ID EU489745; SV 1; circular; genomic DNA; STD; VRL; 7487 BP. XX AC EU489745; XX DT 20-APR-2008 (Rel. 95, Created) DT 30-JUN-2009 (Rel. 101, Last updated, Version 2) XX DE Citrus yellow mosaic virus isolate PM, complete genome. XX KW . XX OS Citrus yellow mosaic virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7487 RX DOI; 10.1007/s11262-009-0367-9. RX PUBMED; 19444599. RA Borah B.K., Johnson A.M., Sai Gopal D.V., Dasgupta I.; RT "Sequencing and computational analysis of complete genome sequences of RT Citrus yellow mosaic badna virus from acid lime and pummelo"; RL Virus Genes 39(1):137-140(2009). XX RN [2] RP 1-7487 RA Borah B.K., Johnson A.M.A., Saigopal D.V.R., Dasgupta I.; RT ; RL Submitted (04-FEB-2008) to the INSDC. RL Plant Molecular Biology, Delhi University South Campus, Benito Juarez Road, RL New Delhi, Delhi 110021, India XX DR MD5; 6438341db0711d66baa2306de1375c3f. XX FH Key Location/Qualifiers FH FT source 1..7487 FT /organism="Citrus yellow mosaic virus" FT /host="pummelo" FT /isolate="PM" FT /mol_type="genomic DNA" FT /country="India" FT /db_xref="taxon:174178" FT CDS 231..662 FT /codon_start=1 FT /product="unknown" FT /note="ORF I" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:B2L8N0" FT /protein_id="ACB87154.1" FT /translation="MSRIWEEAIQRWYETSHTANLEYLDLASKPKVSNSEISHNLAVVY FT DRLSLFSRVSIKNFKSIQETLEKQDLRIQKLESSLKTLTSEFIAHKPLSKAEVKNLVTE FT IAKQPKLVEAQALQLTENLNQKLDRVEALISKVERWVHS" FT CDS 659..1072 FT /codon_start=1 FT /product="unknown" FT /note="ORF II" FT /db_xref="UniProtKB/TrEMBL:B2L8N1" FT /protein_id="ACB87155.1" FT /translation="MTYQATEKTPTYKRALAATEPINSPSLGFVNPEEYSGGITGTKAL FT IKQNNLLIQLVVELSVNVNNLSEQVDQLAKQLGKQPQQGSSTTALPDDLVDKLRSLSLG FT TEKKKEKRGTFYAYKDPYLIYKEEVEKLKKQQQ" FT CDS 1069..7008 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF III" FT /db_xref="GOA:B2L8N2" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:B2L8N2" FT /protein_id="ACB87156.1" FT /translation="MSSSRARTVVEQLPPATTSRVEERDNTPLYDDQIRDYRQWQRRRH FT NMGRRWNQLIGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRSDDRHHQVYIH FT RSEEAILCVDGDQVDRLLIQPESAEQLNRSGMSFINMGIVQVRIQILHRQHEGTTALVV FT FRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNG FT EANLLVTRGIVGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSAADVQGQQWFLR FT PSNIPAVPMAPTNVDTRNMIDGSISLRFNSYQPAPDPAPVAYNQHDEEIPPDEDEEQIR FT NHTIALWRENDEVWDTLGEPSGKFDFYVRYTRPAHALQDPAHIIATGWDDLDDNPTPSS FT PSNNIRTYQTPSPPSSSDENDDMSYLHYLAQQSPVPPPPQDFTNPFSEGGGESTYPYPS FT FQPPFDLQSDDSYGTLATWSEYDAMSQTNSSPALSLSAKTVFDFDRYSHTTNEDDVVQS FT AWISENLFRENTGNGEVHNLVPPGPDTPRGDEVKGTQESMAHTVAVTTEGPKQEAEFDY FT PAFAKLQDHEKCSRPKPKTEKVLSSAISSYTPPSDTAMTPVAYPPAQNIASPSYNPSPQ FT IPMFEGYSPKRPHFKRDNHTFISLPSAQQNTGALFIMPQQIGLFHEVFTSWEAITKAYV FT AQQGITDPRDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILSQMR FT RVFSLEDPATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSE FT KLWLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFC FT SSIPIPGYYGGRSSERRYGIRRTTTYKGKPHNTHARIEKTKHLRNKKCKCYLCGEEGHF FT ARECPNDRRNVKRVAMFEGLDLPDDCEIVSIDEGDPDSDAIFSISEGEETGAFEEQCFV FT FQEECNGTYWLGKRGGYQDLVQIPISKEIYYCQHEWEENQPIDDPAHVRCYPCKRETTQ FT RARLHCKLCHITSCLMCGPTYFNKKITVQPIPQAPFNQKGLLQQQQEYIAWCNNEIARL FT KEEVAFYKQLAQERELQLQLEQSRKELAGADSRRRKDKGVVIDEGSCYFNPEETTRIVA FT HGDTQVTKTRPVKNMLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEEN FT SFVVNFSGINSKQQVKQKIKPGKMFISEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSM FT YGGVRLEGNTITFYKQITSINTRLAAPHLQQEEEGKEEELNLEEHRLIQEMVAYSTERP FT FVHFQQKFAGLIQELKAQGYIGEEPMKYWAKNQVVCHLDIKNPDMVIEDRPLKHVTPQM FT EESFRKHVEALLKIGAIRPSKSRHRTTAIIVNSGTSINPLTGKEVKGKERMVFIYKRLN FT DLTNKDQYSLPGIQTILQRLKGSTIFSKFDLKSGFHQVAMHPDSIEWTAFWVPSGLYEW FT LVMPFGLKNAPAVFQRKMDHCFKGTEAFIAVYIDDILVFSKTEREHEEHLQIMLSICQK FT NGLILSPTKMKIAQAEIEFPGAIIHKGLIKLQPHIVQKLLTFTNKQLEEVKGLRSWLGL FT GLLNYARNYIPHMGRLLSPLYAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPAD FT CFIIIETDGCMDGWGGVCKWKLAQYDSRSSEKVCAYASGKFNPPKSTIDVEIHAVMNSL FT NNFKIYYLDKSSLCLRTDCQAIISFFNKSNVNKPSRVRWIAFTDFLTGLGIPVNIEHID FT GKNNHLADALSRLVTGFVFAEPQCQDKFQDDLGKLEAALLEKKEAPQAMHEEYVSLLTR FT SADRITLSLYSMRDSSPSRIYSCRSGKEPMKALICEQKSCLSKGDLGSMKTVHSRSASN FT QQGNWWPSTSINSITSEAKRQETTHMPINCPHAIGTTNSCVKWSSC" FT CDS 1973..2518 FT /codon_start=1 FT /transl_except=(pos:1973..1975,aa:Met) FT /product="unknown" FT /note="ORF IV" FT /db_xref="GOA:B2L8N3" FT /db_xref="UniProtKB/TrEMBL:B2L8N3" FT /protein_id="ACB87157.1" FT /translation="MDPFLSDSIVINQLRIQHLLPIINMMRKYPLMKMKNRSVIIPLRY FT GVKMMRYGIHWVNLRVNLTFMFAIPDLHMLYKTLPILLLLVGMILMIILLHPVHPTIFV FT LTKPLPLLPLLTRMMICPTFTTLLSNHLSLLLHRILPILFRKVVGSLPTLTPHFSHHLT FT YNQMIHMVLWQLGVSMMP" FT CDS 3953..4246 FT /codon_start=1 FT /product="unknown" FT /note="ORF V" FT /db_xref="UniProtKB/TrEMBL:B2L8N4" FT /protein_id="ACB87158.1" FT /translation="MKEIQTVMLSSASQREKKLEHLKNSVLCSRKNVMGHTGLVREVDT FT RISCKFQFPKKSTIVSTNGRRINPLMIQRMFDVTLAKEKLLKELAYIVSYAT" FT CDS 6582..7046 FT /codon_start=1 FT /product="unknown" FT /note="ORF VI" FT /db_xref="UniProtKB/TrEMBL:B2L8N5" FT /protein_id="ACB87159.1" FT /translation="MSRQVPGRFREVGSSSSGEERSSASNARRICLPVDQISGPHYPLA FT LLYEGLVSQQNLLMQVRQRTNEGLNLRTEVMPIQRRLGEYEDCALQECIQSARQLVALH FT QHKLNYIRGKATRDNAYADKLPTCNRDHEQLCEVVELLEGISERISDTAV" XX SQ Sequence 7487 BP; 2334 A; 1616 C; 1648 G; 1889 T; 0 other; tggtatcaga gcttggttgt gttcttacaa cgatgggagc ttaaaacctt ccattaggtc 60 tgaggaaaga gttaactgta tggtgtgttt agttcctatt tgtattgtta ttcctttgtt 120 catgatatag aaaacgatca tcgagaaaag ggtgaaggca ctatatctgg cagcaagagg 180 agagtaagtc cagtgaaacc cttcgcatga cgctaaaggt gatctaatct atgtctagaa 240 tctgggaaga agcaatacaa agatggtatg agacatccca tacagccaat ctcgagtact 300 tagatctagc ttcaaaacca aaagtttcca attccgaaat