ID EU569831; SV 1; circular; genomic DNA; STD; VRL; 8463 BP. XX AC EU569831; XX DT 09-APR-2008 (Rel. 95, Created) DT 09-APR-2008 (Rel. 95, Last updated, Version 1) XX DE Eupatorium vein clearing virus, complete genome. XX KW . XX OS Eupatorium vein clearing virus OC Viruses; Ortervirales; Caulimoviridae; Caulimovirus; OC unclassified Caulimovirus. XX RN [1] RP 1-8463 RA Zhang L., Lockhart B.E., Olszewski N.E.; RT "Biological and genomic characterization of a caulimo-like virus related to RT a vein clearing disease of Eupatorium"; RL Unpublished. XX RN [2] RP 1-8463 RA Zhang L., Lockhart B.E., Olszewski N.E.; RT ; RL Submitted (15-MAR-2008) to the INSDC. RL Plant Pathology, University of Minnesota, 1991 Upper Buford Circle, St. RL Paul, MN 55108, USA XX DR MD5; 0a91fcbc5e0c7622ce1078cb9ad4763e. XX FH Key Location/Qualifiers FH FT source 1..8463 FT /organism="Eupatorium vein clearing virus" FT /mol_type="genomic DNA" FT /db_xref="taxon:515444" FT CDS 45..1019 FT /codon_start=1 FT /product="movement protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:B2D1M6" FT /protein_id="ACB69769.1" FT /translation="MSSSHENEADASQHISSNEEYIFSNENENGFIGTMTIHQDQLRKI FT NQLQLSLKSDSIFSRSILDRLSRKNEIIYCVNTQEKSIDIKDVEGTVYLPLVTKQEIDN FT KLSKIKSSIAVKINTLHLGAVKILIKAHFREGINSPIKMALLDNRLIDREDSLIGAAKG FT NLAYGKFMFTVYPKYAINLNDRNLNRTLSFIHKFDRENFMEKGSLVFSVTYLIGYALTN FT SHHSIDYRTKPKIEIDQLFLDIGKVHEHNFCNIVEDDNSWVMNVHRNKPELGQPSQNLR FT IKGNNISIGNSSSGTIPTQRQLLEQVAKNVDRLGNQLQYINGE" FT CDS 1009..1488 FT /codon_start=1 FT /product="aphid transmission factor" FT /db_xref="GOA:B2D1M7" FT /db_xref="InterPro:IPR004917" FT /db_xref="UniProtKB/TrEMBL:B2D1M7" FT /protein_id="ACB69770.1" FT /translation="MANKMLTYPHIYKKGLIYEFKSLDDKSNPRRYTFSSDENSAGLKP FT IIRHLNNINQITARNWLKLTKLLAYLGLEKDKTNGLSKKPSPWDQLLKDIEKIFHRSSS FT SKGNDQTKLLEKLEEISHKLPKAENLVTREELSGIIKSFHEELKEVKSMIKSVIG" FT CDS 1491..1871 FT /codon_start=1 FT /product="virion-associated protein" FT /db_xref="GOA:B2D1M8" FT /db_xref="InterPro:IPR004986" FT /db_xref="UniProtKB/TrEMBL:B2D1M8" FT /protein_id="ACB69771.1" FT /translation="MTTIVELGAKLDALSQKVNELLKEKQVDKTESAAAKIIKDLSDRI FT EKDKQELISLIKSCPCGRHDDPKTPPEPTKKGPEEPGTSKDPNPPKPVIPYSYPNWNVG FT DEAYGSSKGPNPPSWPPRYTFN" FT CDS 1871..3439 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:B2D1M9" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001988" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/TrEMBL:B2D1M9" FT /protein_id="ACB69772.1" FT /translation="MLTDIQKVTNLFFDSWKEGERHEAFTSEIAKIMSLPEEEANLMLR FT NNSHLRGIFQLDDPQNLFQLTELEEEQSSPVYDSAPEWDEYDDDYILVITNNAHSDDGY FT NTDDTINVTIPSDTDEEEEEINLGNLRPEIFQDDEASSGVFNESGLSGGPSTSRPQPRP FT NMGDPMRLKPDTGTQVLNLDCTTSFSGRRALIELWKKEMDIILLTGKIRTAEELIMLVD FT YKTAGNVNAAIKGYSWNRQFSPADLLEAVRKVLYTVFLGEDHATQEALEVAVRIANAKS FT IMTNLKLCNICNVDEFFCTFEKYMFRIPIGEHPEWVQMYLRKIPFVGEQAYNQFMANAP FT ETSKPSLAAAHRVVKDLLNQKCLDALQTKKLKKFSTKCCPKLIPQNLEIGCPAPKKWTN FT RKKKSYRKSSKQRSMTKSYRGKRRKTTYQPRKYFRKKSAKTDKKKNCPKGKSSCKCWIC FT NMEGHYANDCPERNKNSKTVKFLQTLDQMGYEPVEDIFDGEQELFYFDEVEPGETSEEE FT SSEDE" FT CDS 3432..5456 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:B2D1N0" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR000588" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:B2D1N0" FT /protein_id="ACB69773.1" FT /translation="MSKRNLTNPNSIYILGTFQFPGYKIIKIHCLVDTGASMCIASRYI FT IPPELWKPTKKVHKVKTANGQVTIDKVCLSQVITVAGKEFLIPTIYQLNTGIDMVLGNN FT FLNLYGPFIQFTNCIILHLRDNPKTSVRVTKVTKAYAYGKPGFIQSMKKGSKVKPPTPE FT NISRLTDKIVSFSGGESSEDTTKTNFENDFLKTENIFEIQSTSEIEELLELACSENPLD FT PEKSKGLLTASIKLIDPNKIIRVKPIPYPPNIRQEFDIQIKELLAMNLIVPSKSPHMSP FT AFMVNKGAEQRRGKMRMVVNYKALNDATIGDAHNIPNRDSLMALISGKRIFSSFDCKSG FT FWQVLLDKPSQELTAFTCPQGHYQWLVMPFGLKQAPAIFQRHMQIALNEHSAYSCVYID FT DILVFSENEKDHEIHVSKVLNRCINLGIILSKKKSQLFKETIDFLGISIDKGTHSPKPH FT ILENIHNFPERFKDVNQCRKFLGIITYAMRYIPELSRKRMFLQDKLKKNVPWTWTSEDT FT RLLQKLKLSLKEFPKLHIPQPGQQLILETDASQKYWGGILKAEVIHSNNEITEEICCYA FT SGTFKQAELNYHSNEKEILAVIRSIQSFPVYLTPVEFIVRTDNKTMEHFLTSKFELGTK FT SGRLVRWQMWFKHYNFKVEHIKGTSNFLADYLSREYNEI" FT CDS 5558..6946 FT /codon_start=1 FT /product="inclusion body/transactivation factor" FT /db_xref="InterPro:IPR009027" FT /db_xref="InterPro:IPR011320" FT /db_xref="InterPro:IPR037056" FT /db_xref="UniProtKB/TrEMBL:B2D1N1" FT /protein_id="ACB69774.1" FT /translation="METVEHLKLKQQALQLELELIQTKLKLAELEQQCPSTAVNVEVPA FT MEKVIKPPTNKGKGLASPPQTVGGKDQSNPLTVNVLPKDIGEGSSSSKAEQICLKPNQG FT ITAPVKSGIHISEAFHEVVKIQSSTKKQFYYVVFNTANAGIYPSWDLAKAATNKVSGVL FT HKRFNSFHDARKAADFYTEDNGGERLQFISNANALKPSYADVASKKINDINKKKVLGSL FT PQKKVEEPKDDESVQGFEATLEMQDFIYLRDMARSANKKSILEGKFFTTDKKDISMFNF FT VPGANPELVYEAFCYGLVSQIYPAENLLELRSFPNDLVKAVKQFRKKITSKPNALIYLK FT ITSSIPTWDESYQLLSLPVRIIEIGLCKKANYHDSIQQKDDGENDLHKLAADRYSKVLD FT KAHSFYQESKVFVNFTDEYVLMYSKTNKVIPEDHAIKIRKYQDGITKSTFLGFHSETVV FT GPGP" XX SQ Sequence 8463 BP; 3115 A; 1619 C; 1539 G; 2190 T; 0 other; tggtatcaga gccatattta gatcaatcct cggttgactg aacaatgagc tcaagccatg 60 agaatgaagc tgacgcttct caacacatat cttctaacga agaatacatc