ID EU495234; SV 1; linear; mRNA; STD; VRL; 2951 BP. XX AC EU495234; XX DT 21-APR-2008 (Rel. 95, Created) DT 17-JUL-2008 (Rel. 96, Last updated, Version 2) XX DE Ecuadorian rocoto virus isolate Rocoto polyprotein mRNA, partial cds. XX KW . XX OS Ecuadorian rocoto virus OC Viruses; Riboviria; Potyviridae; Potyvirus; unclassified Potyvirus. XX RN [1] RP 1-2951 RX DOI; 10.1007/s00705-008-0132-8. RX PUBMED; 18553171. RA Janzac B., Fabre M.-F., Palloix A., Moury B.; RT "Characterization of a new potyvirus infecting pepper crops in Ecuador"; RL Arch. Virol. 153(8):1543-1548(2008). XX RN [2] RP 1-2951 RA Janzac B., Moury B.; RT ; RL Submitted (18-FEB-2008) to the INSDC. RL Plant Pathology, INRA, Domaine St Maurice, Montfavet F-84143, France XX DR MD5; b4183e1b3a0efa563881d781f290714a. XX FH Key Location/Qualifiers FH FT source 1..2951 FT /organism="Ecuadorian rocoto virus" FT /host="Capsicum annuum" FT /isolate="Rocoto" FT /mol_type="mRNA" FT /country="Ecuador" FT /collection_date="2006" FT /db_xref="taxon:519498" FT CDS <1..2496 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:B2LAW1" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:B2LAW1" FT /protein_id="ACC60229.1" FT /translation="PDNVLWGSLKLTKSTPSGMFKTTKIIEDLHAYKDDEVREQGQNTG FT WMLSALKENLQAVAFMKSQLVTKHVVKGECLLFKQYLELDEQAKSFFQPKMWAYGKSLL FT NKEAYIKDLMKYSKPIEVGVVDCDAFEEATCRVIIYMRQKGFRKCTFVTDEEEIFKALN FT MNAAVGAMYGGKKKDYFAEYTSHDKEQILKESCRRLYLGELGVWNGSLKAELRSKEKIE FT ANKTRTFTAAPIDTLLAGKVCVDDLNNQFYSKNIDCCWTVGMTKFYGGWNKPFTALPDD FT WVYCDADGSQFDSSLTPYLINAVLAVRYAFMEEWDIGFQILQNLYTEIVYTPISTPDGT FT IVKKFRGNNSGQPSTVVDNSLMVVLAMHYSFVEAGVLHEEFESVCKFFVNGDDLIIAVA FT PHFEHFLDNLGKYFSDLGLNYDFSSRTTDKSQLRFMSHRGLLVDGIYIPKLEEERIVSI FT LQWDRAALPEYRLEAICAAMIESWGYPQLTFEIRRSYQWLLQQEPYNQLASEGKAPYIA FT ELALRKLYLNVDSSAEELDAYMKFFSELDDEIECDSFEVSHQSKEESSTLDAGKDPVKD FT RTAKSSATASGTSSGKVVEKDVNAGTTGTFTVPRIEAISKKMRQPKANGVSALNFDHLL FT LYKPNQIDISNARATQSQFDNWFSEVQKAYDVDTNAMGTILNGLMVWCIENGTSPNVNG FT VWTMMDGDEQVEFPLKPVIENAKPTFRQIMAHFSDVAEAYIEMRNKSEPYMPRYGLVRN FT LRDMSLARYAFDFYEITSRTSVRAREAHIQMKAAALKTAQTRLFGLDGGISTQEENTER FT HTTEDVAPNLHTMLGVRNM" FT mat_peptide <1..120 FT /product="Nia proteinase" FT /note="nuclear inclusion a protein; NiaPro" FT mat_peptide 121..1677 FT /product="Nib replicase" FT /note="nuclear inclusion b protein; Nib; RNA-dependent RNA FT polymerase; RdRp" FT mat_peptide 1678..2493 FT /product="capsid protein" FT /note="coat protein; CP" FT 3'UTR 2497..2951 XX SQ Sequence 2951 BP; 906 A; 509 C; 714 G; 822 T; 0 other; cctgataatg tgttgtgggg ctccttaaag ctgaccaaaa gcactcccag tggtatgttc 60 aagaccacta agataataga ggatcttcat gcttacaagg atgatgaagt gcgtgaacaa 120 ggacaaaaca caggttggat gcttagtgcg cttaaagaaa acttgcaagc agtggcattt 180 atgaagagtc aacttgtcac gaagcatgtt gtcaagggtg aatgtttgct cttcaaacaa 240 tatcttgagt tggatgagca agccaaatct ttctttcaac cgaagatgtg ggcatatggc 300 aaaagcttgt tgaacaaaga agcatacatc aaggacttaa tgaagtattc taaaccaata 360 gaagtgggtg tagttgattg tgatgcattc gaagaagcta catgcagagt tatcatctac 420 