ctcacacaac cttgcagtag 360 tttacgatcg tttgagtctt tttagccgtg tttccattaa gaatttcaaa agtatccaag 420 aaaccctaga aaagcaagac cttagaatcc aaaaacttga gtccagtctg aaaaccctaa 480 ctagtgagtt tatagcccat aaacctttat ccaaagctga ggtgaaaaac ttagttacag 540 aaattgccaa acagccaaag cttgttgaag cacaagccct ccagcttaca gaaaacctga 600 accaaaagct cgatcgggta gaagccttga tatctaaggt ggaacgttgg gttcattcat 660 gacctatcag gctactgaga aaaccccaac atacaagcgt gctcttgcgg caaccgagcc 720 tattaacagt ccatcacttg gatttgttaa cccagaggaa tattctggtg gtataactgg 780 tactaaagct ctcattaagc aaaacaattt gcttattcag ctcgtagtag agctttctgt 840 caacgtcaac aatttgtcag aacaagttga tcagctagca aaacaacttg ggaaacaacc 900 tcagcaaggc tcatcaacaa cagccttacc tgacgatctt gttgacaaac tcagaagcct 960 ttctttaggt actgagaaga agaaggaaaa gcgtggtacc ttctacgctt acaaagaccc 1020 ctacttgatc tacaaggaag aagtagaaaa gctaaagaag cagcagcaat gagcagtagc 1080 cgagcaagaa ccgtggtaga acaacttcca cctgcaacta cgtcccgagt ggaggaacga 1140 gataacaccc ccctctatga tgatcaaata cgggattaca ggcagtggca gcggcggcgt 1200 cacaacatgg gaagaagatg gaatcaattg ataggtcgac cctacaatca gaccttggag 1260 caggtagtag atcctgaggt agctttacag ttatctatgc aggaacgtgc aaggctagta 1320 ccagcagagg tactttacag atcaaggagt gatgatcggc accatcaggt ctatatacac 1380 agatcagagg aggctatcct ttgtgttgac ggagatcaag ttgaccggtt actgatacaa 1440 ccggaaagtg ctgaacagct aaacaggagt ggtatgtcct ttatcaatat gggcatagtt 1500 caggttcgga tccagatcct gcacagacag catgagggaa caacagccct tgtggtgttc 1560 agagataatc ggtggcaagg cgatcaatct atattcgcca ccatggaact tgatttgacc 1620 aaaggaatgc aaatggtata cataatccca gatacaatga tgacagtcag agacttctgc 1680 cggaatgttc aaatttccat attaacaaaa ggatatggga attggcagaa cggtgaggca 1740 aatttgcttg tcacaagggg aatcgttgga cggttatcta atacccctaa tgtggccttt 1800 gcctatcaga tccaaaatgt tacagattat ctagtcagtc atgggattca ggcgttgcca 1860 ggacggcgct attcagctgc agatgtacag ggccagcaat ggtttctacg accatccaat 1920 attccagcag ttccaatggc ccctactaac gtggatacac gtaacatgat agacggatcc 1980 atttctctca gattcaatag ttatcaacca gctccggatc cagcacctgt tgcctataat 2040 caacatgatg aggaaatacc ccctgatgaa gatgaagaac agatccgtaa tcataccatt 2100 gcgctatggc gtgaaaatga tgaggtatgg gatacactgg gtgaaccttc gggtaaattt 2160 gacttttatg ttcgctatac ccgacctgca catgctttac aagaccctgc ccatattatt 2220 gctactggtt gggatgatct tgatgataat cctactccat ccagtccatc caacaatatt 2280 cgtacttacc aaaccccttc ccctccttcc tcttctgacg agaatgatga tatgtcctac 2340 cttcactacc ttgctcagca atcacctgtc cctcctcctc cacaggattt taccaatcct 2400 ttttcggaag gtggtgggga gtctacctac ccttacccct catttcagcc accatttgac 2460 ctacaatcag atgattcata tggtactttg gcaacttgga gtgagtatga tgccatgagc 2520 caaactaata gctcacctgc acttagccta agtgcaaaaa ctgtttttga ttttgacagg 2580 tactcccaca caacaaatga agatgacgtg gttcaatcag cctggatttc tgaaaatcta 2640 tttcgtgaaa acaccggaaa cggtgaagtt cacaatcttg ttccgcctgg accggacacc 2700 cctcggggtg atgaggtcaa aggaacccaa