ID EU545828; SV 1; linear; genomic RNA; STD; VRL; 3578 BP. XX AC EU545828; XX DT 27-JUN-2008 (Rel. 96, Created) DT 27-JUN-2008 (Rel. 96, Last updated, Version 1) XX DE Beet black scorch virus isolate Val25 polymerase, 23K protein, 7K transport DE protein 7A, 7K transport protein 7B, 5K transport protein 5A, coat protein, DE and 5K hypothetical protein 5B genes, complete cds. XX KW . XX OS Beet black scorch virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Betanecrovirus. XX RN [1] RP 1-3578 RX DOI; 10.1007/s00705-008-0121-y. RX PUBMED; 18548319. RA Koenig R., Valizadeh J.; RT "Molecular and serological characterization of an Iranian isolate of Beet RT black scorch virus"; RL Arch. Virol. 153(7):1397-1400(2008). XX RN [2] RP 1-3578 RA Koenig R., Valizadeh J.; RT ; RL Submitted (05-MAR-2008) to the INSDC. RL Institut fuer Epidemiologie und Pathogendiagnostik, Julius Kuhn Institute, RL Messeweg 11, Braunschweig D38104, Germany XX DR MD5; 40fd9778ef99acee5c50690df1066eaa. XX FH Key Location/Qualifiers FH FT source 1..3578 FT /organism="Beet black scorch virus" FT /isolate="Val25" FT /mol_type="genomic RNA" FT /country="Iran" FT /db_xref="taxon:196375" FT CDS 10..2184 FT /codon_start=1 FT /transl_except=(pos:619..621,aa:OTHER) FT /product="polymerase" FT /db_xref="GOA:B3U3L6" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:B3U3L6" FT /protein_id="ACD67874.1" FT /translation="MDSIPYVILRILDFVFHSIFFPSLLFIIKHNTTILWACLCAYGFY FT RAFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGKXGGLLCTSGFTTPTWRGNP FT EGLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDGLAPT FT PKPTPGVYAKLSRFHDLVSANLTSTTRLTYEQFLGFYSGRKLERYQQAVESLAIRPIGV FT QDAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDAINRVYGG FT RTVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHKIWLSMYHGS FT DRKTLAKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCATVHNYCSR FT LGVKRFRLANNGDDCMLVVEAKDEARVRQGLIEYYRELGFTMKVEPTVYELEHLEFCQT FT RPVLVDGAYRMVRNLHQGMSKDLHSLHDLGSRKAAEAWVSAVGSGGRVMNDGVPVLKSF FT FMQFPLSAAPKSKSDMSIALQEDWKYKFNRTGCFRNLAPTPQSRYSFWRAFGVLPDEQI FT VLENGFSRLSFDKLDQDIQEEVSLLQFSGA" FT CDS 10..621 FT /codon_start=1 FT /product="23K protein" FT /db_xref="GOA:B3U3L7" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:B3U3L7" FT /protein_id="ACD67875.1" FT /translation="MDSIPYVILRILDFVFHSIFFPSLLFIIKHNTTILWACLCAYGFY FT RAFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGK" FT CDS 2202..2393 FT /codon_start=1 FT /product="7K transport protein 7A" FT /db_xref="InterPro:IPR035284" FT /db_xref="UniProtKB/TrEMBL:B3U3L8" FT /protein_id="ACD67876.1" FT /translation="MEQQRSEQRRERRVRSRSEGRKSMSDVGQSAINREADVKKDMGPS FT VSMTVVGENVEFTQHFHF" FT CDS 2395..2592 FT /codon_start=1 FT /product="7K transport protein 7B" FT /db_xref="GOA:B3U3L9" FT /db_xref="UniProtKB/TrEMBL:B3U3L9" FT /protein_id="ACD67877.1" FT /translation="MGTIYVVREEPSGFLVWAFVVAIVCIIGLLSYTPPERLNHSYHEN FT NQKTQYITIGGASTSKVSTN" FT CDS 2408..2551 FT /codon_start=1 FT /product="5K transport protein 5A" FT /db_xref="UniProtKB/TrEMBL:B3U3M0" FT /protein_id="ACD67878.1" FT /translation="MLFAKNPQGSSCGHSLLQLCVSLDSYRTPHLKDLTTLITKITRRR FT NT" FT CDS 2621..3319 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:B3U3M1" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B3U3M1" FT /protein_id="ACD67879.1" FT /translation="MAPKRNKGGRKTRVSDETVRAPAAGGVIQRTPGIPPRIRSTTIGT FT RVSNTELLAGVNVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLSIKLIYIPIVPT FT TTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFDGATVQLLGDRPTTGAVCI FT DVDVNRFGFTWYRYATLAAITALTANDRNLYIPSVCNVATSGGSAATNVGNLMIKYSIE FT LIEPIPAAIN" FT CDS 3384..3521 FT /codon_start=1 FT /product="5K hypothetical protein 5B" FT /db_xref="UniProtKB/TrEMBL:B3U3M2" FT /protein_id="ACD67880.1" FT /translation="MEDCLHDAGMLSHTVRYRCWILANRLDRFGWFQTDVSLEIFIVLS FT " XX SQ Sequence 3578 BP; 896 A; 846 C; 922 G; 914 T; 0 other; tcagcgatca tggattctat cccgtatgtg atcctgcgca tacttgattt tgtctttcac 60 tccatcttct ttccatccct tctctttatc atcaaacaca acaccaccat cctatgggct 120 tgtctctgtg cctatgggtt ctaccgtgct ttccgccttg ttttcaagat caaggttgag 180 gtacacccag ccacccgtgc tgtctttaag gacatggtca cccgtttcca gcgggagagt 240 atgttctcac ccgacgatga agtgcctgag ggcatcccta tccacgagga cgtagacctt 300 gttagcgacc ccacacacaa agatattaag agggtccgag ctagcaggcg agtctcatac 360 gctgtgaggg ttgctcatgt agccaagtca aaggtgggac tacttgcaaa caccaaagca 420 aatgagctgg tgtattctcg gctgtgtcga gatgagatgg tcacccacgg tgtgcgccca 480 tcacacattg cgcatgcagt gccgctcgct gtcgcggcct gttttatccc attggacagt 540 gatttcttgg cagcatcaat tagaaactgc caggagatgg aagagcggag ggccgttttg 600 gggccctcat atggaaaata gggaggccta ctctgcacca gcgggtttac cacaccaact 660 tggcgtggta atccagaggg tttgctggtg aagagaggac cacctctggc caaacccaga 720 aaactgtacc gtttttctgg atttgggact catatacggt acggagtaca cgatcactcc 780 ttgggcaatg ttcggagggg acttgtcgag cggctattta tggtagagac caaagatggc 840 cttgctccga caccaaagcc cacccctggc gtgtatgcca agttatcccg gttccatgac 900 cttgttagtg ccaatctaac ctcgaccacc agattaacat acgagcaatt cctcggcttt 960 tattctggtc gcaaattgga gaggtaccaa caggctgtgg agtcgttagc aatccgccct 1020 ataggggtcc aggatgcttg gcttagcacg ttcgttaagg ctgaaaaact caacatctca 1080 gctaaacccg acccggcacc tagggtcatt cagcctaggt cgccgcggta caatgtggag 1140 gttggacggt tcctcagaca tgctgaggaa catctgttcg atgccattaa tcgtgtgtat 1200 ggtggacgga cagtattcaa ggggttgaat gctgatcagg ctggcatgga gatgcaagcc 1260 atgtggcaag aatttgacaa tcctgtcggt attggcatgg acgcctctcg