ID EU489744; SV 1; circular; genomic DNA; STD; VRL; 7473 BP. XX AC EU489744; XX DT 20-APR-2008 (Rel. 95, Created) DT 30-JUN-2009 (Rel. 101, Last updated, Version 2) XX DE Citrus yellow mosaic virus isolate AL, complete genome. XX KW . XX OS Citrus yellow mosaic virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7473 RX DOI; 10.1007/s11262-009-0367-9. RX PUBMED; 19444599. RA Borah B.K., Johnson A.M., Sai Gopal D.V., Dasgupta I.; RT "Sequencing and computational analysis of complete genome sequences of RT Citrus yellow mosaic badna virus from acid lime and pummelo"; RL Virus Genes 39(1):137-140(2009). XX RN [2] RP 1-7473 RA Borah B.K., Johnson A.M.A., Saigopal D.V.R., Dasgupta I.; RT ; RL Submitted (04-FEB-2008) to the INSDC. RL Plant Molecular Biology, Delhi University South Campus, Benito Juarez Road, RL New Delhi, Delhi 110021, India XX DR MD5; 9ae27a36d9d9e62a2e436e3b7dfeb496. XX FH Key Location/Qualifiers FH FT source 1..7473 FT /organism="Citrus yellow mosaic virus" FT /host="acid lime" FT /isolate="AL" FT /mol_type="genomic DNA" FT /country="India" FT /db_xref="taxon:174178" FT CDS 231..662 FT /codon_start=1 FT /product="unknown" FT /note="ORF I" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:B2L8M4" FT /protein_id="ACB87148.1" FT /translation="MSRIWEEAIQRWYETSHTANLEYLDLASKPKVSNSEISHNLAVVY FT DRLSLFSRVTIKNFKSIQETLEKQDLRIQKLESSLKTLTSEFIAHKPLSKAEVKTLVTE FT IAKQPKLVEAQALQLTENLNQKLDRVEALISKVERWVHS" FT CDS 659..1072 FT /codon_start=1 FT /product="unknown" FT /note="ORF II" FT /db_xref="UniProtKB/TrEMBL:B2L8M5" FT /protein_id="ACB87149.1" FT /translation="MTYQATEKTPTYKRALAATEPINSPSLGFVNPEEYSGGITGTKAL FT IKQNNLLIQLVVELSVNINSLSEQVDQLAKQLGKQPQQGSSTTALPDDLVDKLRNLSLG FT TEKKKEKRGTFYAYKDPYLIYKEEVEKLKKQQQ" FT CDS 1069..6999 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF III" FT /db_xref="GOA:B2L8M6" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:B2L8M6" FT /protein_id="ACB87150.1" FT /translation="MSSSRARTVVEQLPPATTSRVEERDNTPLYDDQIRDYRQWQRRRH FT NMGRRWNQLIGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRSDDRHHQVYIH FT RSEEAILCVDGDQVDRLLIQPESAEQLNRSGMSFINMGIVQVRIQILHRQHEGTTALVV FT FRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKAYGNWQNG FT EANLLVTRGIVGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSAADVQGQQWFLR FT PSNIPAVPMAPTNVDTRNMIDGSISLRFNSYQPAPDPAPVTYNQHDEEIPPDEDEEQIR FT NHTIALWRENDEVWDTLGEPSGKFDFYVRYTRPAHALQDPAHIIATGWDDLDDNPSPSS FT PSNNIRTYQTPSPPSSSDENDDMSYLQYLAQQSPVPPPTQDFTNPFSEGGGESTYPYPS FT FQPPFDLQSDDSYGTLATWSEYDAMSQTNSSPALSPSAKTVFDFDRYSHTTNEDDVVQS FT AWISENLFRENTGHGEVHNLVPPGPDTPRGDEVKGTQESMAHTVAVTTEGPKQEAEFDY FT PAFAKLQDHEKCSRPKPKTEKVLSSAISSYTPPSDTAMTPVAYPPAQNIASPSYNPSPQ FT VPMFEGYSPKRPHFKRDNHTFISLPSAQQNTGALFIMPQQIGLSHEVFTSWEAITKAYV FT AQQGITDPRDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILSQMR FT RVFSLEDPATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSE FT KLWLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFC FT SSIPIPGYYGGRSSEKRYGIRRTTTYKGKPHNTHARIEKTKHLRNKKCKCYLCGEEGHF FT ARECPNDRRNVKRVAMFEGLDLPDDCEIVSIDEGDPDSDAIFSISEGEETGAFEEQCFV FT FQEECNGTYWLGKRGGYQDLVQISKEIYYCQHEWEENQPIDDPAHVRCYPCKRETTQRA FT RLHCKLCHITSCLMCGPTYFNRKITVQPIPQAPFNQKGLLQQQQEYIAWCNNEIARLKE FT EVAFYKQLAQERELQLQLEQSRKELAGADSRRRKDKGVVIDEGSCYFNPEETTRIVAHG FT DTQVTKTRPVKNMLYNMDVRIEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEENSF FT VVNFSGINSKQQVKQKIKPGKMFISEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSMYG FT GVRLEGNTITFYKQITSINTRLAAPLLQQEEEEKEEELNLEEHRLIQEMVAYSTERPFV FT HFQQKFAGLIQELKAQGYIGEEPMKYWAKNQVVCHLDIKNPDMVIEDRPLKHVTPQMEG FT SFRKHVEALLKIGAIRPSKSRHRTTAIIVNSGTSIDPLTGKEVKGKERMVFNYKRLNDL FT TNKDQYSLPGIQTILQRLKGSTIFSKFDLKSGFHQVAMHPDSIEWTAFWVPSGLYEWLV FT MPFGLKNAPAVFQRKMDHCFKGTEAFIAVYIDDILVFSKTEREHEEHLQIMLSICQKNG FT LILSPTKMKIAQAEIEFLGAIIHKGLIKLQPHIVQKLLTFTNKQLEEVKGLRSWLGLLI FT NYARSYIPHMGRLLSPLYAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFI FT IIETDGCMDGWGGVCKWKLAQYDSRSSEKVCAYASGKFNPPKSTIDAEIRAVMNSLNNF FT KIYYLDKSSLCLRTDCQAIISFFNKSNVNKPSRVRWIAFTDFLTGLGIPVNIEHIDGKN FT NHLADALSRLVTGFVFAEPQCQDKFQDDLGKLEAALLEKKEAPQAMHEEYVSLLTRSAD FT RITLSLYSMRDSSPSRIYSCRSGKEPMKALICEQKSCLSKGDLGSMKTVHSRSASNQQG FT NWWPSTSINSVTSEAKRQETTHMPINCPHAIGTTNSCVKWSSC" FT CDS 1973..2518 FT /codon_start=1 FT /transl_except=(pos:1973..1975,aa:Met) FT /product="unknown" FT /note="ORF IV" FT /db_xref="GOA:B2L8M7" FT /db_xref="UniProtKB/TrEMBL:B2L8M7" FT /protein_id="ACB87151.1" FT /translation="MDPFLSDSIVINQLRIQHLLPIINMMRKYPLMKMKNRSVIIPLRY FT GVKMMRYGIHWVNLRVNLTFMFAIPDLHMLYKTLPILSLLVGMILMIILLHPVHPTIFV FT LTKPLPLLPLLTRMMICPTFNTLLSNHLSLLLHRILPILFRKVVGSLPTLTPHFSHHLT FT YNQMIHMVLWQLGVNMMP" FT CDS 3953..4240 FT /codon_start=1 FT /product="unknown" FT /note="ORF V" FT /db_xref="UniProtKB/TrEMBL:B2L8M8" FT /protein_id="ACB87152.1" FT /translation="MKEIQTVMLSSASQREKKLEHLKNSVLCSRKNVMGHTGLVREVDT FT RISCKFPKKSTIVSTNGRRINPLMIQRMFDVTLAKGKLLKELAYIVSYAT" FT CDS 6573..7037 FT /codon_start=1 FT /product="unknown" FT /note="ORF VI" FT /db_xref="UniProtKB/TrEMBL:B2L8M9" FT /protein_id="ACB87153.1" FT /translation="MSRQVPGRFREVGSSSSGEERGSASNARRICLPVDQISGPHYPLA FT LLYEGLVSQQNLLMQVRQRTNEGLNLRTEVMPIQRRLGEYEDCALQECIQSARQLVALH FT QHKLSYIRGKATRDNAYADKLPTCNRDHEQLCEVVELLEGISERISDTAV" XX SQ Sequence 7473 BP; 2323 A; 1620 C; 1653 G; 1877 T; 0 other; tggtaacaga gcttggttgt gttcttacaa cgatgggagc ttaaaacctt ccattaggtc 60 tgaggaaaga gttaactgta tggtgtgttt agttcctatt tgtattgtta ttcctttgtt 120 catgatatag aaaacgatca tcgcgaaaag ggtgaaggca ctatatctgg cagcaagagg 180 agagtaagtc cagtgaaacc cttcgcatga cgctaaaggt gatctaatct atgtctagaa 240 tctgggaaga agcaatacaa agatggtatg agacatccca tacagccaat ctcgagtact 300 tagatctagc ttcaaaacca aaagtttcca