ID EU571218; SV 1; linear; genomic RNA; STD; VRL; 6301 BP. XX AC EU571218; XX DT 13-APR-2008 (Rel. 95, Created) DT 04-APR-2012 (Rel. 112, Last updated, Version 2) XX DE Youcai mosaic virus isolate Wh, complete genome. XX KW . XX OS Youcai mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6301 RA Yan L., Xu Z., Chen K.; RT "Genomic Sequence Analysis of Oilseed Rape Mosaic Virus Wuhan Isolate"; RL Unpublished. XX RN [2] RP 1-6301 RA Yan L., Xu Z., Chen K.; RT ; RL Submitted (17-MAR-2008) to the INSDC. RL Oil Crops Research Institute, 2 Xudong 2nd Road, Wuhan, Hubei 430062, China XX DR MD5; 3eee617cff9bfaa02ef534a5640bebdd. DR RFAM; RF00225; IRES_Tobamo. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6301 FT /organism="Youcai mosaic virus" FT /lab_host="oilrape seed" FT /isolate="Wh" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="2004" FT /db_xref="taxon:228578" FT CDS 69..4859 FT /codon_start=1 FT /transl_except=(pos:3375..3377,aa:OTHER) FT /product="replicase read-through product" FT /db_xref="GOA:B2LS13" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B2LS13" FT /protein_id="ACB73170.1" FT /translation="MAQFQQTVNMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKSVSTEQTLLASNAYPEFEISFTHTQHAVHSLAGGLRTLELEYLMMQVPFGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIFSYLSRLDRQKCPVPEYQ FT RAAFNNYAENPHFVHCDRPFQQCELSTVNGADTYAIALHSIYDIPADEFGAALLRKNVK FT ICYAAFHFHENMLLDCDSVTLEDIGATFQRAGDKLNFFFHNESTLNYTHNFSNIIKYVC FT KTFFPASQRYVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYKTSVDSEEFYKAMDDAWE FT YKKTLAMLNSERTIFKDSAAMNFWFPKVRDMVIIPLFDASITTGRMSRREVLVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLVT FT KLSHVQDEIVLKKFQKFDATAKELIWSSLCDALKGVIPSVKETLARGGFVKLAEESLEI FT KIPELYCTFTDRLVLEYKRTEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLDAF FT KELCQKKNVDPDVAAKVVVAIMNSELTLPFKKPTEEEVAEALSEKLVQNEGLSLSNNAP FT FPCVSNLKEGLVPAYGMCPTGSNFDRVDMDISEFHLKSVDAVKKGAMMSAVYTGKIKVQ FT QMKNYVDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAKCHAW FT GVAEDANHKLVIVLLNWDEGKPVCDETWFRLAVSSDSLVYSDMGKLKTLTSCCRDGEPP FT EPTAKVLVDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGIVRADKDNV FT RTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRVA FT NFPYPSHFAKLVVDEKEDRRITLRCPADVTYFLNQKYDGAVMCTSSVERSVSAEVVRGK FT GALNPITLPLEGKILTFTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLEI FT ISRASPHVLVALTRHTARCKYYTVVLDPMVNVISELGKLSNFILDMYTVESGTQXQLQI FT DTVFKGTNLFVPTPKSGDWRDMQFYYDTLLPGNSTILNEFDAVTMNLRDISLNVKDCRI FT DFSKSVQVPKERPVFMKPKLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTA FT SLVVEKFWDAYVIKEFSGTDGMAMTKESFSRWLSKQESSTVGQLADFNFVDLPAVDEYK