ttctctaacg 120 agaatgaaaa tggatttatt ggtacaatga ctattcatca ggaccaatta agaaagataa 180 atcaactaca gctctcgctg aaaagtgatt caatctttag tcgaagcatc ctcgacagat 240 tatctcgcaa aaacgagatc atctattgtg ttaacacaca agaaaaatcc attgacatta 300 aagatgttga aggaacagtc tatttaccgt tagtaactaa acaggaaata gataacaagc 360 taagtaagat aaaatcttct atagcagtaa aaatcaatac acttcattta ggagcagtaa 420 agattttaat aaaagcgcat tttcgtgaag gaattaattc accaataaaa atggcacttt 480 tagataaccg cctaatagac agagaagact ctctaatagg tgcagccaaa ggaaacttgg 540 cttatggtaa attcatgttt acagtatacc caaagtatgc tataaatttg aatgaccgaa 600 atctgaatag gacacttagt tttattcaca aattcgacag agaaaacttc atggagaagg 660 gatctctagt attctcagta acgtacctta tcggctacgc actgactaat agtcatcatt 720 cgattgacta tcgtacaaaa cctaaaatag aaatagatca actatttcta gacataggaa 780 aagttcatga acataacttc tgcaacattg ttgaagatga taactcttgg gttatgaatg 840 ttcatagaaa caaaccagaa ttgggacagc cttcccaaaa tctgcgtata aaaggaaata 900 acatttccat tggaaacagt tcttctggaa caattccaac tcaaagacag ctgctcgaac 960 aagtagctaa aaacgttgat agacttggaa atcagctcca gtatatcaat ggcgaataag 1020 atgttgactt atccgcatat ctacaaaaag ggtttgatct acgaattcaa atccctcgat 1080 gataaaagca acccccgaag gtatactttt tcatcagatg aaaacagtgc tggattaaaa 1140 cctataatcc gacacctaaa caacattaac caaatcaccg ctaggaattg gttaaaacta 1200 accaagttac ttgcatatct tggattagaa aaagataaga cgaacggtct atctaagaag 1260 ccgtcccctt gggaccaact tctaaaagat atcgagaaga tatttcacag atcatcatcc 1320 tccaaaggaa atgatcagac caaactcctt gaaaaactcg aggaaatctc tcataaatta 1380 cctaaggcag aaaacctggt aactagagaa gaacttagtg gaataattaa atcatttcac 1440 gaagaattaa aagaggtaaa atcaatgata aaatctgtaa taggataatc atgactacca 1500 tagtggaatt aggagccaaa ttagacgccc tatcccagaa ggttaacgaa cttctgaaag 1560 agaagcaagt tgacaagacc gaatcggctg cagctaagat catcaaagat ctatctgacc 1620 gaatagagaa ggataagcaa gaacttatct ctctaatcaa gagttgtccg tgcggcaggc 1680 atgacgaccc taagactcct ccggaaccta ccaaaaaggg accagaagag cctggaactt 1740 cgaaggaccc taatcctccg aaaccagtaa ttccatattc ctacccaaat tggaatgttg 1800 gtgatgaagc ttatggttcc tccaaaggac caaatcctcc atcctggcca cctagatata 1860 cgtttaacta atgttaaccg atatccagaa ggtaaccaat ctgtttttcg acagttggaa 1920 agaaggagaa agacacgaag ctttcacttc agaaatagca aaaattatgt ctcttcccga 1980 agaagaagct aatttaatgc taagaaataa ttctcaccta agaggaatat ttcaacttga 2040 cgatcctcag aatctatttc agctcactga attagaggaa gaacaatcgt ctccagtcta 2100 tgactcagct ccggagtggg atgagtatga cgacgattac atcttagtta taaccaacaa 2160 cgcacatagc gacgatggat ataatacaga tgacaccatc aatgtcacga