attccgaaat ctcacacaac cttgcagtag 360 tttacgatcg tttgagtctt tttagccgtg ttaccattaa gaatttcaaa agtatccaag 420 aaaccctaga aaagcaagac cttagaatcc aaaaacttga gtccagtctg aaaaccctaa 480 ctagtgagtt tatagcccat aaacctttat ccaaagctga ggtgaaaacc ttagttacag 540 aaattgccaa acagccaaag cttgttgaag cacaagccct ccagcttaca gaaaacctga 600 accagaagct cgatcgggta gaagccttga tatctaaggt ggaacgttgg gttcattcat 660 gacctatcag gctactgaga aaaccccaac atacaagcgt gctcttgcgg caaccgagcc 720 tattaacagt ccatcacttg gatttgttaa cccagaggaa tattctggtg gtataactgg 780 tactaaagct ctcattaagc aaaacaattt gcttattcag ctcgtagtag agctttctgt 840 caacatcaac agtttgtcag aacaagttga tcagctagca aaacaacttg ggaaacaacc 900 tcagcaaggc tcatcaacaa cagccttacc tgacgatctt gttgacaaac tcagaaacct 960 ttctttaggt actgagaaga agaaggaaaa gcgtggtacc ttctacgctt acaaagaccc 1020 ctacttgatc tacaaggaag aagtagaaaa gctaaagaag cagcagcaat gagcagtagc 1080 cgagcaagaa ccgtggtaga acaacttcca cctgcgacta cgtcccgagt ggaggagcga 1140 gataacaccc ccctctatga tgatcaaata cgggattaca ggcagtggca gcggcggcgt 1200 cacaacatgg gaaggagatg gaatcaattg ataggtcgac cctacaatca gaccttggag 1260 caggtagtag atcctgaggt agctttacag ttatctatgc aggaacgtgc aaggctagta 1320 ccagcagagg tactttacag atcaaggagt gatgatcggc accatcaggt ctatatacac 1380 agatcagagg aggctatcct ttgtgttgac ggagatcaag ttgaccggtt actgatacaa 1440 ccggaaagtg ctgaacagct aaacaggagt ggtatgtcct ttatcaatat gggcatagtt 1500 caggttcgga tccagatctt gcacagacag catgagggaa caacagccct tgtggtgttc 1560 agagataatc ggtggcaagg cgatcaatct atattcgcca ccatggaact tgatttgacc 1620 aaaggaatgc aaatggtata cataatccca gatacaatga tgacagtcag agacttctgc 1680 cggaatgttc aaatttccat attaacaaaa gcatatggga attggcagaa cggtgaggca 1740 aatttgcttg tcacaagggg aatcgttgga cggttatcta atacccctaa tgtggccttt 1800 gcctatcaga tccaaaatgt tacagattat ctagtcagtc atgggattca ggcgttgcca 1860 ggacgacgct attcagctgc agatgtacag ggccagcaat ggtttctacg accatccaat 1920 attccagcag ttccaatggc ccctactaac gtggatacac gtaacatgat agacggatcc 1980 atttctctca gattcaatag ttatcaacca gctccggatc cagcacctgt tacctataat 2040 caacatgatg aggaaatacc ccctgatgaa gatgaagaac agatccgtaa tcataccatt 2100 gcgctatggc gtgaaaatga tgaggtatgg gatacactgg gtgaaccttc gggtaaattt 2160 gacttttatg ttcgctatac ccgacctgca catgctttac aagaccctgc ccatattatc 2220 gctactggtt gggatgatct tgatgataat ccttctccat ccagtccatc caacaatatt 2280 cgtacttacc aaaccccttc ccctccttcc tcttctgacg agaatgatga tatgtcctac 2340 cttcaatacc ttgctcagca atcacctgtc cctcctccta cacaggattt taccaatcct 2400 ttttcggaag gtggtgggga gtctacctac ccttacccct catttcagcc accatttgac 2460 ctacaatcag atgattcata tggtactttg gcaacttgga gtgaatatga tgccatgagc 2520 caaactaata gctcacctgc acttagtcct agtgcaaaaa ctgtttttga ttttgacagg 2580 tactcccaca caacaaatga agatgacgtg gttcaatcag cctggatttc tgaaaatcta 2640 tttcgtgaaa acaccggaca cggtgaagtt cacaatcttg ttccgcctgg accggacacc 2700 cctcggggtg atgaggtcaa