gaatccatgg cccatactgt tgcagtaacc 2760 acagaaggac caaagcagga agctgagttt gactatccgg cctttgccaa attacaagac 2820 catgaaaagt gcagcaggcc taagcccaaa actgagaaag tcctgtcttc agcgatttct 2880 tcatatactc caccaagtga tactgcaatg acacctgttg cgtacccccc agcgcagaat 2940 atagctagcc caagctacaa cccaagccca caaataccta tgtttgaagg ttacagccca 3000 aaaagacccc acttcaaaag ggataatcat acttttataa gccttccctc agcccaacaa 3060 aatactgggg ctttatttat catgcctcaa cagataggcc tgtttcatga ggtcttcacc 3120 tcttgggaag caattacaaa agcctatgtt gctcaacagg gtatcacaga ccctagagat 3180 aaggctgact tcattgagaa catgttgggt ccaacagaga aaataatttg gactcaatgg 3240 cgtatgggct acgctgatga atatgagaac cttgtaacaa cagctgacgg acgtgagggt 3300 actcaaaata tactctccca gatgcgaagg gtcttttcat tggaagatcc agcaactggt 3360 tcaactgcag tccaagatga agcttacaga gacttggaga gactcacttg tgattcagtc 3420 aagcatatag tccaatactt gaatgacttt atgcgaattg cagcaaaaac tgggcgcatg 3480 ttcataggcc cagaattgag tgaaaaacta tggctcaaaa tgccaggtga tctaggccaa 3540 aggatgaaga aggcctatga ggaaaaacat ccaggaaaca tcgttggtgt gtgccctcgg 3600 atcttgttcg cttacaagta ccttgaaggc gagtgtaaag atgcagcgtt cagacgctcc 3660 ctgaagaact tatcattttg cagctcaatc cctatcccag gctattatgg tggtagaagt 3720 agtgagaggc gttatggtat aagacgcaca accacttaca aagggaaacc tcataacaca 3780 catgcaagaa ttgaaaagac aaaacatttg cgcaataaaa agtgcaagtg ttatctttgt 3840 ggagaagaag gtcacttcgc acgggaatgt ccaaatgacc ggcgaaatgt gaagcgagtt 3900 gcaatgtttg aaggactaga tctccctgat gactgtgaaa tcgtctctat tgatgaagga 3960 gatccagaca gtgatgctat cttcagcatc tcagagggag aagaaactgg agcatttgaa 4020 gaacagtgtt ttgtgttcca ggaagaatgt aatgggacat actggcttgg taagagaggt 4080 ggataccagg atctcgtgca aattccaatt tccaaagaaa tctactattg tcagcacgaa 4140 tgggaggaga atcaacccat tgatgatcca gcgcatgttc gatgttaccc ttgcaaaaga 4200 gaaactactc aaagagctcg cttacattgt aagctatgcc acataacatc ctgtcttatg 4260 tgtggcccca cctatttcaa caaaaagatc actgtccagc caatacctca agcacccttc 4320 aaccaaaagg gattgttaca acagcaacag gaatacatcg cctggtgcaa taatgaaatt 4380 gccagattaa aggaagaagt tgctttttac aagcagcttg cccaggagag agagttgcaa 4440 ttacagttag aacagtctag aaaggagtta gcaggagcag actctcgcag gcgaaaagac 4500 aaaggggtag taattgatga agggtcatgc tacttcaatc cagaggaaac aaccagaata 4560 gttgctcatg gagatacaca ggttaccaaa actagacctg tgaaaaatat gttatataac 4620 atggatgtgc gaatggagat tccaggcatc ccagctttta cagtaaaggc gattcttgac 4680 acaggagcaa caacctgctg cattgacagc agaagtgtgc caaaagatgc ccttgaagag 4740 aattcgtttg tggtaaattt ctcaggcatc aactcaaaac agcaagttaa gcagaagatt 4800 aagccgggaa aaatgttcat cagtgagcat tacttccgaa ttccatattg ctacagcttc 4860 gagatgcaaa ttggtgatgg catccaactc attcttgggt gcaactttat acggagcatg 4920 tatggtggtg tacgactaga aggtaatacc ataaccttct acaagcagat cacaagtatc 4980 aacaccagac ttgctgcacc tcacctccag caggaagaag aagggaaaga agaggagctt 5040 aacctggaag aacacaggtt aattcaggaa atggttgcat actctactga gcggccattt 5100 gttcatttcc