ttccctctga 2220 cactgatgaa gaagaagaag agattaactt aggaaatctc agacctgaaa tttttcagga 2280 tgacgaagcc tccagcggag tcttcaatga atcaggtttg tctggcggac ctagcactag 2340 tagaccccag cctagaccaa acatgggaga tcccatgaga ctcaaaccag atacaggaac 2400 ccaagttcta aatctggatt gtactacttc cttttccggg agaagagctc tcatcgagct 2460 atggaaaaag gaaatggaca taattctttt aaccggtaaa atcagaaccg ctgaagaatt 2520 aattatgctt gtagattaca agaccgcagg taatgtaaat gcagcaataa aaggctattc 2580 ttggaataga caattttctc cagctgacct tttggaagct gttagaaaag tcctttacac 2640 agtattctta ggtgaagatc atgccaccca agaagctcta gaagtcgcag tacgaattgc 2700 taatgcaaaa agtattatga ctaatctgaa actttgcaac atatgcaacg ttgatgaatt 2760 cttctgtaca tttgaaaaat atatgttcag aattcctata ggagaacatc cggaatgggt 2820 ccagatgtat cttagaaaaa ttccttttgt aggagaacaa gcgtataacc agtttatggc 2880 taacgcacca gaaacctcta agcccagcct agcagcagcg catagagtag tcaaagacct 2940 tctaaaccaa aaatgtttag atgctctaca gactaagaaa ctgaagaaat tcagtactaa 3000 atgttgtcca aaactgattc ctcagaattt agaaattggt tgcccagcac ccaagaaatg 3060 gacaaacaga aagaagaaat cctacaggaa gtcttcaaag caacgatcaa tgactaaaag 3120 ttatcgtggc aaaagacgaa aaactaccta ccaacccagg aagtattttc gaaagaaatc 3180 agctaaaact gataagaaaa agaactgccc aaaaggcaaa agttcatgca aatgttggat 3240 ttgcaacatg gaaggtcatt acgctaatga ctgcccagaa agaaataaaa acagtaaaac 3300 tgttaaattt ctacaaaccc tagatcaaat gggttatgaa ccagtcgaag atatcttcga 3360 tggtgaacaa gagttatttt acttcgatga agtagaacct ggagaaactt cggaagaaga 3420 atcctcagaa gatgagtaag agaaatctta ctaatccaaa ctctatatat attctaggaa 3480 cattccagtt tccaggatat aaaatcatca agatccactg tcttgttgat acaggtgcaa 3540 gtatgtgtat cgcttctcga tatatcatac ctccagaatt gtggaaacca acgaagaagg 3600 ttcacaaggt aaaaactgct aatggtcaag taactataga taaagtttgt ttgtctcagg 3660 ttataactgt tgcaggaaaa gaatttctaa tcccaacaat ctaccagtta aacacaggta 3720 tcgacatggt tttaggaaat aattttctaa atctgtatgg tccatttata cagtttacaa 3780 attgtattat cttacattta agagataatc caaaaacaag cgttcgagtt actaaggtaa 3840 ccaaagctta tgcttacgga aaaccaggtt ttatccaaag catgaaaaag ggatcgaagg 3900 taaaacctcc gactccagaa aatatcagta gactcaccga taaaatcgtt tccttttcag 3960 ggggggaaag tagtgaggat acaacaaaaa caaattttga aaacgatttt ctcaaaacag 4020 aaaacatttt tgaaatacaa agcacttctg aaatagaaga actccttgaa ctagcatgtt 4080 ctgagaaccc attagaccca gaaaagtcta aaggattgtt aactgctagc attaagctta 4140 ttgaccctaa taaaattatt agagttaaac ctattcctta tccgcccaat atcaggcaag 4200 aatttgatat tcaaattaag gaattacttg ctatgaacct aatagttcca agcaaatcac 4260 ctcatatgag tccggccttt atggtaaaca aaggtgccga