ID EU547739; SV 1; linear; genomic RNA; STD; VRL; 5018 BP. XX AC EU547739; XX DT 30-DEC-2009 (Rel. 103, Created) DT 06-APR-2011 (Rel. 108, Last updated, Version 2) XX DE Diplodia scrobiculata RNA virus 1, complete genome. XX KW . XX OS Diplodia scrobiculata RNA virus 1 OC Viruses; Riboviria; dsRNA viruses. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-5018 RX DOI; 10.1007/s00705-011-0978-z. RX PUBMED; 21442227. RA De Wet J., Bihon W., Preisig O., Wingfield B.D., Wingfield M.J.; RT "Characterization of a novel dsRNA element in the pine endophytic fungus RT Diplodia scrobiculata"; RL Arch. Virol. 156(7):1199-1208(2011). XX RN [2] RP 1-5018 RA De Wet J., Preisig O., Wingfield B.D., Wingfield M.J.; RT ; RL Submitted (06-MAR-2008) to the INSDC. RL Microbiology, Forestry and Agricultural Biotechnology Institute, RL Lunnonstreet, Pretoria, Gauteng 0002, South Africa XX DR MD5; 8427619fbc22f5919f6b67696a42d702. DR EuropePMC; PMC4357927; 25595766. XX FH Key Location/Qualifiers FH FT source 1..5018 FT /organism="Diplodia scrobiculata RNA virus 1" FT /host="Diplodia scrobiculata" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:459770" FT 5'UTR 1..29 FT CDS 30..1280 FT /codon_start=1 FT /product="hypothetical protein" FT /note="assumed to play a role in transport and protection" FT /db_xref="InterPro:IPR001452" FT /db_xref="InterPro:IPR003903" FT /db_xref="InterPro:IPR036028" FT /db_xref="UniProtKB/TrEMBL:D2CPV6" FT /protein_id="ACD91657.1" FT /translation="MGEWTEMFASNPDLGIMEQAYMRLKTQSACDQLWFVGSTDQRVVD FT PNLRPPSKPQKTQITDSDRQKEEEELQMALALSVKESGTEPSAARSNQPQAKAPQQSAP FT EQEQHQAIASGTTAATVSRVRALYDFTPSEPGELAFRKGDIIAVLESVYKDWWKGSLRG FT QTGIFPLNYVEKLQDPTKEELEREAQMEAEVFAEIKNVEKLLALLSTSSSADARDNEEI FT TSLYHKTVSIRPKLIELIGKYSQKKGKWNLLREFVCWPLIVFQMISRSSTRSSSRHAAT FT TKPSLKPRCRNQRSPATVVNPMATAPAPRRLRVLRTVAILLKDLLRNSFTRLLQPQTKA FT TDILLRMGLSPSRWLSPHKHLLLHRWLVLDQRMASSPTSRSACLSVEGPHPWPFPRKWR FT PTAQWTPGRLRASKIRK" FT gene 1500..4832 FT /gene="RdRp" FT CDS 1500..4832 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA dependent RNA polymerase" FT /db_xref="GOA:D2CPV7" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:D2CPV7" FT /protein_id="ACD91658.1" FT /translation="MSGRLLAHKGYVLQDFAAIRKFYNLQRPPRDTVEAAAAYLFLEPC FT PAEAWLFLPPDLLWDDTLPFPVSEPRFLRRDSHTTRSSLKLDASLLTKLEAAYPPPSGR FT PGGKILADWRLVFAYLRGAAPTRRRELAMSTLAMLAATDADWGSIAAISLVLLPYFSTL