ID EU553489; SV 1; linear; genomic RNA; STD; VRL; 6495 BP. XX AC EU553489; XX DT 01-JAN-2009 (Rel. 98, Created) DT 15-SEP-2010 (Rel. 106, Last updated, Version 3) XX DE Citrus tatter leaf virus polyprotein (ORF1) and putative movement protein DE (ORF2) genes, complete cds. XX KW . XX OS Citrus tatter leaf virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; OC Capillovirus. XX RN [1] RP 1-6495 RX DOI; 10.1016/j.virol.2008.12.024. RX PUBMED; 19155038. RA Tatineni S., Afunian M.R., Gowda S., Hilf M.E., Bar-Joseph M., Dawson W.O.; RT "Characterization of the 5'- and 3'-terminal subgenomic RNAs produced by a RT capillovirus: Evidence for a CP subgenomic RNA"; RL Virology 385(2):521-528(2009). XX RN [2] RP 1-6495 RX DOI; 10.1094/PHYTO-99-4-0423. RX PUBMED; 19271984. RA Tatineni S., Afunian M.R., Hilf M.E., Gowda S., Dawson W.O., Garnsey S.M.; RT "Molecular characterization of Citrus tatter leaf virus historically RT associated with Meyer lemon trees: complete genome sequence and development RT of biologically active in vitro transcripts"; RL Phytopathology 99(4):423-431(2009). XX RN [3] RP 1-6495 RA Tatineni S., Afunian M., Hilf M.E., Gowda S., Garnsey S.M., Dawson W.O.; RT ; RL Submitted (07-MAR-2008) to the INSDC. RL Dept. of Plant Pathology, CREC, 700 Experiment Station Road, Lake Alfred, RL FL 33850, USA XX DR MD5; 066610126a29bb7462668b4a855ab2b1. XX FH Key Location/Qualifiers FH FT source 1..6495 FT /organism="Citrus tatter leaf virus" FT /host="Meyer lemon" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:33759" FT 5'UTR <1..36 FT gene 37..6354 FT /gene="ORF1" FT CDS 37..6354 FT /codon_start=1 FT /gene="ORF1" FT /product="polyprotein" FT /note="replicase and coat protein in C-terminus" FT /db_xref="GOA:B8QHP8" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008745" FT /db_xref="InterPro:IPR008879" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:B8QHP8" FT /protein_id="ACD88337.1" FT /translation="MAFTYRNPLEIAINKLPSKQSDQLLALTTDEIEKTLEVTNRFFSF FT SITPEDQELLTKHGLTLAPIGFKSHSHPISKMVENHLLYICVPSLLSSFKSVAFFSLRE FT SKVNSFLKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGDVPFDSFRDRVIGLRDQCLERN FT KFPKVLFLHDELHFLSPFDVAFLFETIPEIDRVVATTVFPIELLLGDKVSKEPRVYTYK FT VHGSSFSFYPDGVASECYEQNIANSKWPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDR FT GRACNEFNHFDKPSCLLSEEMRLLTKRFDEAVINRSTVSSLSTYMACLKAANAASAVAK FT LRQLEKRDLYPDELNFVYSFGEHFKNFGMRDDFDISVLQWVKDKFCQVMPHFISASFFE FT PTEFHLNMRKLLNDLATKGIEVPLSVIILDKVNFIETRFHSRMFDIAQAIGVNLSHLGR FT RFDYETESEEYFSDGGYLFIPSKVNPDRNWILNSDPLKVDYFKLRRARRFRLKRDFLDL