tctaatacgt caccgtcctt gtcgatgtat 2280 tgtttgacgt ccgatgccga tttagctccc tgaatgttcg gatggaaatg tgctgaccga 2340 ctttgggaca ccaagtcgaa gaatctgtta tttttgcact gaaatttgcc ttcgaactgg 2400 ataagaacgt ggatatgcgg agacccatct tcgtgtagct ctctgcaaat tttgataaat 2460 ttcttcgaag ttggagtttc tagggttttc aattgggaaa gtgcctcttc tttggttaga 2520 gagcactttg gatacgtgag gaaatagttt ttcgcattta ctttgaaatg cctaggagga 2580 gccatcaaaa cgcgcgtttt gattcggggt ctctccaaaa ctatggtata ttggtgtatg 2640 gagtctcata tatactttgg acaccaaatg gcaaaatggt aattatgcaa ataattactt 2700 taattcaaaa tgactaaagc ggccattcgt ataatatt 2738 //