aggaacccaa gaatccatgg cccatactgt tgcagtaacc 2760 acagaaggac caaagcagga agctgagttt gactatccgg cctttgccaa attacaagac 2820 catgaaaagt gcagcaggcc taagcccaaa actgagaaag tcctgtcttc agcaatttct 2880 tcatatactc caccaagtga tactgcaatg acacctgttg cgtacccccc agcgcagaat 2940 atagctagcc caagctacaa cccaagccca caagtaccta tgttcgaagg ttacagccca 3000 aaaagacccc acttcaaaag ggataatcat acttttataa gccttccctc agcccaacaa 3060 aatactgggg ctttatttat catgcctcaa cagataggcc tgtctcatga ggtcttcacc 3120 tcttgggaag caattacaaa agcctatgtt gctcaacagg gtatcacaga ccctagagat 3180 aaggctgact tcattgagaa catgttgggt ccaacagaga aaataatttg gactcaatgg 3240 cgtatgggct acgctgatga atatgagaac cttgtaacaa cagctgacgg acgtgagggt 3300 actcaaaaca tactctccca gatgcgaagg gtcttttcat tggaagatcc agcaactggt 3360 tcaactgcag tccaagatga agcttacaga gacttggaga gactcacttg tgattcagtc 3420 aagcatatag tccaatactt gaatgacttt atgcgaattg cagcaaaaac tgggcgcatg 3480 ttcataggcc cagaattgag tgaaaaacta tggctcaaaa tgccaggtga tctaggccaa 3540 aggatgaaga aggcctatga ggaaaaacat ccaggaaaca tcgttggtgt gtgccctcgg 3600 atcttgttcg cttacaagta ccttgaaggc gagtgtaaag atgcagcgtt cagacgctcc 3660 ctgaagaact tatcattttg cagctcaatc cctatcccag gctattatgg tggtagaagt 3720 agtgagaagc gttatggtat aagacgcaca accacttaca aagggaaacc tcataacaca 3780 catgcaagaa ttgaaaagac aaaacatttg cgcaataaaa agtgcaagtg ttatctttgt 3840 ggagaagaag gtcacttcgc acgggaatgt ccaaatgacc ggcgaaatgt gaagcgagtt 3900 gcaatgtttg aaggactaga tctccctgat gactgtgaga tcgtctctat tgatgaagga 3960 gatccagaca gtgatgctat cttcagcatc tcagagggag aagaaactgg agcatttgaa 4020 gaacagtgtt ttgtgttcca ggaagaatgt aatgggacat actggcttgg taagagaggt 4080 ggataccagg atctcgtgca aatttccaaa gaaatctact attgtcagca cgaatgggag 4140 gagaatcaac ccattgatga tccagcgcat gttcgatgtt acccttgcaa aagggaaact 4200 actcaaagag ctcgcttaca ttgtaagcta tgccacataa catcctgtct tatgtgtggc 4260 cccacctatt tcaacagaaa gatcactgtc cagccaatac ctcaagcacc cttcaaccaa 4320 aagggattgt tacaacagca acaggaatac atcgcctggt gcaataatga aattgccaga 4380 ttaaaggaag aagttgcttt ttacaagcag cttgcccagg agagagagtt gcaattacag 4440 ttagaacagt ctagaaagga gttagcagga gcagactctc gcaggcgaaa agacaaaggg 4500 gtagtaattg atgaagggtc atgctacttc aatccagagg aaacaaccag aatagttgct 4560 catggagata cacaggttac caaaactaga cctgtgaaaa atatgttata taacatggat 4620 gtgcgaatag agattccagg catcccagct tttacagtaa aggcgattct tgacacagga 4680 gcaacaacct gctgcattga cagcagaagt gtgccaaaag atgcccttga agagaattcg 4740 tttgtggtga atttctcagg catcaactca aaacagcaag ttaagcagaa gattaagccg 4800 ggaaaaatgt tcatcagtga gcattacttc cgaattccat attgctacag cttcgagatg 4860 caaattggtg atggcatcca actcattctt gggtgcaact ttatacggag catgtatggt 4920 ggtgtacgac tagaaggtaa taccataacc ttctacaagc agatcacaag tatcaacacc 4980 agacttgctg cacctctcct ccagcaggaa gaagaagaga aagaagagga gcttaacctg 5040 gaagaacaca ggttaattca ggaaatggtt gcatactcta ctgagcggcc atttgttcat 5100 