FT ISKGMAPKKQLFLELPCNFESKSEIIKASLTQGMENKEGKAEEETPRVACTPMSTEDGQ FT GFEGSIPIDLINPFEPEKIELPRRKRKNDCVFKAIAAHLGIESQDLLNFLVNEDISDEL FT LECIEEDKGLSHEMIEEVLITKGLSMVYTSDFKEMAVLNRKYGVNGKMYCTIKGNHCEL FT SSKECFVRLLKEGGEAQMSNENLNADSMFDLGKFVHSRERAVKLAKSMARGATGLLNDF FT DPGFCKSMVTISELFPENFSSAVGLRLGFAGSGKTHKVLQWINYTPSVKRMFISPRRML FT ADEVEGQLKGTSCQVHTWETALKKIDGTFMEVFVDEIGLYPPGYLTLLQMCAFRRIVKG FT QSERILREKLVELSKSCLNIRCFGDPLQLRYYSAEDANLLDKTHEIDLMVRTIKHKYLL FT QGYRFGQWFQELLSMPTRMDESKFSRRFFADISSVKIEEYGLILVAKREDKGVFAGRVP FT VATVSESQGMTINKRVLICLDQNLFAGGANAAIVAITRSKTGFDFILKGNSLKEVQRMA FT QKTIWQFIIEGKSIPMERIVNMNPGASFYESPLDVGNSSIQDKASHDLFIMPFINLAEE FT EVDPEEITGDVVEPVEWFKCHIPVFDTDPMLAEIFDKVAAKEKREFQSILGFSNQFLDM FT EKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFESQGKEL FT LSEFLSMLPFEFKVNIKDIESGEKSFLEKRKLKSEKMWANHAERSDIDWKLDHVFLFMK FT SQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFF FT CLDSFVTKNAGVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKL FT TLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDDMCSLSSLR FT RRRGEKATRLLKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLK FT ECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVKNSKLLTGLSKSLIFEIGE FT GIGSEWQSSMSTTSSKRLSQQTLKLMRSPPLSCTKMQPFLSQMCSTASKGLNQTLRCHP FT GLAMDWCFQISNSLMTLKSTPLEKRVTNTSTYTMESSWLESKQCCQTLEEWRGESSCMT FT ELAWTQGEATSVRICSNLSPTVVILDLDLNTVFPQLTLIWQKDSGLEWISTAHSMNRTQ FT NCLLLILGLLTDVSILLDSLKQKLVIQGGLRKLSAVVKHSNLMKRSKWPSWITNPRCFW FT RRVHQMCTLKKDYLEVTKLEGHVLFLQKGGQTQNYRKREDLGPSQQELKDSERMSLEDV FT LQQARRHRVGVYLWKTHIDPGKEILTVPPPEGFKEGESFEGRELYLLLCNHYCKYLFGN FT IAVFGSSDKTQFPAVGFDTPPVHYNLTSSPKEKETEEQKKAREGTSGEKTKIWRIDLSN FT IVPELKTFAATSKQNSLNECTFRKLCEPFADLAREFLHERWSKGLATNIYKKWPKAFEK FT SPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVFEAGSESNLELEG" FT gene 4788..5750 FT /gene="ORF2" FT CDS 4788..5750 FT /codon_start=1 FT /gene="ORF2" FT /product="putative movement protein" FT /db_xref="GOA:B8QHP9" FT /db_xref="InterPro:IPR001815" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:B8QHP9" FT /protein_id="ACD88338.1" FT /translation="MAIVNVNHFLKEVESTDLKIDAISSSELYKDATFFKPDVLNCIKR FT FESNVKVSSRSGDGLVLSDFKLLDDTEIDSIRKKSNKYKYLHYGVILVGIKAMLPNFRG FT MEGRVIVYDGACLDPGRGHICSYLFKFESDCCYFGLRPEHCLSTTDANLAKRFRFRVDF FT DCPQYEQDTELFALDIGVAYRCVNSARFLETKTGDSGWASQAISGCEALKFNEEIKMAI FT LDHKSPLFLEEGAPNVHIEKRLFRGDKVRRSRSISAKRGPNSKLQEKRGFRSLSARIER FT FGKDEFGRRTSTSEAPPGRSISVEDPYRPGKGNSDGSSP" FT 3'UTR 6355..