atgcgccaga aaggttttag aaagtgcaca tttgtcacag atgaggaaga aattttcaaa 480 gccttgaaca tgaatgcagc agtgggagct atgtatggag ggaagaaaaa ggattacttt 540 gctgaataca catcgcatga caaggaacag atattgaaag agagttgtag gcgtttgtac 600 cttggggagc ttggagtttg gaatggctct cttaaagctg agttgagaag taaagaaaag 660 attgaagcaa acaagacacg cacgttcaca gcagcaccaa ttgatacctt attggctggc 720 aaagtgtgtg ttgatgacct caacaatcaa ttctacagca agaatataga ctgttgctgg 780 acagttggga tgacaaagtt ctatggtggt tggaataaac ctttcactgc cttgccagat 840 gattgggttt attgtgatgc agatggttcg cagtttgata gctctttaac accatacttg 900 atcaatgcag ttttggcagt gcgatatgct tttatggaag aatgggacat tggcttccag 960 atactccaaa atttgtatac tgagattgtg tatacaccaa tctcaactcc agatggaacc 1020 attgttaaga aatttcgagg aaataatagt ggccagcctt caactgttgt cgataattct 1080 ttaatggttg tactcgctat gcactatagt tttgtcgagg ctggagtttt acatgaagag 1140 tttgaatcag tgtgcaagtt ctttgttaat ggagatgact taatcatagc agtggctcca 1200 cattttgagc atttccttga caatctggga aaatattttt cagatttggg tctcaattat 1260 gatttttcat cccgaaccac cgacaaaagt caacttcggt tcatgtctca tcgtggtctc 1320 ctggtagacg gaatttacat ccctaaactt gaagaagagc ggatcgtttc catactccaa 1380 tgggaccgtg cagctttacc agagtataga ttagaggcaa tttgtgctgc aatgattgaa 1440 tcatggggct acccacaact aacttttgaa atcagaagat cctaccagtg gttgctccaa 1500 caagaaccat acaatcagtt ggcttcggag gggaaagcac catatatagc cgagctagcg 1560 cttcgcaagt tgtatttgaa tgtggattca agtgcagagg agctggatgc atatatgaaa 1620 tttttcagtg agctcgatga tgagatagag tgtgactcat tcgaagttag ccaccagtcg 1680 aaggaagaga gtagcacact tgatgctgga aaggatccag taaaagatag aaccgctaag 1740 tcatcagcca ccgctagcgg aacctctagt gggaaagttg ttgaaaagga tgtgaatgca 1800 ggcacaactg gcacttttac agtaccacgc atagaagcaa tctccaagaa gatgcgccaa 1860 ccaaaagcta atggagtgag tgcgttaaat tttgatcatc tattgcttta taagccaaac 1920 cagattgata tctcaaatgc aagagcaact cagagtcaat ttgacaattg gttttctgaa 1980 gttcagaagg catatgatgt ggatacaaat gcaatgggaa caatacttaa tggcttgatg 2040 gtttggtgca ttgaaaatgg aacttcacca aatgtcaatg gagtgtggac catgatggat 2100 ggagatgaac aggtggagtt tcctttgaag ccggttatag aaaatgcaaa gcctactttc 2160 aggcaaataa tggcgcattt ctcagatgtg gctgaagcat atatagaaat gcgaaacaaa 2220 agtgaaccat acatgccacg gtatggtttg gtgaggaatt tgcgagatat gagtttagca 2280 cgatatgctt ttgattttta tgaaatcaca tctcgcacat ccgttcgagc acgagaagct 2340 catattcaaa tgaaagcagc ggcccttaaa actgctcaaa ctcgtttgtt tggactggat 2400 ggtggtatta gtacacagga agaaaacaca gagaggcaca ctacagagga tgtggccccc 2460 aatctgcata ctatgcttgg ggtcaggaat atgtgactga gtgctttgtc tgggatgaaa 2520 tatagctata atatatgcag tttatagttt ggcttttctt cgtaccagct ttaattacat 2580 cgtttactta atatatagtt gattggaaca atctttgcag aggtagcctt ttgactcacc 2640 atcattaggg taaactttgt attgagaatt ccatgtatgt agatatgggg tggctgtggg 2700 acacactcac acaggtaaac tcatagtttc tttcagctgt atggtcatgg ggtggctcag 2760 tgataaagtc attgaggtga actcgcgact gggatcattt ggggtggctc ggtgacacac 2820 tcatcgaggt gaactcattg gtttcattta gtagtacgta acattaaaga ttccctagta 2880 aggcgagagt ggtttgcagt taaagactgt gaagtgatcg tagccggtcg tgggagaaaa 2940 aaaaaaaaaa a 2951 //