aacaaaaatt tgcagggctt attcaggagt tgaaagccca gggttacatt 5160 ggggaagagc ctatgaaata ttgggccaaa aatcaagttg tttgccatct ggacatcaaa 5220 aatccagata tggtaattga agatcgccca ctgaagcatg tgacacctca aatggaagaa 5280 agctttcgca agcatgtgga agcactgtta aaaattggtg cgatccgacc cagtaaaagt 5340 cgacacagga caacagccat tatagtcaac tctggaacca gtattaatcc tctcacaggc 5400 aaagaagtca aaggcaaaga gaggatggtc tttatctata aaaggttaaa tgacctcaca 5460 aacaaagatc aatacagcct tccgggcatc caaacgatcc tgcaaaggtt aaaggggagt 5520 actatattct ccaaatttga ccttaaaagt ggctttcacc aggtagcaat gcatccagat 5580 tcaattgaat ggacagcttt ttgggtgcct agcggtctct atgaatggtt agtcatgcca 5640 ttcgggttaa agaatgctcc agcagttttt cagagaaaaa tggatcactg cttcaaaggg 5700 acagaggcct ttatcgctgt ttatattgat gacatcctgg tgttctcaaa gactgaaagg 5760 gaacatgaag agcatttaca gattatgctc tcgatctgcc aaaagaatgg gcttatcttg 5820 agcccaacaa agatgaaaat tgcccaagct gaaattgaat tccccggggc aatcattcac 5880 aaagggctta ttaaattaca gccccatatt gtccaaaagt tgctaacttt caccaacaag 5940 caactcgagg aagtgaaagg gctcagatca tggttggggt tgggcctact aaactatgca 6000 aggaattaca ttcctcacat gggccgttta ctcagcccat tgtatgccaa agtcagccca 6060 actggtgaac ggagaatgaa taggcaagat tgggccttga tcgacaaaat aagagcccaa 6120 gtccagaacc ttccagccct ggaattacca cctgcggact gtttcatcat catcgaaaca 6180 gatggatgca tggatggttg gggaggtgtc tgcaaatgga agttagcaca atatgactct 6240 aggagttcag aaaaggtttg tgcttatgca agtgggaagt tcaacccacc aaagtcaaca 6300 atcgatgtgg agatacatgc agtgatgaac agcctcaaca atttcaaaat ctattaccta 6360 gacaaatcca gcttatgttt aaggactgac tgtcaagcta ttattagctt ctttaataag 6420 tccaatgtta acaaaccatc tagggttaga tggattgctt tcacagattt ccttactggt 6480 ctaggaatcc ctgtaaatat agagcacata gatgggaaga ataaccatct ggctgatgct 6540 ctgtccagat tagtaactgg ttttgttttt gcagaaccac aatgtcaaga caagttccag 6600 gacgatttag ggaagttgga agcagctctt ctggagaaga aagaagctcc gcaagcaatg 6660 cacgaagaat atgtctccct gttgaccaga tcagcggacc gcattaccct ctcgctctac 6720 tctatgaggg actcgtctcc cagcagaatc tactcatgca ggtcaggcaa agaaccaatg 6780 aaggccttaa tttgcgaaca gaagtcatgc ctatccaaag gcgacttggg gagtatgaag 6840 actgtgcact ccaggagtgc atccaatcag caaggcaact ggtggccctc caccagcata 6900 aactcaatta catcagaggc aaagcgacaa gagacaacgc atatgccgat aaactgccca 6960 catgcaatag ggaccacgaa cagctgtgtg aagtggtcga gctgttagag ggaatctcag 7020 aaaggatcag tgatacagct gtctaggata gctggcttca attatggagc atgatggacc 7080 ccccgcaata atccaaagtg tggagtgctt tattgtaata atttatgctt ttgcttttgt 7140 aagtgcgctg tagtgcgcct gtctttatgc tttcttatcc tttaagcatc ttttgctttt 7200 tgcgtggcat cctttagttc acaatttaaa gaatgacgat ggggcccaag atgtgcaccc 7260 ggttctctaa attgcctata taaggatatg ccatagcctt gtttttgcaa gtcaggaata 7320 cctgagcata acttggctaa gcaaaagaat tgtaagtttt ctttctaagc ttttttgttt 7380 gtaagctttt cagttcttaa taaatctctc gttaatcgtt gtgaacacat cttgtctttt 7440 gagtatttgt ttttgtattt gctatttgct atttgctttt cctcgaa 7487 //