FT GGVYAAEAMLAILPDVLPPLVEYAKLCKALHQGLRLTYTFPRPDGCYARLSQEEVRQLT FT GLDVLPGRNEVFAVSHVGGMFMRASYGSLPTTLLRSADGTPHYDRPSFDQEMRECIAEA FT LQSILPNKLQPNTFSQWYARREFWAASGGAPGAKMSWLRQDSESPDAKIEVERVRLNKR FT AALLLVPEKYHRRHFADPSSAVLYSKAAPKFENGKRRIIWNTSLTHYVAQGFLLDLVEP FT RFRQGTWYSAANSAPHRTARSIARFNELHGAIGFMWDYADFNINHSRDAQIMLFSVLAD FT LISERLPRDDPATAECRADVVRITSWVNTAKKNFFMHDSETGYVQEAVRSLASGERATS FT FVNTVLSRAYRLQHDRASRRFFGRQLLLPRSDHQGDDVFATVASMPDATLAGCMFLLTG FT YAGQLFKITCNHTPSGEFLRQFYGMHGIAGYPIRSAMGLFSGEYFEDLPPDPPSRVSAT FT FMQFSKVAARGGAFEPHLITLLSQRNASLAYSDKNGSVHHVTCPPALSITPRSLGGLGG FT VTTRRYQLKGNVIRDAAATDWTWVPRSQLASPTGQTKRRALAIPSGEGKTTLARMYPSF FT FVDHDALLSVWDIPPSPRRAARTAYCKRQSLLCPVDKVLLTWGPTTVDSSFEFLGSIML FT QTPTGTRANAENRRYLASVSQGKRVTVRSQTQLPHAALALASQRVSTVAFESDIPPPVV FT QMPELPVAPMVAKAGLVDTQTLATLQAHRLQEVATQAVASSSFGGAFPRASLSASFARY FT ARDLDAFVKAVKPRARTLEPAASSPQLAYQRARPIWDAILQPNSDPSVPYDHPLPLPAT FT VYGDYIRIMLDAGFSLGEVFLAAVDDQSPVCYHGLAGRIFALMQRRRLDVKAYRATAWL FT FSAITPATPPEQSDLLARYILGRVDLPPVASDRPGTDLNSTVRLISLRHLDNWGRELMP FT LLF" FT 3'UTR 4832..5018 XX SQ Sequence 5018 BP; 999 A; 1644 C; 1299 G; 1076 T; 0 other; ggcagatcaa ggcaaagatc ctcgagcgta tgggtgaatg gacggagatg ttcgccagta 60 accctgatct tggcatcatg gagcaggcct atatgaggct taagacacaa agtgcgtgtg 120 atcaactctg gttcgttggg agcactgacc aacgtgttgt agaccctaac ctgcgacctc 180 cgtcgaaacc tcagaagacc cagatcacgg actcggaccg ccagaaggaa gaggaggagc 240 tacagatggc gctggcactc tccgtcaagg aaagcgggac cgagccatcc gccgccaggt 300 ccaaccagcc gcaagcaaaa gccccacaac aatccgcccc ggaacaagag cagcatcaag 360 ctattgcatc tggaaccaca gcagctaccg tctcccgcgt tcgcgccctt tacgacttca 420 cgccctcgga acccggcgag ttggctttcc gcaaaggcga cattattgcg gttctcgagt 480 ctgtgtacaa ggactggtgg aagggttctc tgcgtggaca gaccggcatc ttccccctca 540 actatgtcga gaagctgcag gatcctacca aggaggagct cgagagagaa gctcagatgg 600 aggcggaagt ctttgcggag atcaagaacg tggagaagct gctagctctg ctgagcacta 660 gttcgagtgc cgacgctagg gacaatgagg agatcacttc gctgtaccac aagacagtgt 720 cgatacggcc gaagttgatc gagctcattg gcaagtattc gcaaaagaag ggtaagtgga 780 atcttttacg cgaatttgtg tgttggccac tgatcgtgtt ccagatgatt tcacgcagct 840 caacgagaag ttcatcaagg cacgccgcga ctacgaaacc ctccttgaag cctcgatgtc 900 gcaaccagcg cagcccggct acggtcgtca accctatggc tacggcgccg gcgccccgcc 960 gcctcagagt gctccgtacg gtggctatcc tcctcaagga cctcctcagg aacagtttta 1020 ctcgcctact ccagccgcag accaaggcta cggatatcct