ttccaacaaa agtttgcagg gcttattcag gagttgaaag cccagggtta cattggggaa 5160 gagcctatga aatattgggc caaaaatcaa gttgtttgcc atctggacat caaaaatcca 5220 gatatggtaa ttgaagatcg cccactgaag catgtgacac cccaaatgga aggaagcttt 5280 cgcaagcatg tggaagcact gttaaaaatt ggtgcgatcc gacccagtaa aagtcgacac 5340 aggacaacag ccattatagt caactctgga accagtattg atcctctcac aggcaaagaa 5400 gtcaaaggca aagagaggat ggtctttaac tataaaaggt taaatgacct cacaaacaaa 5460 gatcaataca gccttccggg catccaaacg atcctgcaaa ggttaaaggg gagtactata 5520 ttctccaaat ttgaccttaa aagtggcttt caccaggtag caatgcatcc agattcaatt 5580 gaatggacag ctttttgggt gcctagcggt ctctatgaat ggttagtcat gccattcggg 5640 ttaaagaatg ctccagcagt ttttcagaga aaaatggatc actgcttcaa agggacagag 5700 gcctttatcg ctgtttatat tgatgacatc ctggtgttct caaagactga aagggaacat 5760 gaagagcatt tacagattat gctctcgatc tgccaaaaga atgggcttat cttgagccca 5820 acaaagatga aaattgccca agctgaaatt gaattcctcg gggcaatcat tcacaaaggg 5880 cttattaaat tacagcccca tattgtccaa aagttgctaa ctttcaccaa caagcaactc 5940 gaggaagtga aagggctcag atcatggttg ggcctactaa taaactatgc aaggagttac 6000 attcctcaca tgggccgttt actcagccca ttgtatgcca aagtcagccc aactggtgaa 6060 cggagaatga ataggcaaga ttgggccttg atcgacaaaa taagagccca agtccagaac 6120 cttccagccc tggaattacc acctgcggac tgtttcatca tcatcgaaac agatggatgc 6180 atggatggtt ggggaggtgt ctgcaaatgg aagctagcac aatatgactc taggagttca 6240 gaaaaggttt gtgcttatgc aagtgggaag ttcaacccac caaagtcaac aatcgatgcg 6300 gagatacgtg cagtgatgaa cagcctcaac aatttcaaaa tctattacct agacaaatcc 6360 agcttatgtt taaggactga ctgtcaagct attattagct tctttaataa gtccaatgtt 6420 aacaaaccat ctagggttag atggattgct ttcacagatt tccttactgg tctaggaatc 6480 cctgtaaata tagagcacat agatgggaag aataaccatc tggctgatgc tctgtccagg 6540 ttagtaactg gttttgtttt tgcagaacca caatgtcaag acaagttcca ggacgattta 6600 gggaagttgg aagcagctct tctggagaag aaagaggctc cgcaagcaat gcacgaagaa 6660 tatgtctccc tgttgaccag atcagcggac cgcattaccc tctcgctcta ctctatgagg 6720 gactcgtctc ccagcagaat ctactcatgc aggtcaggca aagaaccaat gaaggcctta 6780 atttgcgaac agaagtcatg cctatccaaa ggcgacttgg ggagtatgaa gactgtgcac 6840 tccaggagtg catccaatca gcaaggcaac tggtggccct ccaccagcat aaactcagtt 6900 acatcagagg caaagcgaca agagacaacg catatgccga taaactgccc acatgcaata 6960 gggaccacga acagctgtgt gaagtggtcg agctgttaga gggaatctca gaaaggatca 7020 gtgatacagc tgtctaggat agctggcttc aattatggag catgatggac ccccccgcaa 7080 taatccaaag tgtggagtgc ttttattgta taattttatg cttttgcttt tgtaagtgcg 7140 ctgtagtgcg cctgtcttta tgctttctta tcctttaagc atcttttgct ttttgcgtgg 7200 catcctttag ttcacaattt aaagaatgac gatggggccc aagatgtgca cccggttctc 7260 taaattgcct atataaggat atgccatagc cttgtttttg caagtcagga atacctgagc 7320 ataacttggc taagcaaaag aattgtaagt tttctttcta agctttttgt ttgtaagctt 7380 ttcagttctt aataaatctc tcgttaatcg ttgtgaacac atcttgtctt ttgagtagtt 7440 gtttttgtat ttgctatttg ctatttcctg gaa 7473 //