ID   EU556733; SV 1; linear; genomic RNA; STD; VRL; 1371 BP.
XX
AC   EU556733;
XX
DT   05-APR-2008 (Rel. 95, Created)
DT   24-DEC-2009 (Rel. 103, Last updated, Version 2)
XX
DE   Papaya ringspot virus isolate New Delhi helper component proteinase gene,
DE   partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1371
RX   DOI; 10.1007/s12033-009-9205-5.
RX   PUBMED; 19672730.
RA   Mangrauthia S.K., Singh P., Praveen S.;
RT   "Genomics of helper component proteinase reveals effective strategy for
RT   papaya ringspot virus resistance";
RL   Mol. Biotechnol. 44(1):22-29(2010).
XX
RN   [2]
RP   1-1371
RA   Mangrauthia S.K., Jain R.K., Praveen S.;
RT   "Helper component proteinase from PRSV-W biotype";
RL   Unpublished.
XX
RN   [3]
RP   1-1371
RA   Mangrauthia S.K., Jain R.K., Praveen S.;
RT   ;
RL   Submitted (10-MAR-2008) to the INSDC.
RL   Plant Pathology, Indian Agricultural Research Institute, Pusa, New Delhi,
RL   New Delhi 110012, India
XX
DR   MD5; 529a0f734272f729a1e48d68d02314fd.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1371
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="New Delhi"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: PRSV-W"
FT                   /db_xref="taxon:12205"
FT   CDS             <1..>1371
FT                   /codon_start=1
FT                   /product="helper component proteinase"
FT                   /note="Hc-Pro"
FT                   /db_xref="GOA:B2CZ54"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:B2CZ54"
FT                   /protein_id="ACB47030.1"
FT                   /translation="NDVAEKFWLGFNRAFLRHRKPTDHTCTSDMDVTMCGEVAALATII
FT                   IFRCHKITCNTCMSRVKGRVIDEVGEDLNCELERLRETLSSYGGSFGHVSTLLDQLNRV
FT                   LNARNLNDGAFKEIAKKIDEKKESPWTHMTAINNTLIKGSLATGYEFERASDSLREIVR
FT                   WHLKRTESIKAGSVESFRNKRSGKAHFNPALTCDNQLDRNGNFLWGERQYHAKRFFANY
FT                   FEKIDHSKGYEYYSQRQNPNGIRKIAIGNLIFSTNLERFRQQMVEHHIDQGPITRECIA
FT                   LRNNNYVHVCSCVTLDDGTPATSELKTPTKNHIVLGNSGDPKYVDLPTLESDSMYIAQK
FT                   GYCYMNIFLAMLINIPENEAKDFTKRVRDLVGSKLGEWPTMLDVATCANQLIIFHPDAA
FT                   NAELPRILVDHKQKTMHVIDSFGSVDSGYHILKANTVNQLIQFAREPLDSEIEALHCG"
XX
SQ   Sequence 1371 BP; 419 A; 262 C; 324 G; 366 T; 0 other;
     aatgatgtgg ctgaaaaatt ctggctcggt ttcaataggg cttttctgcg acacagaaaa        60
     ccaacggacc acacttgcac gtctgacatg gatgtcacga tgtgtgggga ggtggcggct       120
     cttgcaacta taattatttt ccgatgtcac aagataactt gcaacacttg tatgagcaga       180
     gtaaagggga gagtcattga cgaagttggt gaggatttga actgtgagct cgaacgttta       240
     cgtgaaactc tttcgtcata tggagggtct ttcgggcatg tctcaacatt gcttgatcaa       300
     ctcaacagag ttttaaatgc gcggaacttg aacgatggag cttttaaaga aattgcaaag       360
     aagattgatg agaagaaaga gagcccttgg actcacatga cagccatcaa taacacgctc       420
     atcaaaggtt cgctagcaac tggctacgaa tttgaaagag cgtctgatag ccttcgagag       480
     attgtgaggt ggcacctcaa aagaactgaa tcaataaagg ctggcagtgt tgaaagtttc       540
     agaaataagc gttctggaaa agctcatttt aatccagctc ttacgtgtga taatcaattg       600
     gacagaaatg ggaatttctt atggggtgaa aggcaatatc acgccaaaag attcttcgca       660
     aattactttg agaaaattga tcacagtaag ggttatgagt actacagcca acgccaaaac       720
     ccaaatggta tcaggaaaat tgccattggc aatttaatat tttcgacaaa tttggagagg       780
     tttcggcagc aaatggttga acaccacatt gatcaagggc caatcactcg tgagtgcatt       840
     gcattgcgca ataataatta tgttcatgta tgtagctgtg ttactttaga tgacggaact       900
     ccagcaacaa gtgagttgaa gactcctacc aagaatcata tcgttcttgg taattctggt       960
     gatcctaagt acgtagactt gccgactctg gagtccgatt cgatgtacat agcccagaaa      1020
     ggttactgct acatgaacat ctttttagcg atgctcataa atatacctga gaatgaggcg      1080
     aaggacttta caaagagagt tcgtgatctc gtgggctcaa aacttggtga atggccaaca      1140
     atgttagatg tggcgacgtg cgcgaatcag cttattatct tccatcctga cgctgccaat      1200
     gcagaattgc cgcgaatctt agtcgatcat aagcagaaaa caatgcatgt tattgactcg      1260
     tttggttctg tggattccgg ctaccacata ttgaaggcaa acacagttaa tcaattgatt      1320
     cagttcgctc gagaaccgct cgacagcgaa attgaagcac tacattgtgg g               1371
//