acaaagaaga ggaaaaatga 4320 gaatggttgt caattacaaa gcattaaacg atgctacaat tggtgacgct cataatatcc 4380 ctaatagaga cagccttatg gctctaatta gtggaaaaag gattttcagt tcatttgact 4440 gtaagtctgg attttggcaa gtcctcttgg acaaaccatc acaggaatta actgccttta 4500 cgtgccccca aggacactac caatggttag ttatgccctt cggccttaaa caagccccgg 4560 caatattcca aaggcatatg cagattgctc tcaacgaaca ttcagcatat agttgtgtct 4620 atatagatga catcctagtt ttctcagaaa atgagaagga tcatgagatt cacgtctcaa 4680 aggtgttaaa cagatgtatc aatttaggta taattctatc taaaaagaaa tcacaactgt 4740 ttaaagaaac tatagatttc ttaggaatat ctattgacaa aggtacacat tcaccaaaac 4800 cacatattct tgaaaatata cacaattttc ctgaaaggtt taaagatgta aatcaatgta 4860 gaaaattctt aggaattatt acatatgcta tgagatatat cccagaattg tctcgaaaga 4920 gaatgttttt acaggataaa ctcaaaaaga atgtcccatg gacatggact tccgaagata 4980 caaggcttct ccaaaagcta aaattatctt tgaaagaatt tccaaaattg cacattccgc 5040 aaccaggaca gcagctgatt ttagaaacag atgcctctca aaagtattgg ggaggaattc 5100 taaaagcaga agtaatccat tcaaacaatg agattacaga agaaatttgt tgctatgctt 5160 caggaacctt taaacaggca gaactgaact atcatagtaa tgaaaaagaa atactcgcgg 5220 taatacgcag tatccaaagt tttccagttt acttaactcc ggttgagttt attgttagaa 5280 ctgataataa aactatggaa cattttctaa cctctaagtt cgaattagga acaaaaagtg 5340 ggagattagt tcgatggcag atgtggttta aacattataa ttttaaagtt gaacacatca 5400 agggtactag caattttctt gcagattatc tttcaagaga atataatgag atctaaaata 5460 actgatttct ttattgcaga aaattggcaa atacaaatcc caaggctaac gccccggaca 5520 gaaatactcc tcaaagagga acagaaattc ctgaaatatg gaaacagttg agcatcttaa 5580 gctcaaacaa caggctttac agcttgaatt ggaattaatc caaacaaaac tcaaactcgc 5640 agagttagag caacaatgcc cctctacagc agtaaatgta gaagttccag caatggaaaa 5700 ggttattaaa ccaccaacca ataaaggtaa aggtttagct agtccaccac aaacggtagg 5760 tggtaaagac cagtcaaatc cgttgacggt taatgtctta ccaaaagaca taggtgaagg 5820 ttcatcttca tcaaaggctg aacagatatg tttaaagcct aatcagggaa taacagcccc 5880 tgtaaaatct ggaattcaca tttcagaagc ctttcacgag gttgtgaaga ttcaatcttc 5940 aacaaagaaa caattttatt atgttgtctt taatacagct aatgcaggaa tctatccttc 6000 atgggattta gctaaagccg caacaaataa agtttcaggt gtcctccaca agagatttaa 6060 ttcttttcat gacgccagaa aagccgcaga cttctacaca gaagataacg gtggtgaacg 6120 attgcagttc atatctaatg ctaacgcatt aaaaccttct tatgccgatg tagcatctaa 6180 aaagatcaac gacatcaaca agaagaaagt attgggatcg ctccctcaga aaaaggtcga 6240 agaaccaaaa gacgatgagt ctgttcaagg ttttgaagct actctcgaga tgcaagattt 6300 catctatctc agagatatgg cacgtagtgc taacaaaaag tctatccttg aaggcaagtt 6360 cttcaccaca gacaaaaagg