Dbfetch
ID EU487046; SV 1; circular; genomic DNA; STD; VRL; 2761 BP. XX AC EU487046; XX DT 11-MAR-2008 (Rel. 95, Created) DT 01-MAY-2011 (Rel. 108, Last updated, Version 2) XX DE Tomato leaf curl Mindanao virus isolate P162, complete genome. XX KW . XX OS Tomato leaf curl Mindanao virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2761 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M.U., Green S.K., Kenyon L., RA Jan F.J.; RT "Distribution and genetic diversity of begomoviruses infecting tomato and RT pepper plants in the Philippines"; RL Ann. Appl. Biol. 158(3):275-287(2011). XX RN [2] RP 1-2761 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT "Molecular identification of Solanaceae- and Cucurbitaceae-infecting RT Begomoviruses in the Philippines"; RL Unpublished. XX RN [3] RP 1-2761 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT ; RL Submitted (13-FEB-2008) to the INSDC. RL Virology Unit, AVRDC-the World Vegetable Center, P.O. Box 42, Shanhua, RL Taina, Taiwan 74199, Republic of China XX DR MD5; 9fd8f0ebbb174fc458b3bc10cca117b6. XX FH Key Location/Qualifiers FH FT source 1..2761 FT /organism="Tomato leaf curl Mindanao virus" FT /segment="DNA-A" FT /host="tomato" FT /isolate="P162" FT /mol_type="genomic DNA" FT /country="Philippines:Mindanao" FT /isolation_source="plant with mosaic symptom" FT /db_xref="taxon:507476" FT misc_feature join(2601..2761,1..129) FT /note="intergenic region" FT gene 130..480 FT /gene="V2" FT CDS 130..480 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:B1PRI0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B1PRI0" FT /protein_id="ACA61112.1" FT /translation="MWDPLVNEFPDTVHGFRCMLAVKYLQLVESTYSPDTLGYDLIRDL FT ISVVRAKNYVEASRRYSHFHSRIEGTSPSQFRQPLHEPCCCPHCPRHQQKENMVQQAHV FT QEAQNVQNVQKP" FT gene 290..1063 FT /gene="V1" FT CDS 290..1063 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:B1PRI1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B1PRI1" FT /protein_id="ACA61113.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYTSRAAAPTVLVTNKRRTW FT SNRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGSGLTH FT RVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPYGTAMEFGQVFNMYDNE FT PSTATIKNDLRDRYQVLRKFTSTVTGGQYASKEQALVRKFMKVNNYVVYNHQEAAKYDN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSLQN" FT gene complement(1060..1464) FT /gene="C3" FT CDS complement(1060..1464) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:B1PRI2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B1PRI2" FT /protein_id="ACA61116.1" FT /translation="MDFRTGELLTATQCESGVYTWTIKNPLYFKITKHHERSFNNNHDI FT ITIQIQFNHNLRKALGIHQCFLIFQIWTRLQPQTWRFLRVFKYQCMKYLDNLGVISINN FT VIRAVSHVLWNVLERTIDVQLSSIIKFNLY" FT gene complement(1205..1612) FT /gene="C2" FT CDS complement(1205..1612) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:B1PRI3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B1PRI3" FT /protein_id="ACA61115.1" FT /translation="MQNSSPSQAHCTQVPIKVQHRIAKKRPVRRRRVDLPCGCSYYFGI FT DCANHGFSHRGITHCNSMREWRVYLDNQKSPIFQDHQTPREIIQQQPRHHNDPDTVQPQ FT PEESVGNTPVFSDFPDLDSLTTSDLAFLKSL" FT gene complement(1512..2600) FT /gene="C1" FT CDS complement(1512..2600) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:B1PRI4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B1PRI4" FT /protein_id="ACA61114.1" FT /translation="MAPPRKFQINAKNYFLTYPQCSLTKEEALSQIQNIQTPTNKKYIR FT ICRELHEDGSPHLHVLVQFEGKYRCTNSRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDARSARGGQQSANDAYAKALNAGSKSEALNVIKELAPKDFVLQFH FT NLNNNLDRIFAPPLEVFVCPFLSSSFNQVPEELEDWVSENVRDAAARPWRPKSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVXPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDENKNSALKDWALKNAEFITLTSPL FT YSGTHQSPTQNSQEEACSQTES" FT gene complement(2153..2443) FT /gene="C4" FT CDS complement(2153..2443) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B1PRI5" FT /protein_id="ACA61117.1" FT /translation="MGALISTCSYSSKGNTDAQIHDSSTLYPLPGQHISIRTFRELNQA FT PTSSPISTRTETLSNGVNSRSTHDLHEGDNNQPMMLTPRRLTQEVSRRLLM" XX SQ Sequence 2761 BP; 743 A; 549 C; 595 G; 873 T; 1 other; accggatggc cgcgattttt ttggtggtca ctatcactaa cttttgtctg ccaatagaaa 60 cgctccctca aagcttattt aatatgtggt cccctattta aagattgctc actaagttgt 120 ttcccaaaca tgtgggatcc gttagttaat gagtttcccg ataccgttca tggtttcagg 180 tgtatgttag ccgtaaaata cttgcagtta gtagaatcta cgtattcacc agatacgctt 240 gggtacgatc ttatccgaga tttaatttcc gtcgtccgtg caaaaaacta tgtcgaagcg 300 tcccgccgat atagtcattt ccactcccgc atcgaaggta cgtcgccgtc tcaatttcga 360 cagcccttac acgagccgtg ctgctgcccc cactgtcctc gtcaccaaca aaaggagaac 420 atggtccaac aggcccatgt acaggaagcc cagaatgtac agaatgtaca gaagccctga 480 tgtgcccaaa ggttgtgaag gcccatgtaa ggtccaatcg tatgaacaga ggcacgacat 540 atcccatgtt ggtaaagtat tatgtgttag tgatgtcact cgtggcagtg ggcttaccca 600 tcgagttggt aagagattct gtgtgaagtc cgtctatgta ttgggtaaaa tatggatgga 660 tgaaaatatc aaaaccaaga accatacgaa cactgtgatg ttttatcttg ttcgtgatag 720 aaggccctat ggtactgcta tggaatttgg tcaggtgttt aacatgtatg ataatgagcc 780 cagtactgct actatcaaga atgatcttcg agatcgttat caggttttaa gaaaattcac 840 ctcaacggtc acaggcggtc aatatgcttc taaggaacag gcgttggtta ggaaatttat 900 gaaggttaat aattatgtag tttataatca tcaagaggct gctaagtatg acaatcatac 960 tgagaatgcc ttgttattgt atatggcttg tactcatgcc agtaatccag tgtatgctac 1020 tttgaagatc agaatctatt tctatgattc tcttcagaat taataaagat tgaattttat 1080 tatacttgaa agttgtacat cgattgttct ttccaataca ttccataata catgagaaac 1140 tgccctaatt acattgttaa tgctgattac acccaaatta tctaaatact tcatacattg 1200 atatttaaag actcttaaga aacgccaagt ctgaggttgt aagcgagtcc aaatctggaa 1260 aatcagaaaa cactggtgta ttcccaacgc tttcctcagg ttgtggttga actgtatctg 1320 gatcgttatg atgtcgtggt tgttgttgaa tgatctctcg tggtgtttgg tgatcttgaa 1380 atatagggga tttttgattg tccaggtata cacgccactc tcgcattgag ttgcagtgag 1440 taattcccct gtgcgaaaat ccatgatttg cacaatctat gccgaagtag tatgagcaac 1500 cgcaaggaag atcaactctc cgtctgcgaa caggcctctt cttggctatt ctgtgttgga 1560 ctttgatggg tacctgagta caatgggctt gtgagggtga tgaattctgc attctttagt 1620 gcccaatctt ttaatgctga atttttattt tcgtccaagt actctttata tgatgatgtt 1680 ggtcccggat tgcagaggaa gatagtggga attccacctt taatttgaat gggcttcccg 1740 tacttggtgt tgctttgcca gtccctttgg gcccccatga attctttaaa atgctttaga 1800 tagtgggggt sgacgtcatc aatgacgttg taccaagcat cattactgta gacctttgga 1860 cttaagtcca gatgtccaca taagtaattg tgtggaccca gtgacctagc ccacatcgtc 1920 ttccctgtcc tactatcgcc ctctattaca atacttttag gtctccaagg ccgcgcagcg 1980 gcatccctta cattctcaga gacccaatct tcaagttctt ctggaacttg attaaaagaa 2040 gaagaaagaa aaggacaaac aaaaacctct aaaggaggtg cgaaaatcct atctaaatta 2100 ttatttaaat tatgaaattg taaaacaaaa tctttaggag ctaattcctt aattacatta 2160 agagcctccg acttacttcc tgcgttaagc gccttggcgt aagcatcatt ggctgattgt 2220 tgtccccctc gtgcagatcg tgcgtcgatc tggaattcac cccattcgag agtgtctccg 2280 tccttgtcga tataggactt gacgtcggag cttgatttag ctccctgaat gttcggatgg 2340 aaatgtgctg acctggaagg ggatacaagg tcgaagaatc gtgaatttgt gcatctgtat 2400 ttcccttcga actgtacgag cacgtggaga tgagggctcc catcttcgtg aagttctctg 2460 cagattctga tatatttttt atttgttggg gtttgtatat tttgtatttg ggaaagtgct 2520 tcctctttgg ttagagagca ctgtggatat gtgaggaaat aatttttggc atttatttgg 2580 aattttctcg gtggtgccat ttgacttagt caatgggtac ccaatgagag gatttcctaa 2640 tgctctgggt atcggtacat tggtacccat ctatactcgg ttacctaatg gcattaatgt 2700 aatttctaga gaaattcaaa attttaattt taaatccaaa agcggccatc cgtataatat 2760 t 2761 //