FT HMIKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLERIDTSKFLFY FT TRKTPTQIEEFFSDLDSSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDDWLAEV FT WRQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMDKVIKAAFC FT GDDSLIYIPKGLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYYDPLK FT LISKLGCKHIRDEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAEVHKTAVGGAFVYCS FT IIKYLSDKRLFKDLFFV" FT CDS 69..3377 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:B2LS14" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B2LS14" FT /protein_id="ACB73171.1" FT /translation="MAQFQQTVNMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKSVSTEQTLLASNAYPEFEISFTHTQHAVHSLAGGLRTLELEYLMMQVPFGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIFSYLSRLDRQKCPVPEYQ FT RAAFNNYAENPHFVHCDRPFQQCELSTVNGADTYAIALHSIYDIPADEFGAALLRKNVK FT ICYAAFHFHENMLLDCDSVTLEDIGATFQRAGDKLNFFFHNESTLNYTHNFSNIIKYVC FT KTFFPASQRYVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYKTSVDSEEFYKAMDDAWE FT YKKTLAMLNSERTIFKDSAAMNFWFPKVRDMVIIPLFDASITTGRMSRREVLVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLVT FT KLSHVQDEIVLKKFQKFDATAKELIWSSLCDALKGVIPSVKETLARGGFVKLAEESLEI FT KIPELYCTFTDRLVLEYKRTEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLDAF FT KELCQKKNVDPDVAAKVVVAIMNSELTLPFKKPTEEEVAEALSEKLVQNEGLSLSNNAP FT FPCVSNLKEGLVPAYGMCPTGSNFDRVDMDISEFHLKSVDAVKKGAMMSAVYTGKIKVQ FT QMKNYVDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAKCHAW FT GVAEDANHKLVIVLLNWDEGKPVCDETWFRLAVSSDSLVYSDMGKLKTLTSCCRDGEPP FT EPTAKVLVDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGIVRADKDNV FT RTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRVA FT NFPYPSHFAKLVVDEKEDRRITLRCPADVTYFLNQKYDGAVMCTSSVERSVSAEVVRGK FT GALNPITLPLEGKILTFTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLEI FT ISRASPHVLVALTRHTARCKYYTVVLDPMVNVISELGKLSNFILDMYTVESGTQ" FT CDS 4871..5668 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:B2LS15" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:B2LS15" FT /protein_id="ACB73172.1" FT /translation="MSYEPKVSDFLALTKKEEILPKALTRLKTVSISTKDVISVKESES FT LCDIDLLVNVPLDKYRYVGVLGVVFTGEWLVPDFVKGGVTVSVIDKRLENSKECIIGTY FT RAAAKDRRFQFKLVPNYFVSVADAKRKPWQVHVRIQNLKIEAGWQPLALEVVSVAMVTN FT NVVVKGLREKVIAVNDPNVEGFEGVVDDFVDSVAAFKAIDSFRKKKKKIGGKDVSNNKY FT RYRPETYAGPDSLQYKEGNVLQHHELESVPVFRSNVGRAHSDA" FT CDS 5403..5522 FT /codon_start=1 FT /product="putative 4K protein" FT /db_xref="UniProtKB/TrEMBL:B2LS16" FT /protein_id="ACB73173.1" FT /translation="MIRTSKVSKVWLTISSIRLLHSRRLTVSERKRKRLEERM" FT CDS 5592..6065 