>6495 XX SQ Sequence 6495 BP; 1983 A; 1176 C; 1486 G; 1850 T; 0 other; aaatttaaca gcgcttaatt tccgcgcatt acgtcaatgg ctttcactta cagaaacccc 60 ctcgaaattg ctatcaacaa acttccaagc aaacaatcag atcaattgct tgctttaacc 120 acagacgaga ttgaaaagac cttagaagtg actaaccgct tcttttcttt ttcaatcacc 180 ccggaggatc aagaattgtt aaccaaacat ggtttgacac ttgcacctat tggattcaag 240 tcacattccc atccaatatc caaaatggta gaaaatcacc ttttgtacat ttgtgtgcct 300 agtcttttgt cttcttttaa gtcagtagcc tttttttccc ttagagaaag caaagttaat 360 agcttcttga aaatgcattc agtcttttca cacggaaaaa tcaaatctct aggtatgtac 420 aatgccatta ttgatggaaa agacaaatat agatatggtg atgtcccctt cgactcattc 480 agagatagag tgattggtct cagagaccaa tgccttgaac gtaataagtt tccaaaagtc 540 ctttttctcc acgatgaatt gcacttcctt agcccctttg atgtcgcctt cttatttgaa 600 acgattccgg aaattgatag ggttgttgcg acaactgtgt tcccaattga actgcttctt 660 ggggataagg tttcaaaaga acctagagtt tacacttaca aggttcatgg ctcttctttc 720 tctttttacc ctgatggtgt ggcttctgaa tgttatgaac aaaacattgc aaattctaag 780 tggcctttta cctgcagtgg cattcaatgg gctaacagaa agataagggt taccaaactg 840 cagagtctct ttgctcacca cgtcttttca tttgatagag ggagggcctg caatgaattc 900 aatcacttcg acaaaccaag ctgtttgctt tctgaagaaa tgcgcctttt gaccaaaagg 960 ttcgatgaag cagtgatcaa cagaagcacg gtttctagtc ttagcactta tatggcttgt 1020 cttaaggctg caaatgcagc ttcagcagtt gcaaagttga ggcagctaga gaaaagggat 1080 ctttacccag atgagttaaa ctttgtttat tcctttgggg aacacttcaa aaattttggg 1140 atgagggatg atttcgatat ttcagttttg cagtgggtga aggacaaatt ttgtcaagtc 1200 atgccccatt ttatctccgc cagttttttt gaacctacag agttccactt aaatatgagg 1260 aagttattga acgatctggc aactaaagga attgaagttc ctctttcagt tatcattttg 1320 gacaaggtga attttattga aactaggttt cactccagaa tgtttgatat tgcccaggct 1380 attggagtca atttaagcca ccttggacga agatttgact atgagactga aagtgaggaa 1440 tacttctctg atggtggtta cctttttatt ccctcaaagg tcaacccaga tagaaactgg 1500 attctaaatt cagacccact gaaagttgac tattttaaat tgagaagggc cagaaggttt 1560 agactgaaaa gagatttcct cgacctcata tctaaaggga tggcccctaa aaaacagctc 1620 tttttagagt tgccctgcaa cttcgagtca aaatctgaaa tcattaaagc aagtttgact 1680 cagggaatgg agaacaaaga gggcaaagca gaagaggaaa cgcctagagt cgcgtgtacc 1740 cccatgtcca ctgaagatgg gcaaggtttc gaaggttcaa ttccaatcga cttgataaat 1800 ccctttgaac ctgagaagat tgagcttcca agaaggaaaa ggaaaaatga ctgtgttttc 1860 aaagccatag ccgctcattt ggggattgag tctcaagatc ttttaaattt tttggtcaac 1920 gaagacatat cagatgaact gctagaatgt attgaggagg ataaaggtct gtcacatgag 1980 atgattgagg aagtgctcat aaccaaaggt ctttcaatgg tttacacttc tgatttcaaa 2040 gagatggcgg tcctcaatag gaagtatgga gttaacggga aaatgtactg tacaataaaa 2100 ggtaatcact gtgagttgag ctcaaaggag tgttttgtaa gactgctaaa ggagggtggt 2160 gaggctcaaa tgtctaatga gaatttgaat gctgattcta tgtttgacct