cctcagaatg ggcctcagcc 1080 cttcacgatg gctcagccct cacaagcacc tccttctgca caggtggcta gtcctagacc 1140 agcgaatggc gagctctcct acgtcccgca gcgcgtgcct gtcggtggaa ggcccacatc 1200 catggccttt ccccaggaaa tggcggccaa cagcccagtg gactccaggc cgcctccgag 1260 cgtcgaaaat acggaagtag gactagcgac ttgtccgcac taccccccga ccgtgccgat 1320 gccctgggcc aatctgacat agcgcagata gccaggaaca ttatccgtgc acagccggaa 1380 aactagtctg gaacgccgct ctcgcgcact cctcaggcga gcgttccaag aaactctccg 1440 cccttccacg gctatctcca gccgccttga atatgctcaa gagaggtcac ggacttaaaa 1500 tgagcgggcg tctcctagcg cacaagggtt acgttctcca ggacttcgca gcgattcgga 1560 agttttataa cctccaacgc cccccacggg acaccgtgga ggcggctgct gcctatctgt 1620 tcctggaacc ttgtccagcg gaagcatggc ttttcctgcc tccagacctg ctatgggacg 1680 acaccctgcc ctttcccgtt tctgaaccac gattcctgcg ccgcgattcc catactaccc 1740 gttcttctct aaaattagat gcttcgctcc tcacgaaact cgaagctgct tacccaccac 1800 ccagtgggcg gccaggtgga aagatcctcg ctgattggcg tcttgtgttc gcctatcttc 1860 gaggtgccgc accaacgcgc cgccgcgagc tagccatgtc tacactagcc atgctcgctg 1920 caactgacgc cgactggggg agtattgcgg ccatctcgct agtcctactt ccgtattttt 1980 cgacgctcgg aggcgtgtat gccgccgaag ccatgttggc tattttgccg gatgtcctcc 2040 cccccctcgt tgagtatgcc aagttgtgta aagcactcca tcagggtttg cgcctgacct 2100 acactttccc gcgccccgac ggatgttacg ctcggctgtc gcaggaggag gtccgccaat 2160 tgactggctt ggatgtgctc cccggtagga acgaggtctt cgctgtttca catgtcggtg 2220 gcatgttcat gcgtgcgtca tacggttcac tgccgacgac cctcctacgc tcagcagacg 2280 gcacgccgca ctacgatcgc ccttctttcg accaggagat gcgcgagtgt atcgctgaag 2340 cgctccaatc catactccca aataagctcc agccaaacac cttctcacag tggtacgccc 2400 gtcgggaatt ctgggctgct tccgggggcg cgcctggcgc taagatgtca tggctgcgcc 2460 aagattcaga gtctcctgat gcaaaaatcg aggtagagcg cgtcaggctc aacaaacgcg 2520 ccgcgctcct cctcgtccca gaaaagtatc accggcgtca cttcgccgac ccgtccagcg 2580 cagtgctcta ttccaaagct gcccctaagt ttgagaatgg caagcgccgt atcatctgga 2640 acacgtcctt gacccactac gtcgcccagg gtttcctgct agacctcgtt gaacctcgtt 2700 tccgccaggg tacctggtac agcgccgcca attccgcgcc gcatcgtacg gcgcgaagta 2760 tcgctcgctt caacgagctc cacggcgcta tcgggttcat gtgggactac gctgacttca 2820 acattaacca ttcgcgcgac gcgcagatca tgttgttctc cgtgctcgcg gacctcataa 2880 gtgaacgcct acctcgcgac gacccggcta ctgccgagtg ccgtgccgat gtcgtccgta 2940 tcacctcgtg ggtcaataca gccaagaaaa acttctttat gcatgatagc gaaactggtt 3000 acgtccaaga agccgtccgc tcactcgcct ccggggagcg