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:B2LS17" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:B2LS17" FT /protein_id="ACB73174.1" FT /translation="MSYNITNSNQYQYFAAMWAEPTAMLNQCVSALSQSYQTQAARDTV FT RQQFSNLLSAIVTPNQRFPEAGYRVYINSAVLKPLYEALMKSFDTRNRIIETEEESRPS FT ASEVANATQRVDDATVAIRSQIQLLLNELSNGHGLMNRAEFEVILPWTTAPAT" XX SQ Sequence 6301 BP; 1810 A; 1189 C; 1569 G; 1733 T; 0 other; gttttaattt tattgcaaca acaacaacaa attacaataa caacaaaaca aatacaaaca 60 acaacaacat ggcacaattt caacaaacag taaacatgca aacactgcag gctgccgcgg 120 ggcgcaacag cctggtgaat gatttagctt cacgacgcgt ttatgataat gccgtcgagg 180 agctgaatgc tcgctcgaga cgccctaagg ttcatttctc caaatcagtg tccacggaac 240 agacgctgtt agcttcaaac gcttatccgg agtttgagat ttcctttact catacccaac 300 atgccgtgca ttcccttgcg ggcggcttga ggactcttga gttggagtat ctcatgatgc 360 aagttccgtt tggttctcta acgtacgaca tcggtggtaa ctttgctgcg caccttttta 420 agggacgcga ctatgttcac tgctgtatgc cgaatttgga cgtccgtgat atagctcgtc 480 atgaagggca caaggaggca attttcagtt acctttctcg cctagatagg cagaagtgtc 540 ccgtccccga atatcagaga gcggcgttca ataattacgc ggagaatcct catttcgttc 600 attgcgaccg accattccag cagtgtgagc ttagcaccgt caacggcgca gacacttacg 660 ctattgcgct tcatagtata tacgatattc ctgctgatga gttcggtgct gcgctactta 720 ggaagaatgt caagatttgt tacgcggctt tccattttca cgaaaacatg ctcctagact 780 gtgactctgt caccctggag gatattggag ccacattcca gcgtgctggt gacaagttaa 840 acttcttctt ccacaacgag agcacactta actacaccca taattttagt aatataatta 900 aatacgtgtg taagaccttc tttcccgcga gtcagaggta tgtgtaccat aaggagtttt 960 tagttactag agtcaatacg tggtattgta agtttactag agtcgatact tttactcttt 1020 tccgtggtgt gtacaagaca agtgtagata gtgaagagtt ctataaggct atggacgacg 1080 cgtgggagta caagaagaca ttggctatgc tcaattccga gagaaccatc tttaaggata 1140 gcgctgccat gaatttctgg tttccgaagg ttagagatat ggttatcata cctctctttg 1200 atgcatctat tacaactgga aggatgtcga gaagggaagt attggtaaat aaggactttg 1260 tttacacggt ccttaaccat attaaaacct atcaagcaaa agccttaaca tacgctaatg 1320 tgttgtcttt cgtcgagtct attaggtcta gagtcataat taacggtgtc actgccaggt 1380 cggaatggga tactgacaag gcaatcttag gtccgttagc catgacattt ttccttgtca 1440 cgaagttgag tcatgttcag gacgaaatcg tcctcaagaa gttccaaaag tttgacgcca 1500 ctgccaaaga actgatttgg tcaagtctct gcgatgccct gaagggggtg ataccctcgg 1560 tcaaggagac acttgcacgt ggtggttttg tcaagcttgc tgaagagagt ttagaaatca 1620 aaattccaga gttatactgc acttttaccg acaggttggt gcttgagtat aaaaggacag 1680 aggagtttca gtcgtgtgat ctgtccaaac ctttggaaga gtctgagaaa tactataatg 1740 cgttatccga gctatccgtg cttgaaaatc tcgactcgtt tgatttggat gcctttaaag 1800 agctgtgtca aaagaagaac gtcgacccgg atgttgccgc gaaggtggtg gtggcaatta 1860 tgaatagtga attgacgtta ccgttcaaga aacctacaga agaggaagtt gctgaggcgc 1920 