cggaaaattt 2220 gtgcacagca gggaacgagc agtcaagcta gccaaatcta tggctagggg ggcgactggt 2280 cttttaaatg attttgaccc tggcttttgc aagagcatgg taaccatttc tgagttgttc 2340 ccggaaaatt tttcctctgc cgttggctta aggctgggtt ttgctggttc tggaaaaacc 2400 cacaaggttc ttcagtggat taactacact ccaagcgtga agagaatgtt tattagtcca 2460 aggaggatgt tggctgatga agttgagggt caactcaagg ggacatcttg ccaagttcat 2520 acttgggaga ccgccctaaa gaaaatagat gggacattta tggaagtctt tgttgatgaa 2580 ataggtctat atccacctgg gtatctcaca ttgttgcaaa tgtgtgcctt taggagaatc 2640 gtgaaaggac aaagtgaaag aattctgaga gagaaacttg ttgagctatc aaagagttgt 2700 ttaaacataa gatgctttgg cgacccactg caactacgat actactccgc tgaagatgca 2760 aatcttttgg acaaaaccca cgagattgat ttaatggtga ggacaattaa acacaagtac 2820 cttttgcagg ggtatagatt tggccagtgg tttcaagaac tattaagcat gcccaccagg 2880 atggacgaat caaaattctc aagaagattt tttgctgaca tttctagtgt aaagattgag 2940 gagtatgggc tcattctagt agcaaagaga gaagataaag gagtttttgc cggaagggtg 3000 ccagtggcca cagtcagtga gtcccaggga atgacaatca ataaaagggt gttaatatgt 3060 ttggaccaaa atctttttgc tgggggggcc aatgcagcaa ttgttgcaat aacaaggtcc 3120 aagactggat ttgatttcat tctcaaaggg aattcactaa aagaggtgca aaggatggca 3180 caaaaaacga tatggcaatt tataatcgag ggtaaaagca tcccaatgga gaggatagtg 3240 aacatgaatc ccggagcaag tttctatgaa agccctttgg atgttggaaa ttcatcaatt 3300 caggacaagg cttcacatga cctgtttata atgcccttta ttaatttggc tgaggaggaa 3360 gttgatccag aagaaatcac tggagacgtt gttgaacctg tcgagtggtt taaatgtcac 3420 ataccagttt ttgacacgga cccaatgctt gctgaaatct ttgacaaggt ggctgcaaaa 3480 gagaagcgtg agtttcagtc aatacttggt ttttccaatc aattccttga catggaaaaa 3540 aacgggtgca aaatagatat attgcctttt gcaaggcaaa atgtttttcc acaccaccag 3600 gcttcagatg acgtcacttt ttgggcaggt gttcaaaaaa gaataagaaa atctaactgg 3660 agaagagaaa agtcaaagtt tgaagaattt gaaagtcaag ggaaagagct tctttcagag 3720 ttcttgtcaa tgctgccatt tgaattcaag gtaaacatca aggacattga aagcggagaa 3780 aaaagctttc tggagaaaag gaaattgaaa tccgaaaaaa tgtgggccaa ccatgcagaa 3840 aggtctgaca tagattggaa gcttgatcac gtctttctct ttatgaaatc acagtactgc 3900 acgaaggaag ggaaaatgtt cactgaagca aaagctggcc aaaccttggc atgtttccaa 3960 cacattgttc tatttaggtt tggccctatg ctaagggcga ttgaaagtgc ttttttgagg 4020 agctgtggag attcatatta tatacattct ggaaagaatt tcttttgtct ggacagcttt 4080 gtcacaaaaa atgcgggagt gtttgacgga ttctccattg aatctgacta cacagcgttt 4140 gattcatctc aagaccatgt cattcttgca tttgaaatgg cattgctaca atatctcggc 4200 gtttcaaagg agtttcaact agactacttg agattgaaat tgactcttgg gtgcaggctt 4260 gggtcattag ccataatgag gttcaccgga gaattctgta cctttttatt caacacattt 4320 gccaacatgc tctttaccca gctaaagtac aaaattgatc