gtttgatcaa 1320 cacgtttcca aggaggcgtt ggagttcgaa cacaagatat ggttgtccat gtaccatggc 1380 tctgacagga aaacattggc aaagctgttg gggatgcaaa tccacaatcg cggtcttgct 1440 agatgtcctg atggggaaat caggtacacg gttgaagggt gtcgtatgtc tggagatatt 1500 aacacctctt ccggcaactg ctatataatg tgcgcaactg tgcacaatta ttgcagccgg 1560 ttgggtgtta agaggttcag gcttgccaac aatggtgatg attgcatgct agtcgtggaa 1620 gctaaggatg aagcgcgtgt gaggcaaggg cttattgaat actataggga gttgggattc 1680 acaatgaaag tggaacccac tgtctatgaa cttgagcatc ttgagttttg tcaaacccgc 1740 ccagtcctgg ttgatggggc ttacagaatg gtgcgcaatc tacaccaggg catgtcgaag 1800 gacctacact ctttgcatga tcttggaagt aggaaagctg ccgaggcatg ggtctcagca 1860 gttggcagtg ggggacgagt gatgaatgac ggggtgcctg tactcaagtc gttcttcatg 1920 cagtttcccc tttctgctgc tcctaaatcc aagtctgata tgagtatagc gttgcaggaa 1980 gattggaaat acaaattcaa tcggactggg tgtttcagaa atttagcacc cactccacaa 2040 tcccgctact cattttggcg tgcatttgga gtgttgccag atgaacagat tgtcctggaa 2100 aacggatttt ctcgtctgag ttttgacaaa ctagaccagg atatccagga ggaggtcagc 2160 ctcctccagt tttctggggc atgaaaacct aaccactttt catggaacaa cagcgtagtg 2220 aacagcgtcg tgagcgtagg gtgagaagta gatcggaggg caggaagtct atgtctgatg 2280 tgggacagtc tgcaatcaat agggaagcag acgtcaagaa agacatgggt ccatcggtct 2340 ctatgacggt ggtgggggag aacgtggagt tcacacaaca tttccacttc tgaaatgggc 2400 acaatctatg ttgttcgcga agaaccctca gggttcctcg tgtgggcatt cgttgttgca 2460 attgtgtgta tcattggact cttatcgtac accccacctg aaagacttaa ccactcttat 2520 cacgaaaata accagaagac gcaatacata actattggag gagcatccac tagtaaggtt 2580 tccacgaact gaatttactg ctttctagaa tagacaataa atggcaccta aacgcaacaa 2640 aggaggcagg aagacccgcg tgtccgatga gacggtgcga gctcctgctg ctggtggtgt 2700 gatacaacgc acaccaggta tccctccacg tattaggtcc accactattg gtacgcgagt 2760 atccaacaca gaattacttg ctggtgttaa tgttgcagca gcaggtgcat tttctgtcgt 2820 tggagccggc cttttcccca gcaacctcgg ttggctcaac gggattgctt ccaactacag 2880 caagtttaga tggctttcca taaagctcat ctatattccc attgtcccta caaccactgc 2940 tggtgctatg accatggctt tatcatacga cccggctgat gctacaccta ccagcttcca 3000 acaagtgcaa caaatgtata acagcataac tgcacctgta tgggctggat ttgatggagc 3060 tactgttcag ctattagggg atcgcccaac aactggtgcc gtgtgtatcg atgttgatgt 3120 caatcgattt ggattcacat ggtacaggta cgcaacctta gccgctatta cagcactcac 3180 tgcaaacgac aggaatctgt acattcctag cgtttgtaat gtggctactt ctggcgggtc 3240 agctgcgact aatgttggca acttaatgat aaagtacagc attgagctca ttgagcccat 3300 acccgctgcc atcaattaga tcccacatcc tggtgtggtt aatccagtga aaaatattag 3360 gaaatccatg gaattcacac cccatggagg attgcttgca tgatgcaggt atgctcagtc 3420 acactgtgag gtatcgatgc tggatcctgg caaacaggct tgacaggttt gggtggttcc 3480 aaaccgatgt atcactcgag atattcatag tactaagcta gaaaacatca tgcgtgcgca 3540 cacggccggc tacgtcctat cgtagccggg ggctccgg 3578 //