ttagtgaaaa gttggtacag aatgaggggt tgagtttgag caacaacgca cctttcccat 1980 gtgtgagcaa cctcaaggaa ggtttggttc cggcgtacgg aatgtgtccg acaggtagta 2040 acttcgacag agtggatatg gacatatctg agttccatct caagagtgta gatgcagtta 2100 aaaaaggggc tatgatgtca gcggtgtaca cgggaaagat taaggttcaa cagatgaaga 2160 actacgtcga ttacctaagt gcctcattgt cagctacggt ctcaaacctc tgtaaagtgc 2220 ttagggatgt tcacggtgtt gaccctgaat ctcaagagaa gtcgggtgtg tgggatgtga 2280 gaagaggacg ctggctattg aaacctaacg cgaagtgtca cgcttggggt gttgcggaag 2340 atgctaacca caagttagtt atcgtgttac ttaactggga tgaagggaaa cctgtctgtg 2400 atgagacatg gttcagattg gcagtttcta gcgactcttt agtgtactcg gacatgggta 2460 aactcaagac gttaacgtca tgttgtagag atggtgagcc tccagaacct acggccaaag 2520 tgctcgtcga tggtgttcca ggctgtggaa aaacaaagga aatcttagag aaggtcaact 2580 tttccgaaga tttagtgtta gtccctggaa aagaggcgtc aaaaatgatt attcgaagag 2640 caaaccaggc aggcattgtg agagctgaca aggataacgt aaggacggta gattccttct 2700 taatgcaccc tccgaaaagg gtgttcaaaa ggttgtttat cgatgaagga ctaatgttgc 2760 atacgggttg tgttaacttt ttaacgttgc tatctcactg tgatgtggcg tacgtttatg 2820 gtgacacaca acagattccc tttatctgta gggttgcgaa ttttccttat cctagtcact 2880 ttgcgaagct tgttgtggac gagaaggaag acagaaggat cacactcagg tgtccggcgg 2940 acgttacgta cttcttaaac cagaaatacg atggcgcagt aatgtgtaca agctctgtgg 3000 agaggtcggt tagtgcggaa gttgtgagag gaaaaggtgc tttaaaccca ataactttgc 3060 cgttagaggg aaaaattctc actttcactc aagccgataa gttcgaattg ttagataagg 3120 gctacaagga tgtaaacacg gttcatgaag ttcaaggcga aacgtacgaa aagacggcta 3180 ttgttcggtt aacagcaact cccttggaga tcatatcaag agcgtcacct catgttttgg 3240 tggcgttgac aaggcacacc gcaagatgta aatattacac agttgtgcta gacccaatgg 3300 ttaatgtgat ttctgaatta gggaaactgt ccaacttcat tcttgacatg tacacggtgg 3360 agtcgggaac ccaatagcaa ttacagatcg acacagtgtt caaggggaca aatttgttcg 3420 tcccgacgcc caagtcagga gattggcgag acatgcagtt ctattatgac actcttcttc 3480 ccggaaacag tactattctt aacgaatttg atgctgtgac gatgaatttg agggatattt 3540 ccttaaatgt taaggactgt aggatcgact tctcaaaatc tgtgcaagtg ccgaaagaac 3600 gaccggtttt catgaaaccc aaattgagga cggcggcaga aatgccacgt actgcgggtc 3660 tacttgaaaa tcttgtcgcg atgattaaaa gaaacatgaa cgcaccagat ttgacaggga 3720 cgattgatat agaggacact gcgtcgttag tagttgaaaa gttttgggat gcgtatgtga 3780 taaaagaatt cagcggaacg gatggtatgg ctatgacgaa ggaaagtttt tctagatggc 3840 tctctaaaca agagtcgtct acggttggtc agttagcgga tttcaacttt gtggatttgc 3900 cggcggtgga cgaatataag catatgatca aaagccagcc caaacagaaa ttagacttga 3960 gcattcagga cgaataccct gcgttgcaga ccatagtcta tcattcaaaa aagatcaatg 4020 cgattttcgg tcctatgttt tcagagttaa cgagaatgct tcttgaaaga atagatactt 4080 caaagtttct gttctacacc aggaagacac ctacgcagat