acatcagcat gttcaatttt gttccaggag caaacccaga 6420 actagtctat gaagcattct gttatggctt ggtatctcaa atctacccag cagagaatct 6480 tctagaactt cgcagtttcc ccaatgactt ggtgaaagca gtgaagcagt ttaggaagaa 6540 aatcacttcc aaaccaaatg ctctgatcta cctcaagatc accagcagca tcccgacctg 6600 ggacgagtct tatcaactcc tctcacttcc agtcaggata attgaaattg gcctctgcaa 6660 gaaagccaat tatcatgata gcattcagca gaaagatgat ggagaaaatg atcttcacaa 6720 attagcagct gaccgctaca gcaaagtctt ggacaaagct catagcttct accaggaaag 6780 caaagtcttc gtaaatttta cggacgaata cgtactcatg tattcaaaga cgaacaaggt 6840 cataccagaa gaccatgcta tcaagatacg gaaataccaa gacggtatta cgaaatctac 6900 attcctcgga ttccattcgg agaccgtagt agggcccggg ccctagcccc actcagaaaa 6960 gcttgtgcca actgcaaagc aaatgaggct ggtccctcca ctaactccac cagcaagaaa 7020 gagataaagc aagagctggc atccacaatt attggacccc caccacgtga agatattgcg 7080 ggaaaataat taaaggaatc tttagaaacg tcatccatga cgttttaaat gtatccagat 7140 ccttcctatg tatctataaa taggaagtta catttcattg gagagggagg cgccttggag 7200 agagcaggcg aattaagaat caaggttttt aataaccatg tgtgagtagg aactcctaga 7260 gagtttagtg tgtttgtaat ataaccttcg ggttttataa tcaataaaag aatgtttgta 7320 taatcttctt tgtgcaaact accccatatg tttatcaaga tagcttaagc aggagctctg 7380 gaaggagttg ttctcgtctg aatagcccac aggttggaaa gtctaagagt accgctaggc 7440 gaggaggccg tagggaagag tgacgagtac gcgccgggtt gacaattgaa ctatccagaa 7500 ggaagaactg cagcagcttg aaaggtatca ttaaggtagt aagcacatac tgattttact 7560 ataacaatct tttgattatt taatccagaa gaaggatata tgaacatcac actatcctct 7620 ctaatttata aaaattgaat tttcaaaata aaattctatc cgatgtatga aaatacagaa 7680 caaacgtttc tttggaaaca aataaatatt ttcgaaagtt ttcttaaaac taagaaaaga 7740 atttcattac aaatgaaatt acaaatgcta gtagctgata aagcaactcg cagaagcttg 7800 gaaacagctt taaaactaag aatgcttcaa gaagcaagct tagaacaaac tttagtaatc 7860 ctttacggaa aattactaag caactgaaat gtcttgggac aaaccagact atttcaaagg 7920 tctcaaaaag gagatcgaat ttcttaataa tgagattaaa tcctctaggg aatttattgc 7980 tcactataaa gaacacatca gaacgagcga aagccgtgct gttagagcca cattaacctg 8040 gctagttgat tctgaaacca catatatgga atttcagaaa caagaattag aaaaatataa 8100 aagacaaatc ttttaatatt ttcttaaaaa tgtcttcata ccaaaagaat atgaaagatc 8160 aaattgtttt cataaaatct caaatcaaga ttttaaaaca acaaattaaa gaaacccaaa 8220 ataaaaagga ttctttaagt aatgccaaaa gcattcgaat cagaggactc aagtataaac 8280 ttgaatcttt tgaaaaagaa cttaaagttc ttgaagaaca ggtcttctag acaggacttc 8340 atgaaccctg ttgatatgaa ctcccgttca aattccgcag aaagccgttc cacttcttag 8400 gaagaaacga gcaaatacaa aacgatggtt agacaaaact ctgagtcaga cccccgtttt 8460 cct 8463 //