cgagaaggca cagaatttta 4380 tttgctggag acgacatgtg ttctctgagt tctctaagga gaagaagggg agaaaaagca 4440 acaaggcttt tgaaaagctt ttccctcacg gctgtagaag aggtcaggaa gttcccaatg 4500 ttctgtgggt ggtatttgag cccatatgga ataatcaagt ccccaaaact attatgggct 4560 aggattaaaa tgatgagtga aagacaactt ttaaaagagt gtgtagacaa ctacttgttt 4620 gaagcaatat tcgcctacag attaggtgag aggctgtaca caatcttgaa agaagaagat 4680 tttgagtatc actaccttgt cattaggttt tttgtcaaaa actcaaagtt gttaacggga 4740 ctcagtaaaa gcctgatttt tgagattgga gaaggaatag ggtcggaatg gcaatcgtca 4800 atgtcaacca cttcctcaaa gaggttgagt caacagacct taaaattgat gcgatctcct 4860 cctctgagtt gtacaaagat gcaacctttt ttaagccaga tgtgctcaac tgcatcaaaa 4920 ggtttgaatc aaacgttaag gtgtcatccc ggtctggcga tggattggtg ctttcagatt 4980 tcaaactcct tgatgacact gaaatcgact ccattagaaa aaagagtaac aaatacaagt 5040 acctacacta tggagtcatc ttggttggaa tcaaagcaat gctgccaaac tttagaggaa 5100 tggaggggag agtcatcgtg tatgacggag cttgcctgga cccagggaga ggccacatct 5160 gttcgtattt gttcaaattt gagtccgact gttgttattt tggacttaga cctgaacact 5220 gtctttccac aactgacgct aatttggcaa aaagattcag gtttagagtg gatttcgact 5280 gcccacagta tgaacaggac acagaactgt ttgctcttga tattggggtt gcttacagat 5340 gtgtcaattc tgctagattc cttgaaacaa aaactggtga ttcagggtgg gcttcgcaag 5400 ctatcagcgg ttgtgaagca ctcaaattta atgaagagat caaaatggcc atcttggatc 5460 acaaatcccc gctgtttctg gaggagggtg caccaaatgt gcacattgaa aaaagactat 5520 ttagaggtga caaagttaga aggtcacgtt ctatttctgc aaaaaggggg ccaaactcaa 5580 aactacagga aaagagagga tttaggtccc tctcagcaag aattgaaaga ttcggaaagg 5640 atgagtttgg aagacgtact tcaacaagcg aggcgccacc gggtaggagt atatctgtgg 5700 aagacccata tagacccggg aaaggaaatt ctgacggttc ctccccctga agggttcaag 5760 gaaggtgaaa gctttgaagg cagagagctt taccttcttc tctgcaatca ctactgtaaa 5820 tatttatttg gaaatatagc tgtttttggg tcatctgata agacccagtt tcccgctgtc 5880 ggatttgata cccctccggt tcattacaat ttgacatcgt ccccaaaaga aaaggaaact 5940 gaagagcaaa agaaggccag ggaagggacg tctggtgaaa aaactaaaat ttggagaatt 6000 gacttgtcaa atatagtacc tgaattgaaa acctttgctg ctacttctaa gcaaaattct 6060 ttgaacgaat gtacgttcag aaagctttgc gagccttttg ctgatttggc tcgtgaattt 6120 cttcatgaaa ggtggtccaa aggattggcc acaaatattt ataagaaatg gcccaaagct 6180 ttcgaaaaga gcccttgggt ggcgtttgat tttgccaccg gtcttaaaat gaatcgtcta 6240 acacctgatg agaaacaggt gattgataga atgacaaaaa ggctttttcg tactgaagga 6300 caaaaagggg ttttcgaggc aggttcggag agtaacctgg aactggaggg ttaggagtcg 6360 tgtgaaattc cgcaaagttg gtcgcggtct tgcaggttga catgcctgcc tttatactta 6420 aataaagggt tcaccctgtt ttctgagcat ttcagggttt atgtggtttt tctagtatct 6480 ggagtttatc cattt 6495 //