tgaagagttt ttctctgatt 4140 tagattcgtc acaagcgatg gagattttgg agctcgacat ttcaaagtac gacaagtcac 4200 aaaacgagtt ccattgcgca gttgagtaca aaatatggga aaagcttggt attgacgatt 4260 ggttggcgga ggtgtggaga caaggacaca gaaaaacgac tctcaaagat tacacggctg 4320 gtataaagac atgtttgtgg taccaaagga aaagtggtga tgtgactacc tttattggga 4380 acacaattat cattgctgcg tgtttgagct ctatgatccc gatggataaa gtaatcaagg 4440 cggctttctg cggtgacgac agtttgatat atatcccgaa aggtctagac ctaccggata 4500 ttcaagccgg agccaacctt acgtggaact ttgaagccaa attgttcagg aaaaagtacg 4560 ggtatttttg cggtcgttac gttattcacc acgatagagg agccattgta tattatgatc 4620 cgcttaagtt gatatctaaa ttaggatgta aacatattag agatgaagtt cacttagaag 4680 agttacgtag gtctctgtgt gatgtaacta gtaatttaaa taattgtgcg tatttttcac 4740 agttagatga ggccgttgcc gaggttcata agaccgcggt tggcggagcg tttgtttact 4800 gtagtataat taaatatttg tcagataaaa ggttgtttaa agatttgttt tttgtttgac 4860 taagtcgata atgtcttacg agccaaaagt aagtgacttc cttgccctta cgaaaaagga 4920 ggaaatttta cccaaggctt tgacgagatt aaagactgtc tctattagta ctaaggatgt 4980 tatatctgtt aaggagtctg agtccctgtg tgatatagat ttgttagtga atgtgccatt 5040 agataagtat agatacgtgg gtgttttggg tgttgttttt accggtgaat ggctagtgcc 5100 ggatttcgtt aaaggtgggg taacagtgag cgtgattgat aaacggcttg aaaactccaa 5160 ggagtgcata attggtacgt acagagctgc tgcgaaggac agaaggttcc agttcaagct 5220 ggttccaaat tacttcgtgt ccgttgcgga tgccaagcga aaaccgtggc aagttcatgt 5280 gcgtattcaa aatttgaaga ttgaagctgg atggcaacct ctagctctag aggtggtttc 5340 tgttgccatg gtcactaata acgtggttgt taagggtttg agggaaaagg tcatcgcagt 5400 gaatgatccg aacgtcgaag gtttcgaagg tgtggttgac gatttcgtcg attcggttgc 5460 tgcattcaag gcgattgaca gtttcagaaa gaaaaagaaa aagattggag gaaaggatgt 5520 aagtaataat aagtatagat atagaccgga gacatacgcc ggtcctgatt cgttacaata 5580 taaagaagga aatgtcttac aacatcacga actcgaatca gtaccagtat ttcgcagcaa 5640 tgtgggcaga gcccacagcg atgcttaacc agtgtgtgtc tgcgttgtcg caatcgtacc 5700 aaactcaagc ggcgagagat actgttagac agcagttctc taaccttttg agtgcgattg 5760 tgacaccgaa ccagcggttt ccagaagcag gataccgggt gtatattaat tcagcagttc 5820 taaaaccgtt gtacgaagct cttatgaagt cctttgatac tagaaatagg atcattgaaa 5880 ctgaagaaga gtcgcgtcca tcggcttccg aagtagctaa tgcaacacaa cgtgttgatg 5940 atgcgactgt ggccattagg agtcaaattc agcttttgct gaatgagctc tccaacggac 6000 atggtctaat gaacagggca gagttcgagg ttatattacc ttggactact gcgccagcta 6060 cataggcgtg gtgcacacga tagtgcatag tgtttttctc tccacttaaa tcgaagagat 6120 atacttacgg tgtaattccg caagggtggc gtaaaccaaa ttacgcaatg ttttaggttc 6180 catttaaatc gaaacctgtt atttcctgga tcacctgtta acgtgcgcgt ggcgcatatt 6240 acagtgggaa taactaaaag tgagaggttc gaatcctccc taaccccggg taggggccca 6300 a 6301 //