cgcgacgtct tttgttaata 3060 cggtactcag ccgtgcctat cgcctccagc acgaccgtgc ctctcggcgc ttctttggtc 3120 gccaactctt gttaccgcgt tccgaccatc aaggcgacga cgttttcgcg actgtggcca 3180 gcatgcccga cgccactctg gccggctgca tgttcctcct gaccggttat gcaggccagc 3240 tcttcaagat cacgtgtaac cacaccccct cgggtgagtt cctccgccag ttctacggta 3300 tgcatggtat cgctggttac ccgatccgct cggctatggg tctgttttcg ggcgaatact 3360 ttgaagacct gccccctgac ccgccgagtc gcgtatctgc cacgttcatg cagttctcga 3420 aagttgctgc ccgcggaggt gcctttgagc cccatctgat aaccctcctt tctcagcgca 3480 acgcgtcgct ggcgtattca gataagaacg gaagcgttca ccacgtcaca tgcccccccg 3540 ctttatccat cacgccgaga tctttgggcg ggttaggcgg cgtcaccacg cggcgctacc 3600 agctaaaggg taacgtcata cgcgacgccg ctgcgactga ttggacctgg gtgccgcgca 3660 gccagctcgc ctctcccact ggtcaaacta aacgccgtgc cctggcgata ccttccggtg 3720 agggcaagac gacgctagcg cgcatgtacc cctcgttctt cgtcgaccat gacgccttac 3780 tctcagtatg ggatatccct ccctctccga ggcgtgctgc ccgcactgcc tactgtaagc 3840 gtcagtctct gctctgtccg gtcgataaag tcttgttgac ctggggccct actaccgttg 3900 actctagctt cgagttttta ggctctatca tgctgcagac gcccacggga accagggcta 3960 acgccgaaaa ccgccgctac ttagcgtccg tctcccaggg caagcgtgtt accgtacgct 4020 cgcagacaca actcccgcac gctgctctgg ccctcgcctc gcagcgagta tcgaccgtcg 4080 cgtttgagtc tgacatccct cccccagttg tccagatgcc tgagctcccc gtcgccccga 4140 tggtcgcgaa ggctggtcta gtcgacacgc agacgctggc cactctgcag gcccatcgtt 4200 tgcaggaggt cgctacacag gccgtagcct ctagctcgtt cggcggcgcc tttccgcgtg 4260 cgagcctttc ggcgagtttc gcgcgttatg ctcgggatct ggacgcgttt gttaaagctg 4320 ttaagccccg agcgcgtacg ctggagcccg ccgcgtcgtc gccccagctg gcctaccaac 4380 gcgctcggcc gatatgggac gcaatcctac agccgaattc agatccctcc gtcccgtacg 4440 accatccact gccgttgcca gccacggttt acggcgacta catccgcatt atgttagacg 4500 ccggcttctc cctaggtgaa gttttcctcg cagcggtcga tgaccagtca ccggtctgct 4560 accatggttt ggctgggcgt atcttcgccc tcatgcagcg cagacgccta gacgtcaaag 4620 cgtatcgggc aactgcttgg ctattctcgg ccatcacccc agccacgcca ccagagcaat 4680 ccgaccttct cgccaggtat atcctaggtc gtgttgacct accccccgtg gcttccgaca 4740 ggcccggcac cgacctaaac agcacggtgc gcctcatctc tctcaggcat ctggacaact 4800 gggggaggga gcttatgccg cttttgtttt agggtcgatc taaacgaaat tcaaatacat 4860 aacacctcca cgagtagtag ccctactcct cttatccctg cagcatccct tctagttaac 4920 tcgaggttta ccgcatgagc attgcagccg ctaccctgtt ctccatcgcc gccctccacg 4980 ctccggtcac cccccagttg tccagatgcc tgagcctg 5018 //